Typing tool

Complete norovirus genomes

KX158281  GII.6
 GII.P7

Length: 7,539 | 3 CDS

ORF1: 125..5086
ORF2: 5067..6710
ORF3: 6710..7513
LOCUS       KX158281                7539 bp    RNA     linear   VRL 03-DEC-2016
DEFINITION  Norovirus GII strain 14-55, complete genome.
ACCESSION   KX158281
VERSION     KX158281.1
KEYWORDS    .
SOURCE      Norovirus GII
  ORGANISM  Norovirus GII
            Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
            Picornavirales; Caliciviridae; Norovirus.
REFERENCE   1  (bases 1 to 7539)
  AUTHORS   Nasheri,N., Ronholm,J. and Petronella,N.
  TITLE     Norovirus Genome sequencing and assembly
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 7539)
  AUTHORS   Nasheri,N., Ronholm,J. and Petronella,N.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-APR-2016) Bureau of Microbial Hazards, Health Canada,
            251 Sir Frederick Banting Driveway, Ottawa, ON K1A 0K9, Canada
COMMENT     ##Assembly-Data-START##
            Assembly Method       :: SPAdes v. 3.7.1
            Assembly Name         :: 14-55
            Coverage              :: 223x
            Sequencing Technology :: Illumina
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..7539
                     /organism="Norovirus GII"
                     /mol_type="genomic RNA"
                     /strain="14-55"
                     /host="Homo sapiens"
                     /db_xref="taxon:122929"
                     /country="Canada"
                     /collection_date="2015"
                     /note="genotype: GII"
     CDS             125..5086
                     /codon_start=1
                     /product="ORF1"
                     /protein_id="APE73905.1"
                     /translation="MLGAVPKGTKAPSGDQHCPSVKIGTKTLTVPPEPPNGEDTVQFD
                     AKSETVRGLPDLTTVQNEHENTPYTVPPLSEREHRPATEPLPGTILEMWDGEFYHYSV
                     YVSGGKALGVHKPPAAISLATIELTPISLYWRPVYTPNYLVCPDTLKGLAGEKFPYTA
                     FSNNCYNFCCWVLELNDTWLSRRSISRTTGFFKPYQSWNRKPLPTVDDGKIKKVANAI
                     LCALGSLFSKPIKDLLGKLKPLNLLHLLASCDWTFAGIVETVILMAELFNIFWTPPDV
                     SSFIASLIGDFELQGPEDLAVELVPVVMGGIGMVLGFTAEKIGRMLSSAASTLRACKD
                     LGNYALDILKLVMKWFFPKKEEKAEMETLRAIEDAVLDMEAIGNNHLTTLLKDKDSLM
                     AFMKTLDLEEEKARKLSTKSSSPDIVGTINAILARIAAARSLLHKAKEEMFSRIRPAV
                     VMISGRPGIGKTHMARHLAKSIANTMSGDQRVGLIPRNGVDHWDAYRGERVVLWDDYG
                     MGNPVKDALTLQELADTCPVTLNCDRIENKGKMFDSDVIIITTNLVNPAPLDYVNFEA
                     CSRRVDFLVYAESPEIEKVKRDFPGQPDMWKDHFKPDFSHIKLTLAPQGGFDKNGNTP
                     HGKGTMRSLTQGSLTARVAGLVHERRDEFQLQGNDLQTYNFDTNRVSAFRKLAADNKY
                     GIMETMRVGTALKSVKTLEDLKVALRDVKFNECEIIYRNSKYRVSSNGKGSVSVDKVE
                     DQTSQTANEVGAALLRLRQARARYYVSCFQDLVYTLIQVAGASFVVNRISKRFCWERW
                     VKPTETQETSESEKEVAQGRWEIEPKDTEPEGKKGKNKKGRGKKHTAFSSKGLSDEEY
                     DEFKRIREERNGKYSIEEYLQDRDRYYEEVAVARATEEDFCEEEEAKIRQRIFRPTKK
