Typing tool

Complete norovirus genomes

LC342059  GII.12
 GII.PNA7

Length: 7,557 | 3 CDS

ORF1: 11..5104
ORF2: 5085..6692
ORF3: 6692..7471
LOCUS       LC342059                7557 bp    RNA     linear   VRL 02-APR-2019
DEFINITION  Norovirus GII Hu/JP/1999/GII.PNAe-GII.12/No35-Saitama-99-1 genomic
            RNA, complete genome.
ACCESSION   LC342059
VERSION     LC342059.1
KEYWORDS    .
SOURCE      Norovirus GII
  ORGANISM  Norovirus GII
            Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
            Picornavirales; Caliciviridae; Norovirus.
REFERENCE   1
  AUTHORS   Sano,D., Utagawa,E. and Katayama,K.
  TITLE     Identification of novel norovirus polymerase genotypes from human
            fecal samples collected before year 2000
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 7557)
  AUTHORS   Utagawa,E., Katayama,K. and Doan,H.Y.
  TITLE     Direct Submission
  JOURNAL   Submitted (08-DEC-2017) Contact:Etsuko Utagawa Kitasato University,
            Kitasato Institute for Life Sciences, Laboratory of Viral Infection
            I; 5-9-1 Shirokane, Minato-ku, Tokyo 108-8641, Japan
FEATURES             Location/Qualifiers
     source          1..7557
                     /organism="Norovirus GII"
                     /mol_type="genomic RNA"
                     /strain="Hu/JP/1999/GII.PNAe-GII.12/No35-Saitama-99-1"
                     /host="Homo sapiens"
                     /db_xref="taxon:122929"
                     /country="Japan:Saitama"
                     /collection_date="1999"
                     /note="genotype: GII"
     CDS             11..5104
                     /codon_start=1
                     /product="polyprotein"
                     /protein_id="BBB94175.1"
                     /translation="MASNDASAAAAATSNNDIEKSSSDGVLSSMAVTFKRALGARPKQ
                     PAPRDKPPKPPRPPTPELVKKIPPPPPNGEDEPVISYSAKDGVSGLPELTTVRQPDVH
                     STAFSVPPLDQRENRDAKEPLTGTILEMWDGEIYHYGLYVERGLVLGVHKPPAAISLA
                     KVEMTPLSLYWRPVYTPQYLIAPDTLKKLHGELFPYTAFDNNCYAFCCWVLDLNDCWL
                     SRRMIQRTTGFFRPYQEWNRKPLPTMDDSKLKKVANIFLCALSSLFTRPIKDIIGKLR
                     PLNILNILASCDWTFAGIVESLILLAELFGVFWTPPDVSAMIAPLLGDYELQGPQDLA
                     VELVPIVMGGIGLVLGFTKEKIGKMLSSAASTLRACKELGAYGLEILKLVMKWFFPKK
                     EEANELAMVRAIEDAVLDLEAIENNHMTALLKDKDSLATYMRTLDLEEEKARKLSTKS
                     ASPDIVGTINALLARIAAARSLVHRAKEELSSRPRPVVIMISGKPGIGKTHLARELAK
                     KIAATLSGDQRVGLIPRNGVDHWDAYKGERVVLWDDYGMSNPVHDALRLQELADTCPL
                     TLNCDRIENKGKVFDSDTIIITTNLANPAPLDYVNFEACSRRIDFLVYAEAPEVEKAK
                     RDFPGQPDMWRSAFSPDFSHIKMQLAPQGGFDKNGNTPHGKGVMKSLTMGSLIARASG
                     LLHERLDEYELQGPTLTTFNFDRNKIHAFRQLAAENKYGLVDTMRVGGQLKGVKTMPE
                     LKQALKNISIRRCQIVYGGCTYILESDGKGNVKVEKVQSTTVQTNNEMAGALHHLRCA
                     RIRYYVKCVQESIYSILQIAGAAFVTTRIVKRMNIQSLWSKPPVGDADETATEEGCPK
                     PKDDEEFIVSSDDIKAEGKKGKNKSGRGKKHTAFSSKGLSDEEYDEYKRIKEERNGKY
                     SIEEYLQDRDKYYEEVAIARATEEDFCEEEEAKIRQRIFRPTRKQRKEERASLGLVTG
