Typing tool

Complete norovirus genomes

LC145787  GII.2
 GII.P16

Length: 7,485 | 3 CDS

ORF1: 1..5097
ORF2: 5078..6706
ORF3: 6706..7485
LOCUS       LC145787                7485 bp    RNA     linear   VRL 12-JAN-2018
DEFINITION  Norovirus Hu/GII.2/Miyagi1_2012_JP genes for polyprotein, VP1, VP2,
            complete cds.
ACCESSION   LC145787
VERSION     LC145787.1
KEYWORDS    .
SOURCE      Norovirus Hu/GII.2/Miyagi1_2012_JP
  ORGANISM  Norovirus Hu/GII.2/Miyagi1_2012_JP
            Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
            Picornavirales; Caliciviridae; Norovirus.
REFERENCE   1
  AUTHORS   Motomura,K., Boonchan,M., Noda,M., Tanaka,T. and Takeda,N.
  CONSRTM   Norovirus Surveillance Group of Japan
  TITLE     Norovirus epidemics caused by new GII.2 chimera viruses in
            2012-2014 in Japan
  JOURNAL   Infect. Genet. Evol. 42, 49-52 (2016)
   PUBMED   27112386
  REMARK    DOI:10.1016/j.meegid.2016.04.026
REFERENCE   2  (bases 1 to 7485)
  AUTHORS   Motomura,K. and Boonchan,M.
  TITLE     Direct Submission
  JOURNAL   Submitted (09-APR-2016) Contact:Kazushi Motomura Osaka University,
            Research Institute of Microbial Diseases; 3-1, Yamada-oka, Suita,
            Osaka 565-0871, Japan
FEATURES             Location/Qualifiers
     source          1..7485
                     /organism="Norovirus Hu/GII.2/Miyagi1_2012_JP"
                     /mol_type="genomic RNA"
                     /strain="Hu/GII.2/Miyagi1_2012_JP"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:1834897"
                     /country="Japan:Miyagi"
                     /collection_date="2012"
     CDS             1..5097
                     /note="contains N-terminal, NTPase, 3A, VPg, 3Cpro and
                     3Dpol"
                     /codon_start=1
                     /product="polyprotein"
                     /protein_id="BAV19388.1"
                     /translation="MKMASNDANVAVAYNNNNDKEKSSGEGLFTNMSSTLKKALGARP
                     KQSAPRDNSQKPPRPPTPELVKRIPPPPPNGEEEEPVIRYEVKSGISGLPELTTVPQP
                     DVANTAFSVPPLSLRENREAKEPLTGAILEMWDGEIYHYGLYVEKGLVLGVHKPPAAI
                     SMAKVELTPLSLYWRVVYTPQYLISPETLRRLNGEAFPYTAFDNNCYAFCCWVLDLND
                     SWLNRRMVQRTTGFFRPYQEWNRKPLPTMDDSKIKKVANIFLCSLSTLFTRPIKDLIG
                     KIKPLNILNILATCDWTFAGIVESLILLAELFGVFWTPPDVSAMIAPLLEDYELQGPE
                     DLAVELVPVVMGGIGLVLGFTKEKIGKMLSSAASTLRACKDLGAYGLEILKLVMKWFF
                     PKKEEANELAMVRAIEDAVLDLEAIENNHMTTLLKDKDSLATYMKTLDMEEEKARRLS
                     TKSASPDIVGTINALLARIAAARSLVHRAKEELSSRIRPVVVMISGKPGIGKTHLARE
                     VARKVASTLTGDQRVGLIPRNGVDHWDAYKGERVVLWDDYGMSNPIHDALRIQELADT
                     CPLTLNCDRIENKGKVFDSEVIIITTNLANPAPLDYVNFEACSRRIDFLVYAEAPEVE
                     KAKRDFPGQPDMWKDAFKSDFSHIKLQLAPQGGFDKNGNTPHGKGVMKTLTTGSLIAR
                     ASGLLHERMDEFELQGPTVTTFNFDRNRITAFRQLAAENKYGLVDTMRVGNQLKGVKT
                     MEELKQAIKNVIIKRCRIIYGGSTYDLESDGKGKVLVEKVKNTSIQTNNELAGALHHL