                     QRKEERGVLGLVTGSDIRKRRPDDFQPKGNLWADDTRSVDYNERLDFEAPPSVWSRIV
                     PLGTGWGFWVSSNLLITTTHVLPKGVKELFGVEIKQIQIHKSGEFCRFRFPRPIRPDV
                     TGLVLEEGAPEGTVCSILVKRPTGEMIPLAVRMGTHASMKIQGRTVGGQMGMLLTGAN
                     AKNMDLGTGPGDCGCPYIYKRGNDIVVAGVHTAAARGGNTVICATQGQDGEAVLEGNE
                     NLGTYCGAPILGPGKAPKLSTKTKFWRSSPDALPPGTYEPAYLGGKDPRVEKGPSLQQ
                     VMRDQLKPFTEPRGKPPRPAVLEEAKKTVMNVLEQIIDPAKPWTYSQACASLDKTTSS
                     GSPHHVRKNDHWNGESFTGPLADQASKANLMYEQAKHVQPVYTAALKDELVKTDKIYK
                     KIKKRLLWGSDLGTMIRCARAFGGLMDSMKASCIALPCRVGMNMNEDGPIIFDKHSKY
                     RYHYDADYSRWDSTQQRSILSAAMEVMVRFSAEPELAQVVAEDLLAPSQLDVGDFVIS
                     VQEGLPSGVPCTSQWNSIAHWILTLSAMAEVSGLSPDVVQAHSCFSFYGDDEIVSTDI
                     NLDPMKLTQKLREYGLVPTRPDKTEGPLVITEDLTGLTFLRRSVARDPAGWFGKLDQD
                     SILRQLYWTRGPNHENPYESMVPHSQRATQLMALLGEASLHGPQFYKKVSKMVISEIK
                     SGGLEFYVPRQEAMFRWMRFSDLSTWEGDRNLAPEGVNEDGVE"
     CDS             5067..6710
                     /codon_start=1
                     /product="VP1"
                     /protein_id="APE73906.1"
                     /translation="MKMASNDAAPSNDGAANLVPEATNEVMALEPVVGASIAAPVVGQ
                     QNIIDPWIRENFVQAPQGEFTVSPRNSPGEMLLNLELGPELNPYLSHLSRMYNGYAGG
                     MQVQVVLAGNAFTAGKIIFAAVPPHFPVENISAAQITMCPHVIVDVRQLEPVLLPLPD
                     IRNRFFHYNQENTPRMRLVAMLYTPLRANSGEDVFTVSCRVLTRPAPDFEFTFLVPPT
                     VESKTKPFTLPILTLGELSNSRFPAPIDMLYTDPNEAIVVQPQNGRCTLDGTLQGTTQ
                     LVPTQICSFRGTLISQTSRSADSTDSAPRVRNHPLHVQLKNLDGTPYDPTDEVPAVLG
                     AIDFKGTVLGVASQRNTTGSSIGATRAHEVHIDTTNPRYTPKLGSVLMHSESTDFDDG
                     QPTRFTPIGMGADDWHQWELPEYSGHLTLNMNLAPAVAPAFPGERILFFRSVVPSAGG
                     YGSGHIDCLIPQEWVQHFYQEAAPSQSAVALIRYVNPDTGRNIFEAKLHREGFITVAN
                     SGNNPIVVPPNGYFRFEAWVNQFYTLTPMGIGQGRRRVQ"
     CDS             6710..7513
                     /codon_start=1
                     /product="VP2"
                     /protein_id="APE73907.1"
                     /translation="MAGAFLAGLAGDAITSGVGSLINAGANAINQKVEYDFNKQLQLA
                     SFKHDKEMLQSQVLATKQLQQEMMNIRQGVLSAGGFSPTDAARGAVNAPMTKILDWNG
                     TRYFAPNSMKTTSYSGQFSSNPVHRQPTLPRSDPPKVKVNSDSASVYSSASFAPSQST
                     HSTALTAGSSSSRTTSSSAASTLSRTSDWVRGQNERLSPFMDGALQTTFVTPPSSKAS
                     SYGSVSTVPKAVLDSWTPMFNTHRQPLFAHVRRRGESQTKPFTLPILTL"
ORIGIN      
        1 ggcgtctaac gacgctacca ctgcctttgg cagccaaaac tctgtcaatg acagtatcaa
       61 caccgcccct tctaataaag aagaggttgg tgcattctcc aacattaaag ttggttttaa
      121 gaaaatgctg ggtgccgttc ccaaggggac caaagcaccc agtggtgatc agcactgccc
      181 ctcagttaag attgggacca agacattaac agttccccct gagcccccaa atggtgaaga
      241 caccgtgcag tttgatgcga agtcggaaac agtgcgcggg ctaccagact tgacaacggt
      301 gcagaatgaa cacgaaaaca caccatacac cgtcccccca ttgagtgaaa gggagcacag
      361 accagccact gaaccgcttc ctggcacaat actggagatg tgggatggtg aattctacca
