Typing tool

Complete norovirus genomes

LC145792  GII.2
 GII.P16

Length: 7,482 | 3 CDS

ORF1: 1..5094
ORF2: 5075..6703
ORF3: 6703..7482
LOCUS       LC145792                7482 bp    RNA     linear   VRL 12-JAN-2018
DEFINITION  Norovirus Hu/GII.2/Saitama5_2012_JP genes for polyprotein, VP1,
            VP2, complete cds.
ACCESSION   LC145792
VERSION     LC145792.1
KEYWORDS    .
SOURCE      Norovirus Hu/GII.2/Saitama5_2012_JP
  ORGANISM  Norovirus Hu/GII.2/Saitama5_2012_JP
            Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
            Picornavirales; Caliciviridae; Norovirus.
REFERENCE   1
  AUTHORS   Motomura,K., Boonchan,M., Noda,M., Tanaka,T. and Takeda,N.
  CONSRTM   Norovirus Surveillance Group of Japan
  TITLE     Norovirus epidemics caused by new GII.2 chimera viruses in
            2012-2014 in Japan
  JOURNAL   Infect. Genet. Evol. 42, 49-52 (2016)
   PUBMED   27112386
  REMARK    DOI:10.1016/j.meegid.2016.04.026
REFERENCE   2  (bases 1 to 7482)
  AUTHORS   Motomura,K. and Boonchan,M.
  TITLE     Direct Submission
  JOURNAL   Submitted (09-APR-2016) Contact:Kazushi Motomura Osaka University,
            Research Institute of Microbial Diseases; 3-1, Yamada-oka, Suita,
            Osaka 565-0871, Japan
FEATURES             Location/Qualifiers
     source          1..7482
                     /organism="Norovirus Hu/GII.2/Saitama5_2012_JP"
                     /mol_type="genomic RNA"
                     /strain="Hu/GII.2/Saitama5_2012_JP"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:1834902"
                     /country="Japan:Saitama"
                     /collection_date="2012"
     CDS             1..5094
                     /note="contains N-terminal, NTPase, 3A, VPg, 3Cpro and
                     3Dpol"
                     /codon_start=1
                     /product="polyprotein"
                     /protein_id="BAV19403.1"
                     /translation="MKMASNDATVAVACNNNNDKEKSSGEGLFTNMSSTLKKALGARP
                     KQPAPRDNPQKPPRPPTPELVKRIPPPPPNGEEEPVIRFEVKSGISGLPDLTTVPQPD
                     AINTAFSVPPLSLRENREAKEPLTGAIIEMWDGEIYHYGLYVEKGLVLGVHKPPAAIS
                     MAKVELAPLSLYWRVVYTPQYLISPDTLKRLNGEAFPYTAFDNNCYAFCCWVLDLNDS
                     WLNRRMVQRTTGFFRPYQEWNRKPLPTMDDSKIKKVANIFLCSLSTLFTRPIKDIIGK
                     IKPLNILNILATCDWTFAGIVESLILFAELFGVYWTPPDVSAMIAPLLGEYELQGPED
                     IAVELVPVVMGGIGLVLGFTKEKIGKMLSSAASTLRACKDLGAYGLEILKLVMKWFFP
                     KKEEANELAMVRAIEDAVLDLEAIENNHMTALLKDKDSLATYMKTLDLEEEKARKLST
                     KSASPDIVGTINALLARIAAARSLVHRAKEELSSRIRPVVVMISGKPGIGKTHLAREV
                     AKKVASTLTGDQRVGLIPRNGVDHWDAYKGERVVLWDDYGMSNPIHDALRIQELADTC
                     PLTLNCDRIENKGKVFDSDVIIITTNLANPAPLDYVNFEACSRRIDFLVYAEAPEVEK
                     AKRDFPGQPDMWKDAFKADFSHIKLQLAPQGGFDKNGNTPHGKGVMKTLTTGSLIARA
                     SGLLHERMDEFELQGPAITTFNFDRNRVTAFRQLAAENKYGLVDTMRIGNQLKGVKTM
                     EELKQAIKNVSIKRCQIIYHGSTFDLESDGKGKVTVEKVKNTTVQTNNELAGALHHLR
