Typing tool

Complete norovirus genomes

LC145805  GII.2
 GII.P16

Length: 7,482 | 3 CDS

ORF1: 1..5094
ORF2: 5075..6703
ORF3: 6703..7482
LOCUS       LC145805                7482 bp    RNA     linear   VRL 12-JAN-2018
DEFINITION  Norovirus Hu/GII.2/Hiroshimacity5_2014_JP genes for polyprotein,
            VP1, VP2, complete cds.
ACCESSION   LC145805
VERSION     LC145805.1
KEYWORDS    .
SOURCE      Norovirus Hu/GII.2/Hiroshimacity5_2014_JP
  ORGANISM  Norovirus Hu/GII.2/Hiroshimacity5_2014_JP
            Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
            Picornavirales; Caliciviridae; Norovirus.
REFERENCE   1
  AUTHORS   Motomura,K., Boonchan,M., Noda,M., Tanaka,T. and Takeda,N.
  CONSRTM   Norovirus Surveillance Group of Japan
  TITLE     Norovirus epidemics caused by new GII.2 chimera viruses in
            2012-2014 in Japan
  JOURNAL   Infect. Genet. Evol. 42, 49-52 (2016)
   PUBMED   27112386
  REMARK    DOI:10.1016/j.meegid.2016.04.026
REFERENCE   2  (bases 1 to 7482)
  AUTHORS   Motomura,K. and Boonchan,M.
  TITLE     Direct Submission
  JOURNAL   Submitted (09-APR-2016) Contact:Kazushi Motomura Osaka University,
            Research Institute of Microbial Diseases; 3-1, Yamada-oka, Suita,
            Osaka 565-0871, Japan
FEATURES             Location/Qualifiers
     source          1..7482
                     /organism="Norovirus Hu/GII.2/Hiroshimacity5_2014_JP"
                     /mol_type="genomic RNA"
                     /strain="Hu/GII.2/Hiroshimacity5_2014_JP"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:1834915"
                     /country="Japan:Hiroshima, Hiroshima city"
                     /collection_date="2014"
     CDS             1..5094
                     /note="contains N-terminal, NTPase, 3A, VPg, 3Cpro and
                     3Dpol"
                     /codon_start=1
                     /product="polyprotein"
                     /protein_id="BAV19442.1"
                     /translation="MKMASNDATVAVACNNNNDKEKSSGEGLFTNMSSTLKKALGARP
                     KQPAPRDNSQKPPRPPTPELVKRIPPPPPNGEEEPVIRFEVKSGISGLPDLTTVPQPD
                     ATNTAFSVPPLSLRENREAKEPLTGAIIEMWDGEIYHYGLYVEKGLVLGVHKPPAAIS
                     MAKVELAPLSLYWRVVYTPQYLISPDTLKRLNGEAFPYTAFDNNCYAFCCWVLDLNDS
                     WLSRRMVQRTTGFFRPYQEWNRKPLPTMDDSKIKKVANIFLCSLSTLFTRPIKDIIGK
                     IKPLNILNILATCDWTFAGIVESLILFAELFGVYWTPPDVSAMIAPLLGEYELQGPED
                     IAVELVPVVMGGIGLVLGFTKEKIGKMLSSAASTLRACKDLGAYGLEILKLVMKWFFP
                     KKEEANELAMVRAIEDAVLDLEAIENNHMTTLLKDKDSLATYMKTLDLEEEKARKLST
                     KSASPDIVGTINALLARIAAARSLVHRAKEELSSRIRPVVVMISGKPGIGKTHLAREV
                     AKKVASTLTGDQRVGLIPRNGVDHWDAYKGERVVLWDDYGMSNPIHDALRIQELADTC
                     PLTLNCDRIENKGKVFDSDVIIITTNLANPAPLDYVNFEACSRRIDFLVYADAPEVEK
                     AKRDFPGQPDMWKDAFKADFSHIKLQLAPQGGFDKNGNTPHGKGVMKTLTTGSLIARA
                     SGLLHERMDEFELQGPTITTFNFDRNRVTAFRQLAAENKYGLVDTMRIGNQLKGVKTM
                     EELKQAIKNVSIKRCQIIYHGSTFDLESDGKGKVTVEKVKNTTVQTNNELAGALHHLR