                     KHARIRYYVRCVQEAVYSIIQIAGAAFVTTRIARRMNIQELWSKPPLDQNESEAKEEA
                     PKSEDDEFIISSKDIKEEGKKGKNKTGRGRKHTAFSSKGLSDEEYDEYKRIREERNGK
                     YSIEEYLQDRDRYYEELAIAKATEEDFCEEEEVKIRQRIFRPTRKQRKEERATLGLVT
                     GSEIRKRNPDDFKPKGKLWADDNRSVDYNEKLDFEAPPSIWSRIVSFGSGWGFWVSPS
                     LFITSTHVIPAGITEAFGVPIKQIQVHKSGEFCRFRFPKPIRPDVTGMILEEGAPEGT
                     VATVLIKRPTGELMPLAARMGTHATMKIQGRMVGGQMGMLLTGSNAKGMDLGTTPGDC
                     GCPYIYKRGNDYIVIGVHTAAARGGNTVICATQGSEGEATLEGGDDKGTYCGAPILGP
                     GGAPKLSTKTKFWRSSNTPLPPGTYEPAYLGGRDPRVKGGPSLQQVMRDQLKPFTEPR
                     GKPPRPSVLEAAKQTIINVLEQTLDPPQKWTYAQACASLDKTTSSGHPHHVRKNEFWN
                     GETFTGKLADQASKANLMFEEGKHMTPVYTAALKDELVKTDKVYGKIKKRLLWGSDLS
                     TMIRCARSFGGLMDEMKAHCISLPVRVGMNMNEDGPIIFEKHSRYKYHYDADYSRWDS
                     TQQRAVLAAALEIMVRFSAEPQLAQIVAEDLLAPSVVDVGDFKISINEGLPSGVPCTS
                     QWNSIAHWLLTLCALSEVTKLSPDIVQANSMFSFYGDDEIVSTDIKLDPEKLTTKLKE
                     YGLKPTRPDKTEGPLIISEDLNGLTFLRRTVTRDPAGWFGKLDQSSILRQMYWTRGPN
                     HEDPNETMIPHSQRPIQLMALLGEASLHGPSFYSKISKLVITELKEGGMDFYVPRQEP
                     MFRWMRFSDLSTWEGDRNLAPNFVNEDGVE"
     CDS             5078..6706
                     /codon_start=1
                     /product="VP1"
                     /protein_id="BAV19389.1"
                     /translation="MKMASNDAAPSTDGAAGLVPESNNEVMALEPVAGAALAAPVTGQ
                     TNIIDPWIRANFVQAPNGEFTVSPRNAPGEVLLSLELGPELNPYLAHLARMYNGYAGG
                     MEVQVMLAGNAFTAGKLVFAAVPPHFPVENLSPQQITMFPHVIIDVRTLEPVLLPLPD
                     VRNNFFHYNQKDDPKMRIVAMLYTPLRSNGSGDDVFTVSCRVLTRPSPDFDFTYLVPP
                     TVESKTKPFTLPILTLGELSNSRFPVSIDQMYTSPNEVISVQCQNGRCTLDGELQGTT
                     QLQVSGICAFKGEVTAHLHDNDHLYNVTITNLNGSPFDPSEDVPAPLGVPDFQGRVFG
                     IISQRDKHNSPGHNEPANRGHDAVVPTYTAQYTPKLGQIQIGTWQTDDLTVNQPVKFT
                     PVGLNDTEHFNQWVVPRYAGALNLNTNLAPSVAPVFPGERLLFFRSYVPLKGGYGNPA
                     IDCLLPQEWVQHFYQEAAPSMSEVALVRYINPDTGRALFEAKLHRAGFMTVSSNTSAP
                     VVVPANGYFRFDSWVNQFYSLAPMGTGNGRRRVQ"
     CDS             6706..7485
                     /codon_start=1
                     /product="VP2"
                     /protein_id="BAV19390.1"
                     /translation="MAGAFMAGLAGDVLSNGLSSLINAGANAINQRAEFDFNQKLQQN
                     SFNHDKEMLQAQIQATKQLQADMMAIKQGVLTAGGFSPADAARGAVNAPMTQALDWNG
                     TRYWAPGSMRTTSYSGKFTSIAPVRQADFQHTQSRPSSGSSVSSFATQSSRPTLTTTT
                     GSSHGTASSNSTRSTGLSQSTVSRATSRTSEWVRDQNRNLEPYMHGALQTAFVTPPSS
                     RASDGTVSTVPKGVLDSWTPAFNTRRQPLFAHLRKRGESHA"
ORIGIN      
        1 atgaagatgg cgtctaacga cgctaacgtt gccgttgctt acaacaacaa caacgacaag
       61 gaaaaatctt caggtgaagg cttattcaca aatatgtctt ccaccttaaa gaaagccctc
      121 ggggcccggc ccaaacagtc cgccccgagg gacaactcac aaaagccccc aagaccacca
      181 actcccgagt tggttaagag gataccccct cccccaccta atggtgaaga agaagagcca
      241 gtcattaggt atgaggttaa gagtgggatc tctggcctgc ccgagctcac aacagtcccc