                     SARIRYYVKCVQEAIYSILQIAGAAFVTTRIARRMNIQELWSKPPLDQSEPEVKEETP
                     KLEDDEFIISSKDIKEEGKKGKNKTGRGKKHTAFSSKGLSDEEYDEYKRIREERNGKY
                     SIEEYLQDRDRYYEELAIAKATEEDFCEEEEIKIRQRIFRPTRKQRKEERATLGLVTG
                     SEIRKRNPDDFKPKGKLWADDNRSVDYNEKLDFEAPPSIWSRIVSFGSGWGFWVSPSL
                     FITSTHVIPSGITEAFGVPIKQIQVHKSGEFCRFRFPKPIRPDVTGMILEEGAPEGTV
                     ATVLIKRPTGELMPLAARMGTHATMKIQGRMVGGQMGMLLTGSNAKGMDLGTTPGDCG
                     CPYIYKRGNDYIAIGVHTAAARGGNTVICATQGSEGEATLEGGDDKGTYCGAPILGPG
                     GAPKLSTKTKFWRSSNTPLPPGTYEPAYLGGRDPRVKGGPSLQQVMRDQLKPFTEPRG
                     KPPRPSVLEAAKQTIINVLEQTLDPPQKWTYAQACASLDKTTSSGHPHHARKNEFWNG
                     ETFTGKLADQASKANLMFEEGKHMTPVYTAALKDELVKTDKIYGKIKKRLLWGSDLST
                     MVRCARAFGGLMDEMKAHCISLPIRVGMNMNEDGPIIFEKHSRYKYHYDADYSRWDST
                     QQRAVLAAALEIMVRFSAEPQLAQTVAEDLLAPSVVDVGDFKISINEGLPSGVPCTSQ
                     WNSISHWLLTLCALSEVTNLSPDIVQANSMFSFYGDDEIVSTDIKLDPEKLTTKLREY
                     GLKPTRPDKTEGPLIISEDLDGLTFLRRTVSRDPAGWFGKLDQSSILRQMYWTRGPNH
                     EDPNETMIPHSQRPIQLMALLGEASLHGPSFYSKISKLVITELKEGGMDFYVPRQEPM
                     FRWMRFSDLSTWEGDRNLAPSFVNEDGVE"
     CDS             5075..6703
                     /codon_start=1
                     /product="VP1"
                     /protein_id="BAV19404.1"
                     /translation="MKMASNDAAPSTDGAAGLVPESNNEVMALEPVAGAALAAPVTGQ
                     TNIIDPWIRANFVQAPNGEFTVSPRNSPGEVLLNLELGPELNPYLAHLARMYNGYAGG
                     MEVQVMLAGNAFTAGKLVFAAVPPHFPVENLSPQQITMFPHVIIDVRTLEPVLLPLPD
                     VRNNFFHYNQKDDPKMRIVAMLYTPLRSNGSGDDVFTVSCRVLTRPSPDFDFTYLVPP
                     TVESKTKPFTLPILTLGELSNSRFPVSIDQMYTSPNEVISVQCQNGRCTLDGELQGTT
                     QLQVSGICAFKGEVTAHLHDNDHLYNVTITNLNGSPFDPSEDIPAPLGVPDFQGRVFG
                     VISQRDKHNTPGHNEPANRAHDAVVPTYTAQYTPKLGQIQIGTWQTDDLTVNQPVKFT
                     PVGLNDTDHFNQWVLPRYAGALNLNTNLAPSVAPVFPGERLLFFRSYIPLKGGYGTPA
                     IDCLLPQEWVQHFYQEAAPSMSEVALVRYINPDTGRALFEAKLHRAGFMTVSSNTSAP
                     VVVPANGYFRFDSWVNQFYSLAPMGTGNGRRRIQ"
     CDS             6703..7482
                     /codon_start=1
                     /product="VP2"
                     /protein_id="BAV19405.1"
                     /translation="MAGAFVAGLAGDVLSNGLSSLINAGANAINQRAEFDFNQRLQQN
                     SFNHDKEMLQAQVQATKQLQADMMAIKQGVLAAGGFSPADAARGAVNAPMTQALDWNG
                     TRYWAPGSMRTTAYSGRFTSTAPVRQADFQHTQSRPSSGSSVSSFATQSSRPTLTTTT
                     GSSYGTASSNSTRSTNLSQSTVSRATSRTGEWVRDQNRNLEPYMHGALQTAFVTPPSS
                     RASDGTVSTVPKGVLDSWTPAFNTRRQPLFAHLRKRGESQA"
ORIGIN      
        1 atgaagatgg cgtctaacga cgctaccgtt gccgttgctt gcaacaacaa caacgacaag
       61 gaaaaatctt cgggtgaagg cttatttaca aatatgtctt ccaccctaaa gaaagccctc
      121 ggggctcggc ctaaacagcc tgccccgagg gacaacccac aaaaaccccc aagaccacca
      181 acgcccgagt tggttaaaag gataccccct cccccaccta atggcgaaga agagccagtc
      241 attaggtttg aggtcaagag tggaatttct ggcctgcccg atctcacgac agttcctcaa