                     SEIRKRNPDDFKPKGKLWADDDRSVDYNEKLSFEAPPSIWSRIVNFGSGWGFWVSPSL
                     FITSTHVIPPGAQEFFGVSVKQIQIHKSGEFCRLRFPKPIRTDVTGMILEEGAPEGTV
                     ATLLIKRPTGELMPLAARMGTQATMKIQGRMVGGQMGMLLTGSNAKSMDLGTTPGDCG
                     CPYIYKRGNDYIVIGVHTAAARGGNTVICATQGSEGEAILEGGDNKGTYCGAPILGPG
                     NAPKLSTKTKFWRSSTAPLPPGTYEPAYLGGKDPRVKGGPSLQQVMRDQLKPFTEPRG
                     KPPKPNVLEAAKKTIINVLEQTIDPPQRWSYAQACASLDKTTSSGHPHHIRKNDCWNG
                     ETFTGKLADQASRANLMYEEGKSMTPVYTGALKDELVKTDKIYGSIKKRLLWGSDLAT
                     MIRCARAFGGLMDELKAHCITLPVRVGMNMNEDGPIIFEKHSRYRYHYDADYSRWDST
                     QQRAVLAAALEIMVKFSPEPHLAQIVAEDLLSPSVMDVGDFKISINEGLPSGVPCTSQ
                     WNSIAHWLLTLCALSEVTDLSPDIIQANSLFSFYGDDEIVSTDIKLDPEKLTAKLREY
                     GLKPTRPDKTEGPLIISEDLNGLTFLRRTVTRDPAGWFGKLDQSSILRQMYWTRGPNH
                     EDPFETMIPHSQRPIQLMSLLGEAALHGPSFYSKISKLVITELKEGGMDFYVPRQEPM
                     FRWMRFSDLSTWEGDRNLAPSFVNEDGVE"
     gene            5085..6692
                     /gene="VP1"
     CDS             5085..6692
                     /gene="VP1"
                     /codon_start=1
                     /product="viral protein 1"
                     /protein_id="BBB94176.1"
                     /translation="MKMASSDAAPSNDGAAGLVPEANNETMALEPVAGASIAAPLTGQ
                     NNVIDPWIRLNFVQAPNGEFTVSPRNSPGEILLNLELGPELNPYLAHLSRMYNGYAGG
                     VEVQVLLAGNAFTAGKLVFAAVPPHFPLENISPGQITMFPHVIIDVRTLEPVLLPLPD
                     VRNSFFHYNQQNESRMRLVAMLYTPLRSNGSGDDVFTVSCRVLTRPSPDFDFNYLVPP
                     TIESKTKPFTLPILTIGELTNSRFPAPIDELYTSPNESLVVQPQNGRCALDGELQGTT
                     QLLPTAICSFRGRINQKVSGENHVWNMQVTNTNGTPFDPTEDVPAPLGTPDFSGKLFG
                     VLSQRDHDNACRSHDAVIATNSAKFTPKLGAIQIGTWEEDDVHINQPTKFTPVGLFEH
                     EDFSQWTLPNYSGALTLNMGLAPPVAPTFPGEQILFFRSHIPLKGGVADPVIDCLLPQ
                     EWIQHLYQESAPSQSDVALIRFTNPDTGRVLFEAKLHRSGYITVANTGSRPIVVPANG
                     YFRFDSWVNQFYSLAPMGTGNGRRRVQ"
     gene            6692..7471
                     /gene="VP2"
     CDS             6692..7471
                     /gene="VP2"
                     /codon_start=1
                     /product="viral protein 2"
                     /protein_id="BBB94177.1"
                     /translation="MAGAFIAGLAGDIVTNSVGSLVNAGANAINQKVDFENNKQLQQA
                     SFNHDKEMLQAQIQATKQLQAEMIAIRQGVLTAGGFSPTDAARGAVNAPMTQVLDWNG
                     TRHWAPGATRTTAFSGGFTSASHARTVDLTKRTSATPAPMPVSRPSSTVSTVSTRSTL
                     ISGSSNPSSSARSSSSVSSQPTSSSSRTSEWVRSQNRVLEPYMRGALHTAYVTPPSSR
                     ASSNGTVSTVPKEVLDSWTSAFNTRRQPLFAHLRRRGESQA"
ORIGIN      
        1 gtgactgaag atggcgtcta acgacgcttc cgctgccgct gctgctacca gcaacaacga
       61 catcgaaaaa tcttcaagtg acggagtact atctagtatg gctgtcactt ttaaacgagc
      121 cctcggggcc cggcctaaac agccggcccc gagggacaaa ccaccaaaac ccccacgacc
      181 acctacccca gagctggtca aaaagatccc accccctccg cctaacggag aggatgaacc
      241 agttatttcg tacagcgcca aggatggtgt gtctggcttg cctgaactca caacagttag