                     SARIRYYVKCVQEAIYSILQIAGAAFVTTRIARRMNIQELWSKPPLDQSESEVKEETP
                     KLEDDEFIISSKDIKEEGKKGKNKTGRGKKHTAFSSKGLSDEEYDEYKRIREERNGKY
                     SIEEYLQDRDRYYEELAIAKATEEDFCEEEEIKIRQRIFRPTRKQRKEERATLGLVTG
                     SEIRKRNPDDFKPKGKLWADDNRSVDYNEKLDFEAPPSIWSRIVSFGSGWGFWVSPSL
                     FITSTHVIPTGITEAFGVSIKQIQVHKSGEFCRFRFPKPIRPDVTGMILEEGAPEGTV
                     ATVLIKRPTGELMPLAARMGTHATMKIQGRMVGGQMGMLLTGSNAKGMDLGTTPGDCG
                     CPYIYKRGNDYIVIGVHTAAARGGNTVICATQGSEGEATLEGGDDKGTYCGAPILGPG
                     GAPKLSTKTKFWRSSNTPLPPGTYEPAYLGGRDPRVKGGPSLQQVMRDQLKPFTEPRG
                     KPPRPSVLEAAKQTIINVLEQTLDPPQKWTYAQACASLDKTTSSGHPHHARKNEFWNG
                     ETFTGKLADQASKANLMFEEGKHMTPVYTAALKDELVKTDKIYGKIKKRLLWGSDLST
                     MVRCARAFGGLMDEMKAHCISLPIRVGMNMNEDGPIIFEKHSRYKYHYDADYSRWDST
                     QQRAVLAAALEIMVRFSAEPQLAQTVAEDLLAPSVVDVGDFKISINEGLPSGVPCTSQ
                     WNSISHWLLTLCALSEVTNLSPDIVQANSMFSFYGDDEIVSTDIKLDPEKLTTKLREY
                     GLKPTRPDKTEGPLIISEDLDGLTFLRRTVSRDPAGWFGKLDQSSILRQMYWTRGPNH
                     EDPNETMIPHSQRPIQLMALLGEASLHGPSFYSKISKLVITELKEGGMDFYVPRQEPM
                     FRWMRFSDLSTWEGDRNLAPSFVNEDGVE"
     CDS             5075..6703
                     /codon_start=1
                     /product="VP1"
                     /protein_id="BAV19443.1"
                     /translation="MKMASNDAAPSTDGAAGLVPESNSEVMALEPVAGAALAAPVTGQ
                     TNIIDPWIRANFVQAPNGEFTVSPRNSPGEVLLNLELGPELNPYLAHLARMYNGYAGG
                     MEVQVMLAGNAFTAGKLVFAAVPPHFPVENLSPQQITMFPHVIIDVRTLEPVLLPLPD
                     VRNNFFHYNQKDDPKMRIVAMLYTPLRSNGSGDDVFTVSCRVLTRPSPDFDFTYLVPP
                     TVESKTKPFTLPILTLGELSNSRFPVSIDQMYTSPNEVISVQCQNGRCTLDGELQGTT
                     QLQVSGICAFKGEVTAHLHDNDHLYNVTITNLNGSPFDPSEDIPAPLGVPDFQGRVFG
                     VISQRDKHNTPGHNEPANRAHDAVVPTYTAQYTPKLGQIQIGTWQTDDLAVNQPVKFT
                     PVGLNDTDHFNQWVVPRYAGALNLNTNLAPSVAPVFPGERLLFFRSYIPLKGGYGTPA
                     IDCLLPQEWVQHFYQEAAPSMSEVALVRYINPDTGRALFEAKLHRVGFMTVSSNTSAP
                     VVVPANGYFRFDSWVNQFYSLAPMGTGNGRRRIQ"
     CDS             6703..7482
                     /codon_start=1
                     /product="VP2"
                     /protein_id="BAV19444.1"
                     /translation="MAGAFVAGLAGDVLSNGLSSLINAGANAINQRAEFDFNQRLQQN
                     SFNHDKEMLQAQVQATKQLQADMMAIKQGVLAAGGFSPADAARGAVNAPMTQALDWNG
                     TRYWAPGSMRTTAYSGKFTSTAPVRQADFQHTQSRPSSGSSVSSFATQSSRPTLTTTT
                     GSSYGTASSNSTRSTNLSQSTVSRATSRTGEWVRDQNRNLEPYMHGALQTAFVTPPSS
                     RASDGTVSTVPKGVLDSWTPAFNTRRQPLFAHLRKRGESQA"
ORIGIN      
        1 atgaagatgg cgtctaacga cgctaccgtt gccgttgctt gcaacaacaa caacgacaag
       61 gaaaaatctt cgggtgaagg cttatttaca aatatgtctt ccaccctaaa gaaagccctc
      121 ggggctcggc ctaaacagcc tgccccgagg gacaactcac aaaaaccccc gagaccacca
      181 acgcccgagt tggttaaaag gataccccct cccccaccta atggcgaaga agagccagtc