      301 ccagatgcga tcaatacggc attcagtgtt ccaccgttga gcttaagaga aaacagggag
      361 gccaaggaac cgctaactgg ggcaataata gagatgtggg atggagagat ataccactat
      421 ggtttgtatg tggagaaagg tctagtcttg ggtgtacaca aaccacccgc agctataagc
      481 atggcaaaag tggaattagc accgctgtcg ttatactggc gtgtggtgta cactccccaa
      541 tacctcatct cccctgacac tctcaagagg ctcaacggag aggcattccc ctacaccgcc
      601 tttgataata actgttatgc cttttgctgc tgggtgctag accttaatga ctcatggctc
      661 aacagaagaa tggtgcagag aacgacaggc ttcttcagac cctaccaaga gtggaacaga
      721 aagcccctgc ccaccatgga tgattccaaa attaagaagg tggcaaacat attcctatgt
      781 tcattgtcca cactgttcac caggcctata aaagacatca tagggaaaat caaaccactg
      841 aatatcttaa acattctggc aacgtgtgac tggacgttcg ccggaatcgt agagtctcta
      901 atattatttg ctgaactctt tggagtttac tggacacccc cagatgtgtc tgctatgatc
      961 gctcccttac ttggcgaata cgagttgcag ggaccagaag acatcgccgt tgagctcgta
     1021 cctgtagtga tgggggggat tggtttggtg ctaggattca ccaaagagaa aattggcaaa
     1081 atgctgtcct cagcagcgtc aacgctcagg gcttgcaaag accttggtgc ctatggttta
     1141 gagatactca aattagtcat gaaatggttt ttcccaaaga aagaagaagc caatgaacta
     1201 gccatggtga gagcaataga ggatgctgtt ctggatcttg aggcgataga aaacaatcac
     1261 atgacagccc tgctgaaaga caaagacagc cttgcaacct acatgaaaac actggatcta
     1321 gaggaggaga aagccagaaa actgtccacg aaatctgcat ctcctgacat agttgggaca
     1381 atcaacgccc tactggctcg aatagcggcg gctagatcac tagtccacag ggccaaggag
     1441 gagctatcta gcagaatcag accagttgtc gttatgatat ctggcaagcc agggataggc
     1501 aagacccact tggccaggga ggtggcgaaa aaggtggcgt ccactctcac aggagatcaa
     1561 agagttggac tcataccgag aaacggtgtg gaccattggg atgcatacaa aggtgaaagg
     1621 gtcgtgttgt gggatgacta tggcatgagc aaccctattc atgatgcact gcgcatacag
     1681 gaattggccg acacatgccc cctcaccttg aattgtgaca gaattgaaaa taagggaaaa
     1741 gtttttgata gtgatgttat aataattaca acaaacctcg ccaacccagc tcctcttgat
     1801 tatgtcaact ttgaagcctg ttccaggaga attgacttcc tggtgtacgc cgaagcgcca
     1861 gaagtggaaa aggcaaaacg ggatttccct ggtcaaccag atatgtggaa ggacgccttc
     1921 aaagcggact tctcgcacat caagttgcaa cttgcgcctc agggcggctt cgacaagaat
     1981 ggcaacaccc cacatgggaa aggagtgatg aagaccctta ccaccggttc tctgatcgcc
     2041 cgtgcgtcag gtttgctaca tgagaggatg gatgaatttg aacttcaggg ccccgcaatc
     2101 accactttca actttgaccg gaacagagtc accgctttca gacaactggc tgctgagaac
     2161 aaatatgggc tggtggacac catgaggatt ggcaaccaat tgaaaggggt gaaaaccatg
     2221 gaagaactca agcaagctat caagaatgtg tccatcaaga ggtgccagat tatctaccat
     2281 ggatccacgt ttgaccttga gtctgatggc aagggtaaag ttacagtaga aaaggtcaaa
     2341 aacaccactg ttcagaccaa caacgaattg gccggagccc tgcaccacct cagaagtgct
     2401 cgaatcaggt attatgtcaa atgtgtgcaa gaggcaatct attccatcct acaaattgcc
     2461 ggcgccgcgt tcgtcaccac acgcattgca cgccgcatga atatacaaga gctttggtca
     2521 aagccaccat tagaccaaag cgagccagag gttaaggagg agacccccaa gttagaggat
     2581 gatgaattca tcatttcctc caaggacatt aaggaggaag ggaagaaggg caaaaacaaa
     2641 actggccgtg gcaagaaaca cactgcattc tctagcaagg gcttgagcga tgaggagtat