      301 gcaaccggat gtgcactcta cggcgttcag tgtcccccca ctcgaccaga gggagaatag
      361 ggacgccaaa gaaccactaa ctggcaccat cctggagatg tgggatgggg agatttatca
      421 ttatggcctg tacgtggaac gagggctagt gcttggtgta cacaaacccc cagcggcgat
      481 tagcctcgcc aaggttgaga tgacaccctt gtctctgtac tggagaccag tgtacacccc
      541 gcaatacctc atagcccctg acacgctcaa aaagctgcat ggtgagttat tcccctacac
      601 agcctttgac aacaactgct atgctttctg ttgttgggtc ctagacctaa acgactgctg
      661 gctgagcagg agaatgattc agaggacgac cggcttcttc cgaccatacc aagagtggaa
      721 tagaaagcct ctccctacta tggatgactc caagctgaaa aaggtggcca acatattcct
      781 gtgtgcttta tcatcattgt tcaccagacc cataaaggac ataataggta agttgaggcc
      841 cctcaacatc ctcaacatac tagcatcatg tgattggact tttgcaggca tagtggaatc
      901 attgatcctc ctggctgaac tctttggagt gttctggaca cccccagatg tgtctgcgat
      961 gatcgccccc ttactaggtg actacgaact acaggggccc caagacctcg ctgtggaact
     1021 cgtgcccatt gttatggggg ggataggttt ggtgctggga ttcaccaagg agaaaatcgg
     1081 taagatgcta tcatctgctg cctccacgct gagggcctgc aaagaacttg gagcctacgg
     1141 actggagata ctaaaactgg tcatgaaatg gttcttccca aagaaggagg aggcaaacga
     1201 actggcaatg gtaagagcca ttgaggacgc tgttcttgac cttgaggcaa ttgagaacaa
     1261 ccacatgaca gccttgctca aggacaagga cagcctagca acttacatga ggaccctcga
     1321 cttagaggaa gagaaggcca gaaagctttc tactaagtct gcttcacctg acattgtggg
     1381 cacaattaac gcccttttgg caagaattgc agctgctcgt tccctcgtgc atagagccaa
     1441 agaagaacta tccagcaggc caaggccagt tgttattatg atctcaggca aaccaggtat
     1501 tgggaagacc catctggcca gggagttggc aaagaagatc gccgctaccc tatcaggaga
     1561 ccagagggtg ggtcttatcc cacgaaatgg agtcgaccac tgggacgctt ataaaggtga
     1621 gagagtcgtc ctttgggatg actacggaat gagcaaccct gtccatgatg ctcttagact
     1681 ccaagagctt gctgacacct gccctctaac actaaattgt gacaggatcg aaaacaaagg
     1741 caaggttttt gatagtgata ctataatcat caccaccaat ttggccaacc cggctccact
     1801 ggactatgtc aactttgaag cgtgctcaag gcgcatcgac ttcctcgtgt atgccgaggc
     1861 ccctgaagtt gaaaaggcaa aacgcgactt tccagggcag ccggacatgt ggagaagtgc
     1921 cttcagtcct gacttttcac acatcaaaat gcaacttgct ccccaaggtg gcttcgacaa
     1981 gaacggcaac accccgcatg gcaaaggagt catgaaatct ctaaccatgg gttctctcat
     2041 cgcccgtgcc tcagggctcc tccatgaaag actggatgag tacgagttgc agggacccac
     2101 tctcacaacc ttcaacttcg accgcaacaa aatacatgcc ttcagacagc tcgctgccga
     2161 aaacaagtat ggattggtgg acacaatgcg ggttgggggc caactcaagg gagttaagac
     2221 catgccagaa cttaagcaag ctctcaaaaa catttcaatc agaaggtgcc agatagtcta
     2281 tgggggttgc acctatatac tggaatctga tggcaaaggc aatgtgaagg tcgaaaaggt
     2341 gcaaagcact acggtgcaga ccaacaatga gatggccggc gcactacacc acctaaggtg
     2401 tgccaggatc agatactacg tcaagtgtgt acaggaatcc atctattcca tcctccaaat
     2461 cgctggggct gcatttgtga caacgcgcat tgtcaagcgc atgaacatac agagtctctg
     2521 gtccaaacca ccggtgggag acgcagacga gacggccact gaagaaggct gcccaaagcc
     2581 caaagatgac gaagagttca tcgtctcgtc cgatgatatt aaagctgagg gcaagaaggg
     2641 gaagaacaag tctggccgag gcaagaaaca cacggccttc tcaagcaagg gcctcagcga