      301 caaccggatg tggccaacac ggcattcagt gtcccaccgc tgagcttgag agaaaacagg
      361 gaggccaagg aaccgctgac aggggcaata ttagagatgt gggatggaga gatataccac
      421 tatggcctgt acgtggagaa aggcttagtg ttgggtgtgc acaaaccacc tgcagctata
      481 agcatggcaa aagtggagct gacgccgttg tcattgtact ggcgtgtggt ctacaccccc
      541 caatacctca tctcccctga aactctcagg aggctcaacg gagaggcatt cccttacacc
      601 gcctttgaca acaattgcta tgccttttgc tgctgggtat tagacctcaa tgactcatgg
      661 cttaacagga ggatggtaca aagaacaaca ggcttcttca gaccttacca agagtggaac
      721 agaaaacccc tgcctactat ggatgactcc aaaatcaaga aggtggcaaa catattcctg
      781 tgttcattgt ccacgttgtt caccagacct ataaaagacc tcataggaaa aattaaacca
      841 ttaaacatct tgaacatcct ggcaacgtgt gactggacat tcgccggaat agtggagtct
      901 ctgatattac ttgctgaact ctttggagtt ttctggacac ccccagatgt gtctgctatg
      961 atcgctccct tacttgaaga ctacgagttg caagggccag aagacctcgc cgttgagctc
     1021 gtacctgtgg taatgggagg gattggtttg gtgttgggat tcaccaaaga gaaaattggc
     1081 aaaatgttgt cctcagcagc atcaacgctc agggcttgta aggatcttgg tgcctatggc
     1141 ttagagatac tcaaattggt catgaagtgg ttcttcccaa agaaagaaga ggccaatgag
     1201 ctagccatgg tgagagctat agaggatgct gtgttggatc ttgaggcaat agaaaataat
     1261 cacatgacaa ctctgttgaa agacaaagac agcctagcaa cctacatgaa aacactagac
     1321 atggaagagg agaaagccag aagattgtcc acaaaatctg catcccctga catagttggg
     1381 acgatcaacg ccctgctggc tcgaatagca gcggctaggt cattagtcca cagggccaag
     1441 gaggagttat ctagcaggat aagaccagta gttgttatga tatctggcaa accagggata
     1501 ggtaaaactc atttggccag ggaggtggca agaaaggtgg catccactct cacaggggat
     1561 caaagagtcg ggctcatacc gagaaacggt gtggaccact gggatgcata caaaggtgag
     1621 agagtcgtgc tgtgggacga ctatggcatg agcaacccca ttcatgatgc tttgcgcata
     1681 caagaattgg ctgatacgtg tccccttacc ttaaattgcg acagaattga aaataaggga
     1741 aaagtttttg acagtgaagt cataataatc acaacaaacc ttgccaatcc agctccactt
     1801 gattatgtca actttgaggc ctgttccagg agaattgact tcctggtgta cgccgaggca
     1861 ccagaagtag aaaaggcaaa acgagacttt cctggtcaac cagatatgtg gaaggacgcc
     1921 ttcaagtcgg acttttcaca tatcaagttg caacttgcac ctcagggcgg ctttgacaag
     1981 aatggtaaca ccccacatgg gaaaggagtg atgaagaccc tcaccaccgg ttccctgatt
     2041 gcccgtgcat caggcttact gcatgagagg atggatgaat ttgaactcca aggccccaca
     2101 gttaccacct tcaatttcga ccggaacaga atcaccgcat tcagacaatt ggccgcagaa
     2161 aacaagtatg ggttggtgga caccatgaga gttggcaatc aattaaaagg ggtgaaaacc
     2221 atggaagaac tcaaacaagc aatcaagaat gtgatcatca agaggtgccg gatcatctac
     2281 ggtggctcca cgtatgacct tgaatctgat ggcaagggca aagttttggt ggaaaaggtc
     2341 aagaacacct ctatacagac caacaacgag ttggctggag ccctgcatca cctcaaacat
     2401 gcccgaatca ggtattatgt cagatgtgtg caagaagcag tttactctat catacaaatt
     2461 gccggcgctg cgtttgtcac cacacgcatt gcacgccgca tgaacataca agagctttgg
     2521 tcgaagccac cattagacca aaatgaatca gaggctaagg aagaggcccc caagtcagaa
     2581 gatgacgagt tcatcatatc ttctaaggac atcaaggagg aaggaaagaa gggcaaaaac
     2641 aaaactggcc gtggcaggaa acacactgca ttctctagca agggcttgag cgatgaggag