      241 attaggtttg aggtcaagag tggaatttct ggcctgcccg atctcacgac agttccccaa
      301 ccagatgcga ccaatacggc attcagtgtt ccaccgttga gcttaagaga aaacagggag
      361 gctaaggaac cgctaactgg ggcaataata gagatgtggg atggagagat ataccactat
      421 ggtttgtatg tggagaaagg cctagtcttg ggtgtgcaca aaccacccgc agctataagc
      481 atggcaaagg tggaattagc accgctgtcg ttatactggc gtgtggtgta cactccccaa
      541 tacctcatct cccctgacac tctcaagagg ctcaacggag aggcattccc ttacaccgcc
      601 tttgataata actgttatgc cttttgctgc tgggtgttag accttaatga ctcatggctc
      661 agcagaagaa tggtgcagag gacgacaggc ttcttcagac cctaccaaga gtggaacaga
      721 aagcccctac ccaccatgga tgattccaaa attaagaagg tggcaaacat attcctatgc
      781 tcattatcta cactgttcac taggcctata aaagacatca tagggaaaat caaaccactg
      841 aatattttaa acattctggc aacgtgtgat tggacgttcg ccggaatcgt agaatcccta
      901 atattatttg ctgaactctt tggagtttac tggacacccc cagatgtgtc tgctatgatc
      961 gctcccttac ttggcgaata cgagttgcag ggaccagaag acatcgccgt tgagctcgta
     1021 cctgtagtga tgggggggat tggtttggtg ctaggattca ccaaagagaa aattggcaaa
     1081 atgctgtcct cagcagcgtc gacgctcagg gcttgcaaag accttggtgc ctatggttta
     1141 gagatactca aattagtcat gaaatggttt ttcccaaaga aagaagaagc caatgaacta
     1201 gccatggtga gagcaataga ggatgctgtt ctggatcttg aggcgataga aaacaatcac
     1261 atgacaactc tgctgaaaga taaagacagc cttgcaacct acatgaaaac actggaccta
     1321 gaggaggaga aagccagaaa actgtccacg aaatctgcat ctcctgacat agttgggaca
     1381 atcaacgccc tgctggctcg aatagcggcg gctagatcac tagtccacag ggccaaggag
     1441 gagttatcta gcagaatcag accagttgtc gttatgatat ctggtaagcc agggataggc
     1501 aagacccact tggccaggga ggtggcgaaa aaggtggcgt ccactctcac aggagatcaa
     1561 agagttggac tcataccgag aaacggtgtg gaccattggg atgcatacaa aggtgaaagg
     1621 gtcgtgttgt gggatgacta tggcatgagt aaccctattc atgatgcact gcgcatacag
     1681 gaattggccg acacatgccc cctcaccttg aattgtgaca gaattgaaaa taagggaaaa
     1741 gtttttgata gtgatgttat aataattaca acaaaccttg ccaacccagc tcctcttgat
     1801 tatgtcaact ttgaggcctg ttccaggaga attgacttcc tggtgtacgc cgatgcgcca
     1861 gaagtggaaa aggcaaaacg ggatttccct ggtcaaccag acatgtggaa ggacgccttc
     1921 aaagcggact tctcgcacat caagttgcaa cttgcgcctc agggcggctt tgacaagaat
     1981 ggcaacaccc cacatgggaa aggagtgatg aagaccctta ccaccggttc tctaatcgcc
     2041 cgtgcgtcag gtttgctaca tgagaggatg gatgaatttg aacttcaggg ccccacaatc
     2101 accactttca actttgaccg gaacagagtc accgctttca gacaactggc tgctgagaac
     2161 aaatatgggc tggtggacac catgaggatt ggcaatcaat tgaaaggggt gaaaaccatg
     2221 gaagagctca agcaagctat caagaatgtg tccatcaaga ggtgccagat tatctaccat
     2281 ggatccacgt ttgaccttga gtctgatggc aagggtaaag ttacagtgga aaaggtcaaa
     2341 aacaccactg ttcagaccaa caacgaattg gccggagccc tgcaccacct cagaagtgct
     2401 cgaatcaggt attatgtcaa atgtgtgcaa gaggcaatct attccatcct acaaattgcc
     2461 ggcgccgcgt ttgtcaccac acgcattgca cgccgcatga atatacaaga gctttggtca
     2521 aagccaccat tagaccaaag cgagtcagag gttaaggagg agacccccaa gttagaggat
     2581 gatgaattca tcatctcctc caaggacatt aaggaggaag ggaagaaggg caaaaacaaa