     2701 tgaagagtat gatgagtaca agagaattaa ggaggagaga aacggcaagt actctataga
     2761 agaatacctt caggacagag ataagtacta tgaggaggtg gccatagcca gagcaactga
     2821 ggaggacttc tgtgaggaag aggaggccaa aatccggcaa agaatattta gaccaactag
     2881 aaaacaacgc aaggaggaac gcgcctctct cggtctcgtt acaggctcag agatcagaaa
     2941 gcggaaccca gatgacttca aacccaaagg aaaattgtgg gccgacgatg acaggagcgt
     3001 cgactacaat gagaaactca gttttgaagc cccaccaagc atttggtcta gaatagtcaa
     3061 ctttggttct ggctggggat tttgggtctc ccccagctta ttcatcacat caacccatgt
     3121 catacccccg ggcgcccagg agttctttgg tgtgtccgtc aaacaaattc agatccataa
     3181 atcgggagag ttctgccgtc tgagattccc gaaaccaatt aggactgatg tgactggtat
     3241 gatattagaa gaaggagccc cagaaggaac tgtggccaca ctgctcatca agaggccgac
     3301 tggtgaactc atgcccctag cagccaggat gggcacccag gcaacaatga agatccaggg
     3361 tcgcatggtt gggggccaaa tgggcatgct actaacaggg tccaacgcta agagcatgga
     3421 cttgggaaca acaccaggtg actgtggctg tccttacatc tacaaaagag gaaatgacta
     3481 tattgtcatc ggagtccaca cagcagccgc ccgcggtgga aacacagtca tatgtgcaac
     3541 tcaggggagc gaaggtgagg ccatacttga aggaggcgac aacaaaggga cctactgtgg
     3601 tgcaccgatc ctaggccctg gcaacgcccc caagctcagc acaaaaacaa aattttggag
     3661 atcttccact gcaccactcc caccgggcac ttatgagcca gcttacctcg gtggcaaaga
     3721 ccccagggtt aaaggtgggc cttccctaca acaagttatg agagaccagc tgaagccgtt
     3781 caccgagccg aggggcaaac cacccaagcc aaatgtatta gaagcagcaa agaagaccat
     3841 cataaatgtg ttggagcaga caatagaccc cccccaaagg tggtcgtacg cacaagcgtg
     3901 cgcatccctc gacaaaacca catccagtgg ccaccctcac cacattcgga aaaatgactg
     3961 ttggaatgga gaaaccttca caggcaaatt ggcagatcaa gcttcaagag ccaacttgat
     4021 gtacgaggag ggaaaaagca tgaccccagt gtacaccgga gcgctcaagg atgaattagt
     4081 gaaaacagat aaaatatatg gctcaatcaa gaagaggctc ctatggggtt cagacctggc
     4141 aacaatgatc cggtgcgcac gggcgtttgg ggggctgatg gacgaactta aggcccactg
     4201 catcacattg cctgttaggg taggcatgaa catgaatgag gatggcccta taatatttga
     4261 gaaacattct aggtacagat accattatga tgcagactac tcccgctggg actcaacaca
     4321 acagagggcg gtgttagctg cagccctaga aattatggtc aaattctcac cagaaccaca
     4381 tttggctcag atagttgcag aagacctttt gtcccccagt gtgatggatg tcggtgactt
     4441 caagatatcc atcaatgaag gactgccttc gggagtgccg tgcacatcgc agtggaattc
     4501 cattgcccac tggctcctca ccctctgtgc actttccgag gtgacagacc tgtcacctga
     4561 cattatccaa gccaattcct tgttctcctt ctacggtgat gatgaaattg tgagcactga
     4621 cattaaattg gacccagaaa agctgacagc aaaactgagg gagtacggac tcaaacctac
     4681 ccgacctgac aaaactgaag gacctttaat catttctgaa gacttaaatg gcctgacctt
     4741 cttacggagg actgtgactc gagacccagc tggttggttt gggaaattag accagagctc
     4801 aatacttaga caaatgtact ggaccagggg ccccaatcat gaagaccctt ttgaaacaat
     4861 gataccacat tcccaaagac ccatccagct aatgtcgctc ttgggcgaag cagccctaca
     4921 tggcccatca ttctacagta aaatcagcaa attggtcatc acagagttaa aggaaggtgg
     4981 catggatttt tacgtgccca ggcaagagcc catgttcagg tggatgaggt tctcagactt
     5041 gagcacgtgg gagggcgatc gcaatctggc tcccagtttt gtgaatgaag atggcgtcga
     5101 gtgacgccgc tccatctaat gatggtgcag ccggtctcgt accagaggct aacaatgaga