     2701 gacgagtaca agaggataag agaagagaga aatgggaagt actctataga ggagtatctt
     2761 caagacaggg acaggtacta tgaagaactc gccatcgcca aggccacgga agaagacttt
     2821 tgtgaggagg aagaaataaa aatccgccag cggatctttc gtcccactag aaaacaaagg
     2881 aaggaagaaa gggccacgtt agggctagtg actggttcag aaatcagaaa aagaaaccct
     2941 gatgacttca aacctaaagg aaaattgtgg gccgacgaca acagaagtgt tgactacaat
     3001 gaaaaactgg actttgaggc ccccccaagc atatggtcta ggatcgtaag ttttggttca
     3061 ggttggggct tctgggtgtc accaagcctg tttataacat caactcatgt gatcccttcg
     3121 ggtataacag aggcatttgg agtccccatc aaacagattc aagtccacaa atcaggcgag
     3181 ttttgtcggt tcagattccc aaaaccaatt agaccagatg taacaggaat gatcctggaa
     3241 gaaggtgcgc cagagggcac cgtagcaacc gtgctcatca agcgccccac tggagaactc
     3301 atgcccctcg cagctagaat gggaacacac gcaaccatga aaattcaggg ccgcatggtt
     3361 ggtgggcaga tgggcatgtt gctcactggt tcaaatgcta agggtatgga tctggggaca
     3421 actcccggtg actgtggctg cccgtatatt tacaaaaggg gcaatgacta catagccatt
     3481 ggagtgcaca cagcagcagc ccgaggtgga aatactgtca tctgtgccac acagggaagt
     3541 gagggcgagg cgaccctcga gggtggagac gacaaaggaa catactgtgg ggcacccatc
     3601 ctgggccctg gaggggcgcc aaagttaagc acaaaaacca aattttggag gtcatcaaac
     3661 acgccccttc caccagggac atatgagcct gcctaccttg gtggtcgtga tccgcgtgta
     3721 aagggtgggc cttccctaca acaagtcatg agagatcagt taaagccctt caccgagccc
     3781 aggggtaaac ccccgagacc tagtgtgctg gaggcagcca aacagaccat catcaacgtt
     3841 ctcgagcaaa ctttggatcc tccacaaaaa tggacgtacg cacaggcgtg cgcttcactt
     3901 gataaaacca cctctagtgg gcacccccat cacgctcgaa agaatgaatt ctggaacggt
     3961 gagaccttta ccggtaagtt ggcagaccag gcatcaaaag caaacttaat gtttgaggaa
     4021 gggaaacata tgacaccagt atacacagca gcccttaagg atgagttggt taaaaccgac
     4081 aaaatctatg ggaagatcaa gaaacgcctg ctttggggct ctgatttatc caccatggtc
     4141 cgatgtgcta gggcctttgg tggactcatg gacgagatga aggcgcactg catatcgctc
     4201 ccaatccgag ttggcatgaa tatgaatgag gatggcccaa taatatttga gaagcactcc
     4261 agatataaat atcactatga tgcagattac tctcgctggg actcaacaca acagagggct
     4321 gttctagcgg cggccttgga aataatggtc agattctctg cagaaccgca actggcccaa
     4381 acagttgctg aggatctgct ggcccccagt gtagtagatg tcggggactt caaaatttca
     4441 ataaatgagg gactcccttc tggtgtacca tgcacttccc agtggaactc catctcacac
     4501 tggttactaa ctctctgtgc tttgtctgaa gtcaccaatc tgtctcctga catcgtgcag
     4561 gcaaattcta tgttctcatt ttacggtgat gacgagatcg tcagcaccga tataaaattg
     4621 gaccctgaaa agttaaccac caaattgagg gagtatggtc taaaaccaac tcgcccagac
     4681 aaaaccgagg ggcccttgat catcagtgag gatttggacg gtctcacctt cctccggagg
     4741 acggtttctc gtgacccagc cggttggttt ggaaagttag atcagagctc aatactaagg
     4801 cagatgtatt ggaccagagg accaaaccat gaagacccca atgagacaat gataccccac
     4861 tctcaaagac ccatacagct catggcactg cttggtgagg cctcccttca cggaccctct
     4921 ttctacagca agattagtaa attggtcata actgaactca aagaaggtgg gatggacttt
     4981 tacgtgccaa gacaggaacc catgttcaga tggatgaggt tttctgactt gagcacgtgg
     5041 gagggcgatc gcaatctggc tcccagtttt gtgaatgaag atggcgtcga atgacgccgc