      421 ttactctgtg tacgtcagcg gtggcaaagc cctaggggtt cacaagcccc ctgcagcgat
      481 aagcctcgcg acgatagagc tcacacccat atctctttat tggaggcccg tttacacccc
      541 caactatctg gtctgtccag acacgttgaa aggccttgct ggtgagaagt tcccctacac
      601 ggccttcagc aacaactgtt acaacttctg ttgctgggtg cttgaactca atgacacgtg
      661 gcttagcagg agaagcatct ctaggactac cggcttcttc aaaccatatc agtcttggaa
      721 taggaaaccc cttccaaccg ttgatgatgg aaagatcaag aaggtggcca acgcaattct
      781 ctgcgcactt ggatcactgt tttcaaaacc aatcaaggac ctattgggca aactcaaacc
      841 attgaacctg ctgcacttgc tcgcatcatg tgactggacg tttgcgggta tagtagagac
      901 agtcatccta atggcggaac ttttcaacat cttttggaca ccgccagatg tttccagttt
      961 catagcctcc ctgataggtg attttgaatt gcaagggcct gaggacctgg ctgtggagct
     1021 tgtccccgtg gtcatgggtg gcataggaat ggttctcggc tttactgctg agaagatagg
     1081 ccgcatgctg tcatccgctg catcaacact acgggcatgc aaagacttgg ggaattatgc
     1141 ccttgacata ttgaaactgg ttatgaagtg gttcttccca aagaaagaag agaaagccga
     1201 gatggaaacc ctaagggcga ttgaggatgc cgtcctggac atggaagcta taggaaacaa
     1261 ccatctcaca accctcctca aggacaagga tagcctcatg gctttcatga agactctaga
     1321 tctagaagag gagaaggcaa ggaagctgtc caccaaatca tcctcgccag acatcgtcgg
     1381 cactattaat gccatactgg ccagaatagc tgctgccagg tccctcttgc acaaggctaa
     1441 agaagaaatg tttagcagga ttagacccgc ggttgtcatg atctcgggta gacctggcat
     1501 tggcaaaacc cacatggcaa gacacttggc taagagtatc gccaacacca tgagcggcga
     1561 ccagagagta ggactcatcc cacgcaacgg ggtcgatcat tgggacgcct acaggggaga
     1621 gagggtggtc ttatgggatg attatggcat gggaaaccct gtcaaagatg ccctaacact
     1681 gcaagagttg gccgacacct gcccagtaac tctaaactgt gataggatcg agaacaaggg
     1741 gaagatgttt gacagtgatg tcatcataat cacgaccaat ctagtcaacc cggcgcccct
     1801 cgattatgta aacttcgagg cgtgctccag aagggtcgac tttctggtct atgcagagtc
     1861 accagaaatt gagaaggtta agagagattt ccccggccaa cctgacatgt ggaaggacca
     1921 ttttaagcca gacttttccc acataaaact gaccctagcc ccacagggtg gatttgataa
     1981 gaatggcaac accccgcatg gtaagggcac catgcgatcc ctaacccagg gttccctgac
     2041 tgcaagggtt gcaggtcttg ttcatgagag gagagacgag tttcagctcc aggggaacga
     2101 ccttcaaaca tacaactttg ataccaacag ggtctctgca tttaggaagc tggccgcaga
     2161 caacaagtat gggatcatgg agactatgag agtgggcaca gcgcttaaga gtgtcaagac
     2221 cttggaggat ctgaaagttg cactgaggga tgtgaagttc aatgagtgtg agataattta
     2281 cagaaactcc aagtaccgag tctcttccaa tggtaaaggt tctgtctctg ttgacaaagt
     2341 tgaggaccaa acatcccaga ctgcaaacga agtgggtgca gcactcctta gactcaggca
     2401 ggcaagagcc agatactatg tcagctgctt ccaagatctc gtttacactc taatacaggt
     2461 cgccggagca tcattcgttg tcaacaggat ctctaaaagg ttctgctggg agagatgggt
     2521 caaaccaacc gagacccagg aaacgagtga atccgaaaag gaagtggccc aaggcagatg
     2581 ggagattgag cccaaggaca cagagccaga aggtaagaag ggtaagaaca agaaaggaag
     2641 aggcaagaaa cacacagctt tctccagtaa aggcctgagt gatgaggagt atgacgagtt
     2701 caagagaatc agagaagaaa ggaacggaaa atactccatt gaggaatacc tgcaagaccg