     2641 actggccgtg gcaagaaaca cactgcattc tctagcaagg gcctgagcga tgaggagtat
     2701 gacgagtaca agaggataag agaagagaga aatgggaagt actctataga ggagtatctt
     2761 caagacaggg acaggtacta tgaagaactc gccatcgcca aggccacgga agaagacttt
     2821 tgtgaggagg aagaaataaa aatccgccag cggatctttc gtcccactag aaaacaaagg
     2881 aaggaggaaa gggccacgtt agggctagtg actggttcgg aaatcagaaa aagaaaccct
     2941 gatgacttca aacctaaagg gaaattgtgg gccgacgaca acagaagtgt tgactacaat
     3001 gaaaaactgg actttgaggc ccccccaagc atatggtcta ggatcgtaag ctttggttca
     3061 ggttggggct tctgggtgtc accaagcctg tttataacat caactcatgt gatccctacg
     3121 ggtataacag aggcatttgg agtctctatc aaacagattc aagttcacaa atcgggcgag
     3181 ttttgtcggt tcagattccc aaaaccaatt agaccagatg taacaggaat gatcctggaa
     3241 gaaggtgcgc cagagggcac cgtagcaacc gtgctcatca agcgccccac tggagaactc
     3301 atgcccctcg cagctagaat gggaacacac gcaaccatga aaattcaggg ccgcatggtt
     3361 ggtgggcaga tgggcatgtt gctcactggt tcaaatgcta agggtatgga tctagggaca
     3421 actcccggtg actgtggctg cccgtatatt tacaaaaggg gcaatgacta catagtcatt
     3481 ggagtgcaca cagcagcagc ccgaggtggt aatactgtca tctgtgccac acagggaagt
     3541 gagggtgaag cgaccctcga gggtggagac gacaaaggaa catactgtgg ggcacccatc
     3601 ctgggccctg gaggggcgcc aaagttaagc acaaaaacca aattttggag atcatcaaac
     3661 acgccccttc caccagggac atatgagcct gcctaccttg gcggtcgtga tccgcgtgta
     3721 aagggtgggc cttccctaca acaagtcatg agagaccagt taaagccctt caccgagcct
     3781 aggggtaagc ccccgagacc tagtgtgttg gaggcagcca aacagaccat catcaacgtt
     3841 ctcgagcaaa ctttggatcc cccacaaaaa tggacgtacg cacaggcgtg cgcttcactt
     3901 gataaaacca cctctagtgg gcacccccat cacgctcgaa agaatgaatt ctggaacggt
     3961 gagaccttta ccggtaagtt ggcagaccaa gcatcaaaag caaacttaat gtttgaggaa
     4021 gggaaacata tgacaccagt gtatacagca gcccttaagg atgagttggt taaaaccgac
     4081 aaaatctatg ggaagatcaa gaaacgcctg ctttggggct ctgatttatc caccatggtc
     4141 cgatgtgcta gggcctttgg tggactcatg gacgagatga aggcgcactg catatcgctc
     4201 ccaatccgag ttggcatgaa tatgaatgag gatggcccaa taatatttga gaagcactcc
     4261 agatataaat atcactatga tgcagattac tctcgctggg actcaacaca acagagggct
     4321 gttctagcag cggccttgga aataatggtc agattctctg cagaaccgca actggcccaa
     4381 acagttgctg aggatctgct ggcccccagt gtagtagatg tcggagactt caaaatttca
     4441 ataaatgagg gactcccttc tggtgtacca tgcacttccc agtggaattc catctcacat
     4501 tggttactga ctctctgtgc tttgtctgaa gtcaccaatc tgtctcctga catcgtgcag
     4561 gcaaattcta tgttctcatt ttacggtgat gacgagatcg tcagcaccga tataaaattg
     4621 gaccctgaaa agttgaccac caaattgagg gagtatggtc taaagccaac tcgcccagac
     4681 aaaaccgagg ggcccctgat catcagtgag gatttggacg gtctcacctt ccttcggagg
     4741 acggtttctc gtgacccagc tggttggttt ggaaagttag atcaaagctc aatactaaga
     4801 cagatgtatt ggaccagagg accaaaccat gaagacccca atgagacaat gataccccac
     4861 tctcaaagac ccatacagct catggcactg cttggtgagg cctcccttca cggaccctct
     4921 ttctacagca agattagtaa attggtcata actgaactca aagaaggtgg gatggacttt
     4981 tacgtgccaa gacaggagcc catgttcaga tggatgaggt tttctgactt gagcacgtgg
     5041 gagggcgatc gcaatctggc tcccagtttt gtgaatgaag atggcgtcga atgacgccgc