     2701 tatgacgagt acaagaggat aagagaagag agaaatggga agtactctat agaggagtat
     2761 cttcaagaca gagacaggta ctatgaggaa ctcgccatcg ccaaggccac ggaagaagac
     2821 ttctgtgagg aggaggaggt caaaatccgt cagaggatct tccgtcccac caggaaacaa
     2881 aggaaggaag agagggctac actaggacta gtaactggtt cagaaatcag aaaaagaaac
     2941 cctgatgact tcaaacctaa agggaaactg tgggccgatg acaacagaag tgttgactac
     3001 aatgagaaac tggactttga ggccccccca agcatatggt ctaggattgt gagttttggt
     3061 tctggttggg gcttctgggt atcaccaagc ctgttcataa catcaactca tgtaatccct
     3121 gcaggcataa cagaggcatt tggagtcccc atcaaacaaa tccaggtcca caaatcaggt
     3181 gaattttgcc ggttcagatt cccaaaacca attagaccag atgtgacagg aatgatattg
     3241 gaagaaggtg cgcctgaggg caccgtggca accgtactca tcaaacgccc taccggagag
     3301 ctcatgcccc ttgcagccag aatggggaca cacgcaacca tgaagattca aggccgcatg
     3361 gttggcggac agatgggtat gttgctcact ggttcaaatg ctaaaggaat ggatttggga
     3421 acaactcctg gtgattgtgg ctgtccctac atctacaaaa ggggcaatga ctatatagtc
     3481 attggggtgc acacagcagc agcccgtggt ggaaacaccg tcatctgtgc cacacaggga
     3541 agtgagggtg aggcaactct tgagggtgga gatgacaaag gaacatactg tggagcaccc
     3601 attctaggcc ccgggggggc accaaaattg agcaccaaaa ccaaattttg gaggtcatcg
     3661 aacacgcctc ttccaccagg gacatatgag cctgcctacc tcggtggccg tgacccgcgt
     3721 gttaagggtg ggccctcctt gcagcaggta atgagagacc agttgaaacc attcactgaa
     3781 cccaggggta aacctccaag accaagtgtg ttggaggcag ccaaacaaac catcatcaat
     3841 gtcctcgaac aaaccctgga ccctccacaa aaatggacat acgcacaggc gtgtgcttca
     3901 cttgacaaaa ccacctccag cgggcatccc caccacgtcc gaaagaatga attctggaat
     3961 ggtgagacct tcactggtaa attggcagac caagcatcaa aagcaaatct gatgtttgag
     4021 gaagggaaac acatgacacc agtgtataca gcagccctca aggacgagct ggtcaagact
     4081 gacaaagtct atggaaagat caagaagaga ctgctctggg gctctgactt gtccaccatg
     4141 atccggtgcg ccaggtcctt tggtgggctt atggatgaga tgaaggcaca ctgcatatca
     4201 ctcccagtcc gagttggcat gaacatgaat gaagatggtc caataatatt tgagaagcac
     4261 tccagataca agtaccacta tgatgcagac tactcccgct gggattcaac acaacagagg
     4321 gcagtactag cagcagcctt ggaaatcatg gtcaggttct ctgcagagcc acaattggca
     4381 cagatagtcg ctgaggatct gctggccccc agtgtggtag atgtaggaga ctttaaaatt
     4441 tcaataaatg aggggctccc ctctggtgta ccatgcactt ctcaatggaa ttccatcgca
     4501 cactggctgc taaccctctg tgccttgtct gaagtcacca aactgtcccc tgacattgta
     4561 caggcaaatt ccatgttctc attttacggt gatgacgaga ttgtcagcac cgatataaaa
     4621 ttggaccctg aaaagttaac caccaaattg aaggagtatg gcctgaaacc aactcgccca
     4681 gacaaaaccg agggacccct gatcatcagt gaggatttga atggactcac tttcctccgg
     4741 aggacggtga ctcgtgaccc agctggctgg tttggaaaat tggaccaaag ttcaatattg
     4801 aggcagatgt actggactag aggaccaaat catgaagacc ccaatgagac aatgataccc
     4861 cactctcaaa gacccataca gctcatggca ctgcttggtg aggcctccct tcacggaccc
     4921 tctttctaca gcaaaatcag taaattggtc ataactgaac tcaaagaagg tgggatggac
     4981 ttttacgtgc caagacagga acccatgttc agatggatga ggttttctga cttgagcacg
     5041 tgggagggcg atcgcaatct ggctcccaat tttgtgaatg aagatggcgt cgaatgacgc