     5101 tccatctact gatggtgcag ccggcctcgt gccagaaagt aataatgagg tcatggctct
     5161 tgaacccgtg gctggtgccg ccttggcagc cccagtcacc ggtcaaacaa atataataga
     5221 cccttggatt agagcaaatt ttgtccaggc ccccaatggt gaatttacag tctctccccg
     5281 taactcccct ggtgaagtgc tattgaatct agagttgggt ccagaattaa atccttatct
     5341 ggcacattta gcaagaatgt acaatgggta tgccggtggg atggaggtgc aggtcatgtt
     5401 ggctgggaac gcgttcacag ccggcaagtt agtcttcgcc gctgtgccac cccacttccc
     5461 ggtcgaaaac cttagcccac agcaaattac catgttccct catgtgatta tagatgtcag
     5521 gactttggaa cctgttttat taccactccc tgatgttaga aataacttct tccattacaa
     5581 tcagaaagat gatcccaaga tgagaattgt ggctatgctt tatacccccc ttaggtctaa
     5641 tggttcaggc gatgatgtgt ttacagtctc ctgcagggtg ctgactagac cctcccctga
     5701 ttttgatttc acatatctgg tgccaccaac agtggaatct aaaacaaaac cattcactct
     5761 cccaatcctc acgcttgggg aactttccaa ttctagattc ccagtgtcca tagaccagat
     5821 gtacaccagc cccaatgaag tcatatcagt acagtgtcaa aatggcaggt gcacactgga
     5881 tggggaactc caaggaacaa cacaactcca agtcagtggc atttgtgctt tcaagggaga
     5941 agtgactgcc cacttgcatg acaatgatca cctgtataat gtcaccatca caaacttgaa
     6001 tgggtcccct tttgacccct ccgaggacat ccccgcccct ctgggcgtac ctgactttca
     6061 gggaagggtc tttggtgtca tctcccaaag agacaaacac aatacccctg gacataatga
     6121 accagcaaac agggcacacg atgccgtggt ccctacttat acagcacagt ataccccaaa
     6181 attgggtcag attcaaattg gcacatggca gactgacgat ctcacagtca accaaccagt
     6241 caaattcacc ccagttggac ttaatgacac tgaccatttt aaccaatggg tgctccccag
     6301 gtatgctggt gccctaaacc ttaacacaaa ccttgcccct tctgttgctc cagtatttcc
     6361 aggggagcgt ctgctctttt tcagatcata catccccctc aagggtggct atggaactcc
     6421 agccatcgat tgcctactac cacaagagtg ggtgcaacat ttctatcagg aagcagcccc
     6481 ttcgatgagt gaggtggccc ttgtcagata catcaacccg gatactggtc gggcactgtt
     6541 tgaggccaaa ctccacagag ctggtttcat gacagtctca agcaacacca gtgccccggt
     6601 ggttgtgcct gccaacggat acttcagatt tgattcttgg gtgaaccaat tctattctct
     6661 cgcccccatg ggaactggaa atgggcgcag aaggatccaa taatggctgg agcttttgta
     6721 gctggtcttg caggggacgt gctcagcaat gggctcagtt cattaattaa tgcaggtgct
     6781 aatgcaataa atcagagggc agaatttgat ttcaatcaga gattacagca aaattctttc
     6841 aatcatgata aggagatgtt gcaggcccag gtccaggcaa ctaagcagct gcaggcagat
     6901 atgatggcta taaaacaggg ggttctggcc gctggcggct tttcccctgc tgatgcagcc
     6961 agaggtgctg tgaacgcgcc catgacacag gcgctggatt ggaacggcac aaggtattgg
     7021 gcaccaggct ccatgaggac tacagcctac tctgggagat tcacatcaac cgccccagtg
     7081 aggcaggccg attttcagca cacccaaagc cggccttcga gtggttcttc tgtgtcctcc
     7141 tttgctactc agtcttcaag gccgaccctg actacaacca ctgggtcctc atatggcaca
     7201 gcctcatcaa attcgactcg cagcacaaac ctctcccaat caacggtctc cagggctaca
     7261 tctaggactg gtgaatgggt tagagaccaa aacagaaatc tggaacctta catgcatggt
     7321 gccttacaga cagcctttgt cactccacct tccagcaggg cgtctgatgg gacggtctca
     7381 accgttccaa aaggtgtttt ggactcctgg acacctgcgt ttaacacccg caggcagccg
     7441 cttttcgcac acctccgtaa gaggggggag tcacaagctt ag
//