Typing tool

Complete norovirus genomes

KU757046  GII.17
 GII.P17

Length: 7,550 | 3 CDS

ORF1: 5..5107
ORF2: 5088..6704
ORF3: 6704..7483
LOCUS       KU757046                7550 bp    RNA     linear   VRL 28-SEP-2016
DEFINITION  Norovirus Hu/GII/CN/2013/GII.17/13010141, complete genome.
ACCESSION   KU757046
VERSION     KU757046.1
KEYWORDS    .
SOURCE      Norovirus Hu/GII/CN/2013/GII.17/13010141
  ORGANISM  Norovirus Hu/GII/CN/2013/GII.17/13010141
            Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
            Picornavirales; Caliciviridae; Norovirus.
REFERENCE   1  (bases 1 to 7550)
  AUTHORS   Wang,X., Ding,J., Yong,W. and Xie,G.
  TITLE     Genetic characterization of emergent GII.17 norovirus variants from
            2013 to 2015 in Nanjing, China
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 7550)
  AUTHORS   Wang,X., Ding,J., Yong,W. and Xie,G.
  TITLE     Direct Submission
  JOURNAL   Submitted (23-FEB-2016) Department of Microbiology, Nanjing
            Municipal Center for Disease Control and Prevention, Zizhulin No.
            2, Nanjing, Jiangsu 210003, China
FEATURES             Location/Qualifiers
     source          1..7550
                     /organism="Norovirus Hu/GII/CN/2013/GII.17/13010141"
                     /mol_type="genomic RNA"
                     /strain="Hu/GII/CN/2013/GII.17/13010141"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /db_xref="taxon:1903562"
                     /country="China: Nanjing"
     CDS             5..5107
                     /codon_start=1
                     /product="ORF1"
                     /protein_id="AOR82894.1"
                     /translation="MASNDASAAVAGKNNNNDKEKSSSDSLFSNMTVTFKKALGARPK
                     QPPPGETKQIQKPPRPPTPELVKRMPPPPPNGEDEPKIVYKVGEGVSGLPNLTTVAQP
                     DAQNTAYSVPPLSQREVGEAKEPLPGSILEMWDGEIYHYGLYVERGHVLGVHKPPAAI
                     SLAKIELTPLSLYWRVVYTPQYLIAPETLKNLSGETFPYTAFDNNCYAFCCWVLDLND
                     SWLSRRMIQRTTGFFRPYQDWNRKPLPTMDEPKIKKAANAVLCALSSLFTRPIKDIIG
                     KLRPLNILNVLATCDWTFAGIVESMILLAELFGVFWTPPDVSAMIAPLLGDYEMQGPE
                     DLAVELVPVVMGGIGLVLGFTKEKIGKMLSSAATTLRACKDLGSYGLEILKLVMKWFF
                     PKKEEANELAMVRAIEDAVLDLEAIENNHMTTLLKDKDSLATYMRTLDLEEEKARKLS
                     TKSASPDIVGTINSLLARIAAARSLVHKAKEELSSRQRPVVVMISGRPGIGKTHLARE
                     LAKKVASTLSGDQRIGLIPRNGVDHWDAYKGERVVLWDDYGMSNPIQDALRLQELADT
                     CPLTLNCDRIENKGKVFDSDAIIITTNLANPAPLDYVNFEACSRRIDFLVYADAPDIE
                     KAKRDFPGQPDMWKDHYRPDFTHIKLQLAPQGGFDKNGNTPHGKGVVKSLTIGSLIAR
                     ASGLLHERMDEFELQGSDLPTFNFDRNKVAAFRQLAAENKYGLMDTLRVGNQLKSVKT
                     LDELKQAIKNISIKKCQIVYNGCTYTMESDGRSKVVVEKVQNATVQTNNELVGALHHL
                     RSARIRYYVKCFQEAIYSLLQIAGAAFVTSRIVRRMNISNLWSKPPIEEGDEPEDKGG
                     CPKPRDEDDLTIDSRDIKVEGKKGKNKSGRGKKHTAFSSKGLSDEEYDEYKRIREERN
                     GKYSIEEYLQDRDRYYEELAIAKATEEDFCEEEEIKIRQRIFRPTRKQRKEERATLGL
                     VTGSEIRKRNPDDFKPKGKLWADDNRSVDYNERIDFEAPPSVWSRIVNFGTGWGFWVS
                     PSLFITSTHVIPKGITEAFGVPINQIQIHKSGEFCRLRFPKPIRPDVSGMILEEGAPE