     5161 ccatggcact tgaaccggtg gctggggctt caatagccgc cccactcacc ggccaaaaca
     5221 atgttataga cccctggatt agattaaatt ttgtgcaggc tcccaatgga gagttcacgg
     5281 tttcaccccg taactcgcct ggggaaatcc tactaaattt ggaattgggc cctgaactga
     5341 atccatacct ggcacacctt tctagaatgt acaatggtta tgcaggtggg gttgaggtgc
     5401 aagtactact ggctgggaac gcgttcacag ctggaaaact ggtgtttgcc gcagttcccc
     5461 ctcactttcc attagaaaat ataagccctg gccaaataac tatgttccct catgtaatta
     5521 ttgatgttag gactttagaa ccagttcttt tgcccctccc agatgtcagg aatagtttct
     5581 ttcattacaa tcagcaaaat gaatcgcgga tgagacttgt agcaatgctt tatactcctc
     5641 ttagatctaa tggctctggt gatgatgtgt tcactgtctc ttgcagggtg cttactcgac
     5701 cttcccctga ttttgatttt aactatttgg ttccccctac tattgagtct aaaactaaac
     5761 ccttcacact ccccatcttg actatagggg agctaaccaa ttccaggttc cctgcgccca
     5821 tagatgagct ctacaccagt cccaatgaga gtttggtggt gcagccccaa aacgggagat
     5881 gcgcgctgga cggggagttg cagggcacga ctcagctcct ccccacggcg atctgctcgt
     5941 tcaggggtcg aatcaaccag aaggtaagtg gagagaacca tgtctggaat atgcaggtca
     6001 ccaacaccaa cggaacccct tttgatccaa cagaagatgt cccggcccct ctaggcactc
     6061 cagacttctc tggcaagctc tttggtgttt tgagccagag ggaccacgat aatgcatgta
     6121 ggagccatga tgcagtgatt gcaaccaact ctgccaaatt caccccaaaa ttgggcgcta
     6181 tacaaattgg cacatgggaa gaagatgatg tacacatcaa ccaacctacc aaatttactc
     6241 cagttggctt atttgaacat gaagatttca gtcagtggac actccccaac tattctggtg
     6301 ccttaacact taatatggga ttagcccctc ctgttgcccc cacctttcct ggtgaacaaa
     6361 ttctcttctt tagatcccac attcctctta aaggaggtgt agcagaccca gttattgatt
     6421 gtcttttgcc ccaggagtgg attcaacatc tttaccaaga gtcagcccct tcacaatctg
     6481 atgtagcact gattaggttc acaaatccag acacaggacg tgttctattt gaggcaaaat
     6541 tacataggag tggttacatt acagtggcca acactggtag cagaccgatt gtggtaccag
     6601 ctaacggtta cttcagattt gactcttggg ttaatcagtt ctattctctc gcccccatgg
     6661 gaactgggaa cgggcgcagg agggtgcagt aatggctgga gcttttatag cagggcttgc
     6721 tggtgacata gtcaccaaca gcgttggctc acttgtgaac gccggggcta atgcaataaa
     6781 tcaaaaagta gactttgaaa ataacaaaca attacaacag gcttctttca atcatgacaa
     6841 agaaatgctg caagctcaaa tccaggctac caaacagcta caggctgaaa tgattgcaat
     6901 cagacaaggg gtgttgaccg cgggcggctt ctcccccact gatgcagcaa gaggggcagt
     6961 caatgcaccc atgactcagg tcttggactg gaacgggact aggcattggg cccccggtgc
     7021 cacaagaact accgctttct ccggtgggtt caccagtgct tctcatgcca gaacagttga
     7081 cttgaccaag agaacatcag ccacgccagc ccctatgcct gtttctagac ccagttctac
     7141 tgtctccact gtctccaccc gctcaacctt gattagcggg tcctctaacc cttcttcttc
     7201 agctaggagt tcctctagcg tctcttccca acccacctcc tcctcctctc ggaccagtga
     7261 gtgggtgcgt agtcaaaaca gggtgctgga gccttatatg agaggggcgc tgcacacagc
     7321 atatgtgacg cccccctcta gtagggcttc tagtaatggc acagtctcaa ccgtgccaaa
     7381 agaggttttg gactcctgga catctgcgtt caacacccgc agacaaccgc tattcgctca
     7441 tctccgtcgg agaggggagt cacaagctta gtgaaaagat gatcttttct tcctttcttt
     7501 tgaaaatttc tgtcttttaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaa
//