     2761 ggatcgctac tatgaggaag tggcagttgc ccgggcgaca gaggaggact tctgtgaaga
     2821 ggaggaggcc aagataagac aaagaatctt tcgccccacg aagaaacaga ggaaggaaga
     2881 aaggggggtg cttggtttgg tcactggctc agacatcagg aagagaagac cagacgattt
     2941 tcaaccgaag ggtaacctgt gggcagacga caccaggagt gtggactaca acgagagact
     3001 tgatttcgag gcgcctccga gtgtctggtc gagaatagtc ccattgggca ctggctgggg
     3061 cttctgggtc tcatcaaacc tcctgatcac aacaacacac gtcctgccta agggggttaa
     3121 ggaacttttt ggagttgaaa tcaaacagat tcaaatccat aagtctggag agttctgcag
     3181 gttcaggttc ccgagaccaa ttagaccaga tgtcacaggg ctcgtgttgg aggaaggcgc
     3241 tccagaaggc actgtctgct ccatactcgt aaagagacct acaggtgaga tgatcccctt
     3301 ggcagtgagg atgggcacgc atgcatccat gaaaatacag ggtaggaccg tcggtggcca
     3361 gatgggaatg ctcctcacag gggcaaatgc gaagaacatg gatcttggca ccggtcctgg
     3421 tgactgcggt tgcccttaca tctacaaacg tggcaatgat atagttgtcg cgggtgtcca
     3481 caccgcagca gcccggggag gcaacactgt catatgtgcc actcaagggc aagatgggga
     3541 agcagtcctt gagggaaatg agaaccttgg cacttactgc ggtgccccaa tcttgggtcc
     3601 aggcaaggcg cccaaactta gcacgaagac caagttctgg cgctcatcac cagacgcttt
     3661 gccgccaggc acttatgagc ctgcctactt ggggggtaag gaccccagag tggaaaaagg
     3721 accatctctg cagcaagtca tgagggacca gctaaaacct ttcacagaac ccaggggcaa
     3781 gccacctaga cctgcagtct tagaagaggc caaaaagaca gtgatgaatg ttctagagca
     3841 aatcattgac cctgctaagc cgtggaccta ttcccaagca tgtgcctcac tggacaagac
     3901 cacttccagt ggcagccccc atcatgtcag gaaaaatgac cattggaatg gggaatcctt
     3961 cactggcccc cttgcagacc aagcatccaa agccaacctc atgtacgagc aggccaaaca
     4021 tgtgcagccc gtatacacgg ccgcacttaa agatgaacta gtcaaaactg acaagatcta
     4081 caagaagata aagaaaaggc tcttatgggg gtcggatctt ggcacaatga tcaggtgtgc
     4141 cagggctttt ggcggtctca tggatagcat gaaggcaagt tgcatagccc tcccatgtag
     4201 ggtaggaatg aacatgaatg aagatggtcc cattatattt gacaaacatt ctaagtatag
     4261 gtatcattat gatgctgact attccaggtg ggactcaacc cagcaaagga gcattctctc
     4321 ggccgctatg gaagtgatgg tgcggttctc tgccgaacca gagctggcac aagtggttgc
     4381 agaggacctc ctggcaccca gccaactaga tgttggcgat ttcgtcatct cagtccagga
     4441 gggtctgcca tcaggggttc catgcacatc acaatggaat tcaatagcac actggatcct
     4501 taccttgagt gcaatggcag aagtgtcggg tctctcgcca gatgttgttc aagcccactc
     4561 ctgtttctca ttctacggtg atgatgagat agtcagcact gacatcaacc ttgatcccat
     4621 gaagttgaca cagaaactca gagagtatgg cctggtcccc actcgacctg acaaaactga
     4681 gggtcccctc gtaataactg aagacctcac cggcctaacg ttcctgcgta ggtcagttgc
     4741 acgggaccca gctgggtggt ttgggaaatt ggaccaggac tcaatcctca gacagttgta
     4801 ctggacaagg ggccccaatc atgagaaccc atatgagagc atggtccctc attcccagcg
     4861 ggccacacag cttatggccc ttctcggtga ggcttcactg catggccccc agttttacaa
     4921 gaaggttagc aagatggtca ttagtgagat caaaagtggt ggtctggaat tctatgtgcc
     4981 cagacaagag gccatgttca gatggatgag attttctgac ctcagcacat gggagggcga
     5041 tcgcaatctt gctcccgagg gtgtgaatga agatggcgtc gaatgacgct gctccatcga
     5101 atgatggtgc tgccaacctc gtaccagagg ccaccaatga ggttatggca cttgagccgg