     5101 tccatctact gatggtgcag ccggcctcgt gccagaaagt aatagtgagg tcatggctct
     5161 tgaacccgtg gctggcgccg ccttggcagc cccagtcacc ggtcaaacaa atataataga
     5221 cccttggatt agagcaaatt ttgtccaggc ccccaatggt gaatttacag tctctccccg
     5281 taactcccct ggtgaagtgc tattgaatct agagttgggt ccagaattaa atccttatct
     5341 ggcacattta gcaagaatgt acaatgggta tgccggtggg atggaggtgc aggtcatgtt
     5401 ggctgggaat gcgttcacag ccggcaagtt agtcttcgcc gctgtgccac cccacttccc
     5461 ggttgaaaac cttagcccac agcaaattac catgttccct catgtgatta tagatgtcag
     5521 gactttggaa cctgttttat taccactccc tgatgttagg aataacttct tccattataa
     5581 tcagaaagat gatcccaaga tgagaattgt ggctatgctt tacacccccc ttaggtctaa
     5641 tggttcaggc gatgatgtgt ttacagtctc ctgcagggtg ttgactagac cctcccctga
     5701 ttttgatttc acatatctgg tgccaccaac agtggaatct aaaacaaaac cattcactct
     5761 cccaatcctc acgcttgggg aactttccaa ttctagattc ccagtgtcca tagaccagat
     5821 gtacaccagc cccaatgaag tcatatcagt gcagtgtcaa aatggcaggt gcacactgga
     5881 tggggaactc caaggaacga cacaactcca agtcagtggc atttgtgctt tcaagggaga
     5941 agtgactgcc cacttgcatg acaatgacca cctgtataat gtcaccatca caaatttgaa
     6001 tgggtcccct tttgacccct ccgaggacat ccccgcccct ctgggcgtac ctgactttca
     6061 gggaagggtc tttggtgtca tctcccaaag agacaaacac aacacccctg gacacaatga
     6121 accagcaaac agggcacacg atgccgtggt ccctacttat acagcacagt ataccccaaa
     6181 attgggtcag attcaaattg gcacatggca gactgacgat ctcgcagtca accaaccagt
     6241 caaattcacc ccagttggac ttaatgacac tgaccatttt aaccaatggg tggtccccag
     6301 gtatgctggt gccctaaacc ttaacacaaa cctcgcccct tctgttgctc cagtatttcc
     6361 aggggagcgt ctgctctttt tcagatcata catccccctc aagggcggtt atggaactcc
     6421 agccatcgat tgcctactgc cacaagagtg ggtgcaacat ttctatcagg aagcagcccc
     6481 ttcgatgagt gaggtggccc ttgtcagata catcaacccg gacactggtc gggcactgtt
     6541 tgaggccaaa ctccacagag ttggtttcat gacagtctcg agcaacacca gtgccccggt
     6601 ggttgtgcct gccaacggat acttcaggtt tgattcttgg gtgaaccaat tctattctct
     6661 cgcccccatg ggaactggaa atgggcgcag aaggattcaa taatggctgg agcttttgta
     6721 gctggtcttg caggggacgt gctcagcaat gggctcagtt cattaattaa tgcaggtgct
     6781 aatgcaataa atcagagggc agaatttgat tttaatcaga gattacagca aaactctttc
     6841 aatcatgata aggagatgtt gcaggcccag gtccaggcaa ctaagcagct gcaggcagac
     6901 atgatggcta taaaacaggg ggtcctggcc gctggcggct tttcccctgc tgatgcagcc
     6961 agaggtgctg tgaacgcgcc catgacacag gcgctggatt ggaacggcac aaggtattgg
     7021 gcaccaggct ccatgaggac tacagcctac tctgggaaat tcacatcaac cgccccagtg
     7081 aggcaggctg attttcagca cacccaaagt cggccctcga gtggttcttc tgtgtcctcc
     7141 tttgctactc agtcttcaag gccgaccctg actacaacca ctgggtcctc atatggcaca
     7201 gcctcatcaa attcgactcg cagcacaaac ctctcccaat caacggtctc cagggctaca
     7261 tctaggactg gtgaatgggt tagagaccaa aacagaaatt tggaacctta catgcatggt
     7321 gccttacaga cggcctttgt caccccgcct tccagcaggg cgtctgatgg gacggtctca
     7381 accgttccaa aaggtgtttt ggactcctgg acacctgcgt ttaacacccg caggcagccg
     7441 cttttcgcac acctccgtaa gaggggggag tcacaagctt ag
//