     5101 cgctccatct actgatggtg cagccggcct cgtgccagaa agtaacaatg aggtcatggc
     5161 tcttgaaccc gtggctggtg ccgccttggc agcaccggtc accggtcaaa caaatattat
     5221 agacccttgg attagagcaa attttgtcca ggcccccaat ggcgaattta cagtctctcc
     5281 ccgtaatgcc cctggtgaag tgctattaag tctagaattg ggtccagaat taaatcctta
     5341 tctggcacat ttagcaagaa tgtacaacgg gtatgccggt gggatggagg tgcaggtcat
     5401 gttggctggg aatgcgttca cagccggcaa gttggtcttc gccgctgtgc cacctcactt
     5461 cccggttgaa aaccttagcc cacagcaaat taccatgttc cctcatgtga ttatagatgt
     5521 aaggaccttg gaacctgttt tattaccact ccctgatgtt aggaataatt tcttccatta
     5581 taatcagaaa gatgatccca aaatgagaat tgtggctatg ctttataccc cccttagatc
     5641 taatggttca ggtgatgatg tgttcacagt ttcctgcagg gtgttgacca gaccctcccc
     5701 tgatttcgat ttcacatatc tggtgccacc aacagtggaa tctaaaacaa aaccattcac
     5761 cctcccaatc ctcacacttg gggaactttc caattctagg ttcccagtgt ccatagacca
     5821 gatgtacacc agccctaatg aagttatatc agtgcagtgt caaaatggta ggtgcacatt
     5881 ggacggggaa cttcaaggga caacacaact ccaagtcagt ggcatttgtg ctttcaaggg
     5941 ggaagtgacc gcccatttgc atgacaatga tcacctatac aatgtcacca tcacaaactt
     6001 gaatgggtcc ccttttgacc cctccgagga cgttcctgcc cctctgggcg tgcctgattt
     6061 ccagggaagg gtctttggta ttatctccca aagagacaaa cataatagcc ctgggcataa
     6121 tgaaccagca aacaggggac acgacgctgt ggtccctact tacacagcac agtacactcc
     6181 aaaattgggt cagattcaaa ttggcacatg gcagaccgat gatcttacag tcaaccaacc
     6241 agtcaaattc accccagttg gactcaatga cactgaacat tttaatcaat gggtggtccc
     6301 cagatacgct ggtgccctaa acctcaacac aaaccttgcc ccttctgttg ctccggtatt
     6361 tccaggggag cgcctgcttt tcttcagatc atacgttccc ctcaagggtg gttatggaaa
     6421 tccagccatt gattgcctat taccacaaga gtgggtgcaa cacttctatc aggaagctgc
     6481 cccatcaatg agtgaggtgg cccttgtcag atacatcaac ccggatactg gtcgggcact
     6541 gtttgaggcc aagctccaca gagctggttt catgacagtc tcgagcaaca ccagtgcccc
     6601 ggtggttgtg cctgccaatg ggtacttcag atttgactct tgggttaatc aattctattc
     6661 tctcgccccc atgggaactg gaaatgggcg tagaagggtt caataatggc tggagctttt
     6721 atggctggtc ttgcagggga cgtgctcagc aatgggctca gttcattaat taatgcaggt
     6781 gctaatgcaa taaatcagag ggcagaattt gattttaatc agaaattaca gcaaaattct
     6841 ttcaatcatg ataaggagat gttgcaggcc cagattcagg caactaagca gctgcaggca
     6901 gacatgatgg ctataaaaca gggggtcctg accgctggcg gcttttcccc tgctgatgca
     6961 gccagaggtg ctgtgaatgc gcccatgaca caggcgctgg attggaacgg cacaaggtat
     7021 tgggcaccag gctctatgag gaccacatct tattctggaa aattcacatc aatcgcccca
     7081 gtgaggcagg ccgacttcca gcacacccaa agccggcctt cgagtggctc ttctgtgtcc
     7141 tcctttgcca ctcagtcttc aaggccaact ctgaccacaa ccactgggtc ctcacatggc
     7201 acagcctcat caaattcaac tcgcagcaca ggcctctccc aatcaacggt ctctagagct
     7261 acatctagga ctagtgagtg ggttagagat caaaatagaa atttggaacc ctacatgcat
     7321 ggtgccttac agacggcctt tgtcacccca ccttccagca gggcgtctga cgggacagtc
     7381 tcaaccgtcc caaaaggtgt tttggactcc tggacacctg cgttcaacac ccgcaggcag
     7441 ccgctctttg cacacctccg taagaggggg gagtcacatg cctag
//