                     GTVVSILIKRTTGELMPLAVRMGTHATMKIQGRTVGGQMGMLLTGSNAKSMDLGTTPG
                     DCGCPYIYKRGNDFVAIGVHTAAARGGNTVICATQGSEGEATLEGGDNKGTYCGAPIL
                     GPGNAPKLSTKTKFWRSSNAPLPPGTYEPAYLGGRDPRVKGGPSLQQVMRDQLKPFTE
                     PRGKPPNPNVLESAKKTIINVLEQTIDPPQKWSYAQACASLDKTTSSGYPHHVRKNDY
                     WSGESFTGKLADQASKANLMYEEGKHMQPVYTAALKDELVKTDKIYGKIKKRLLWGSD
                     LSTMIRCARAFGGLMDELKANCITLPIRVGMNMNEDGPIIFEKHSRYRYHYDADYSRW
                     DSTQQRAVLEAALEIMVRFSAEPQLAQIVAEDLLSPSVVDVGDFKIAINEGLPSGVPC
                     TSQWNSIAHWLLTLCALSEVTGLGPDIIQANSMYSFYGDDEIVSTDIKLDPEKLTAKL
                     KEYGLKPTRPDKTEGPLVISEDLNGLTFLRRTVTRDPAGWFGKLDQNSILRQLYWTRG
                     PNHEDPSETMIPHAQRPVQLMALLGESSLHGPSFYSKVSKLVISELKEGGMDFYVPRQ
                     ESMFRWMRFSDLSTWEGDRNLAPSFVNEDGVE"
     CDS             5088..6704
                     /codon_start=1
                     /product="ORF2"
                     /protein_id="AOR82895.1"
                     /translation="MKMASNDAAPSNDGAAGLVPEGNNETLPLEPVAGAAIAAPVTGQ
                     NNIIDPWIRTNFVQAPNGEFTVSPRNSPGEILLNLELGPDLNPYLAHLSRMYNGYAGG
                     VEVQVLLAGNAFTAGKILFAAVPPNFPVEFLSPAQITMLPHLIVDVRTLEPIMIPLPD
                     VRNTFFHYNNQPNSRMRLVAMLYTPLRSNGSGDDVFTVSCRVLTRPTPDFEFTYLVPP
                     SVESKTKPFSLPILTLSELTNSRFPVPIDSLFTAQNNVLQVQCQNGRCTLDGELQGTT
                     QLLPSGICAFRGRVTAETDHRDKWHMQLQNLNGTTYDPTDDVPAPLGTPDFKGVVFGV
                     ASQRNVGNDAPGSTRAHEAVISTYSPQFVPKLGSVNFRSNDNDFQLQPTKFTPVGIND
                     DGDHPFRQWELPDYSGLLTLNMNLAPPVAPNFPGEQLLFFRSFVPCSGGYNQGIVDCL
                     IPQEWIQHFYQESAPSQSDVALIRYVNPDTGRTLFEAKLHRSGYITVAHSGDYPLVVP
                     ANGYFRFDSWVNQFYSLAPMGTGNGRRRAQ"
     CDS             6704..7483
                     /codon_start=1
                     /product="ORF3"
                     /protein_id="AOR82896.1"
                     /translation="MAGAFIAGLAGDMLTSSVGSLVNAGANAINQKIDFENNKQLQSA
                     SFQHDKEMLQAQVKATKQLQSEMIALKQGVLAAGGFSPTDAARGAIGAPMTKVLDWSG
                     TRYWAPNSTKTTGYSGQFTSSPVHMPSPNAPQSKPAKPRSLAPSSSSSSVYSMSTQST
                     HLTSGSSSNASSASTKLTNLSSGSSQNRTAEWVNQQRSLSPFMSGALNISHVTPPSSR
                     ASSSGTVSTVPKEVLDSWTSAFNTHRQPLFAHLRVRGESRV"
ORIGIN      
        1 gaagatggcg tctaacgacg cttccgctgc cgttgctggc aaaaacaaca acaacgacaa
       61 ggagaaatct tcaagtgaca gcttgttttc taacatgact gttactttta agaaagccct
      121 cggggcgcgg cctaaacaac cgcccccggg agaaacaaaa caaatacaaa aaccaccaag
      181 gccaccgaca ccggaattgg tgaagagaat gcccccaccc ccacccaatg gcgaggatga
      241 accaaagata gtgtataagg tgggagaggg tgtgtctggg ctgcccaacc taacaactgt
      301 ggcacagcct gacgcacaaa acacagctta tagtgttccc ccacttagcc agagagaagt
      361 cggcgaagct aaagaaccgc tgcctggctc cattctggaa atgtgggatg gtgagatcta
      421 ccactatggg ctgtatgttg agcgggggca tgtactcgga gtacacaaac cacctgctgc
      481 aataagcctt gccaaaattg aattaacacc gctgtctctc tactggagag tggtctacac
      541 tccccagtat ttgatagctc cagaaactct taagaacttg agtggagaga ctttcccata
      601 cacggccttt gacaacaact gttatgcctt ctgttgttgg gtcctagacc tcaacgactc