     5161 tggtgggagc ctcaattgct gctcctgtcg tcggccaaca aaatataatt gacccctgga
     5221 ttagagaaaa ttttgttcag gcaccacagg gtgagtttac tgtttcacca aggaactcac
     5281 ctggtgagat gcttctaaat cttgaattag gccctgagct caatccttat ctgagtcact
     5341 tgtcccgcat gtataacggc tatgctggtg gtatgcaggt tcaggtggtc ctagctggga
     5401 atgcgttcac agctggtaaa atcatctttg ccgccgtccc accacatttt cctgttgaga
     5461 acattagtgc agcccaaatt acaatgtgcc cccatgtaat tgttgatgtg agacagcttg
     5521 agccagtgct tttgcccctc cctgatataa ggaatagatt ctttcattat aatcaggaaa
     5581 acacccctcg gatgagactt gtggctatgt tgtacacacc ccttagagca aattctggtg
     5641 aggatgtgtt tacagtgtct tgcagagttc tgacccgccc tgcccccgac tttgagttca
     5701 cgttcttggt gccaccaact gtggagtcaa agactaagcc ctttacactc cctattctga
     5761 ctcttggaga actgtccaac tccagattcc ccgctccgat agatatgttg tacactgacc
     5821 ctaatgaggc aattgtggtg caaccacaaa atggcaggtg cactctagat ggaacacttc
     5881 aagggaccac ccaactggta cccacccaaa tttgctcctt caggggcacg ctaattagcc
     5941 agacgtcgag gtctgcagat tcaacagatt cagccccacg ggtgaggaac caccctctcc
     6001 acgttcagct gaagaacctc gatgggacac catatgaccc aacagatgag gtgccagcag
     6061 ttttgggtgc catagatttc aaaggaactg tgcttggggt cgctagtcaa agaaacacca
     6121 cagggagctc tataggagca acccgcgccc atgaagtgca catagatacc acaaacccta
     6181 gatatacccc aaagcttggc tctgtgttga tgcattctga atccactgat tttgatgatg
     6241 gacagcctac ccgctttacc cccattggca tgggagccga tgattggcac caatgggaat
     6301 tgcctgagta ttctggtcac cttactctta acatgaattt ggcccccgca gttgcccctg
     6361 ctttccctgg tgagcgcatt ctcttcttca gatcagtggt gccatctgct ggtggctatg
     6421 gatcaggtca catagattgt ctcatcccac aggagtgggt tcagcatttc taccaggagg
     6481 ccgctccatc acagtctgcg gtggctctta tcagatatgt caaccctgac actggaagaa
     6541 acatctttga ggcaaaactg catagagaag ggttcatcac tgtggcaaat tctggaaaca
     6601 accccatagt tgtgccccca aatggttact tcaggtttga ggcctgggtc aatcaattct
     6661 acacactcac ccccatggga attggacagg ggcgcagaag ggttcaataa tggcaggagc
     6721 tttcttagct ggattggcag gtgacgccat aacaagtggt gtcgggtccc taatcaatgc
     6781 tggggccaat gcaattaatc aaaaggtaga gtatgatttt aataaacagc tccaattggc
     6841 atccttcaaa catgacaagg agatgttgca gtcacaagta ctggccacta aacagctcca
     6901 gcaggaaatg atgaacataa ggcaaggggt cttgtccgct ggcggctttt cccccacaga
     6961 tgccgcgaga ggtgctgtga acgcgccgat gacaaaaatt ttggattgga atggaacaag
     7021 gtacttcgcc ccaaatagta tgaagacaac cagttattcg ggccagtttt ccagcaaccc
     7081 tgtacatagg caacccactt taccccgttc tgacccccca aaagtcaagg ttaatagtga
     7141 ttctgctagt gtgtatagtt ctgcatcttt tgctccttca caatcaaccc actcaacggc
     7201 tttgactgcg gggtctagct catctaggac aacatcctct tctgcagctt ccactctatc
     7261 tagaaccagt gactgggtga gaggacaaaa tgagaggctt agcccgttta tggatggtgc
     7321 tctccaaaca acttttgtca caccaccatc gagcaaggct tcatcatatg ggtcggtctc
     7381 aaccgttccc aaagctgttt tggactcctg gactcctatg ttcaataccc ataggcagcc
     7441 tctcttcgct catgtgcgca ggcgagggga gtcacagact aagcccttta cactccctat
     7501 tctgactctt tgagaacttt ccaactccag attccccgc
//