      661 ctggcttagc aggagaatga tccaaagaac aactggattc ttcagaccgt atcaggattg
      721 gaacagaaaa cccttaccaa ccatggatga accgaaaatc aagaaggccg cgaatgctgt
      781 tctgtgcgct ctctcctcac tcttcactag acccattaag gacatcattg gaaagcttag
      841 accactgaac attcttaatg tactggcaac ttgtgactgg acttttgcag gcatagtgga
      901 atccatgatc cttcttgctg aactctttgg ggtgttctgg acccccccag atgtgtctgc
      961 gatgattgct cccttactcg gtgactacga gatgcaaggc cccgaagacc tggccgtgga
     1021 acttgtgccc gtggtaatgg gaggaatagg tttggtgtta ggattcacca aggaaaagat
     1081 cggcaagatg ctttcatcag ctgcgaccac acttagggcc tgcaaggatc taggatctta
     1141 tggattggag atactcaaat tggtcatgaa gtggttcttc cccaagaagg aggaggctaa
     1201 cgaactagcc atggtgaggg ccattgagga tgcagtcctg gatttggagg caatagaaaa
     1261 caaccacatg accacccttc tcaaggataa agacagcctg gccacataca tgaggactct
     1321 tgacttggaa gaagagaaag caaggaaact gtcaaccaaa tcggcgtcac ctgacatcgt
     1381 gggtacaata aactcattat tggcaaggat agcagccgcc aggtcactgg tccacaaggc
     1441 taaggaggag ctctcgagca gacagagacc tgttgttgta atgatatcag gtagaccagg
     1501 tataggaaag acccatctag ccagagagct agccaagaaa gttgcgtcaa cgctgtcagg
     1561 cgaccaaagg attggactga tacctagaaa tggcgtcgac cattgggacg cctacaaggg
     1621 agaaagggtg gttctgtggg atgattatgg tatgagcaac cctatacagg acgcactgag
     1681 gctccaagaa ttggctgaca cctgtcctct gaccctgaat tgtgacagga ttgaaaacaa
     1741 aggaaaagtg ttcgacagtg atgccataat tataacaacc aaccttgcaa acccagcacc
     1801 actagactat gtcaactttg aggcctgctc tagacgcata gacttcttgg tgtatgcaga
     1861 cgcacctgac atcgagaagg ctaagcgtga tttccctggc caaccagata tgtggaaaga
     1921 ccattacaga ccagacttca cacacattaa acttcagctg gcaccacagg gaggttttga
     1981 caaaaatggc aacaccccac atggcaaagg tgtggtgaag tctctgacga ttggttctct
     2041 gatcgccagg gcttctggct tgctccacga gagaatggat gaattcgagc tccagggctc
     2101 tgacctgcca accttcaatt ttgaccgcaa caaagtcgcc gccttcagac aattagcagc
     2161 tgaaaacaaa tatggtctta tggacacact gagggtcggc aaccaactga aaagtgtcaa
     2221 gaccctggat gagctgaaac aggccataaa gaacatcagt atcaagaagt gccagatagt
     2281 gtataatgga tgcacctata ccatggaatc tgatgggagg agcaaggttg tggttgaaaa
     2341 ggtacaaaac gcaacagttc aaaccaacaa tgaacttgta ggggcactcc accacctgag
     2401 atctgcaagg ataagatact atgttaaatg tttccaagaa gccatttact ctctactcca
     2461 aattgctggt gcagccttcg tcacctcacg catcgtgagg cgcatgaaca tctcaaacct
     2521 ctggtcgaag ccacccatcg aggagggtga tgagcctgaa gacaaaggag gatgccccaa
     2581 gcccagggat gaagatgacc tcactattga ctctagagac attaaagtgg aagggaagaa
     2641 gggcaagaac aagtctggtc ggggcaagaa acacacagcc ttctcatcca agggcctcag
     2701 tgatgaagag tacgatgagt acaagagaat cagagaggag aggaatggca aatactcaat
     2761 agaggaatac ctccaagata gggacagata ctatgaagag cttgccattg ctaaggccac
     2821 tgaggaggac ttctgtgaag aggaggagat caaaatccgc cagagaatct tccgacccac
     2881 caggaagcag cggaaagagg aaagggccac gcttgggctt gtcacaggat cggaaatcag
     2941 aaagaggaat ccagatgact ttaaaccaaa aggaaaattg tgggctgatg acaacaggag
     3001 cgtggattac aatgagagga tagattttga ggctcccccg agtgtttggt ctaggatagt
     3061 caactttggc acaggctggg gattctgggt ttctccaagt ctctttataa cttcaacaca
     3121 cgtcatacca aaaggaatca ctgaggcctt tggagtgccc ataaaccaaa tccaaattca
     3181 caaatctgga gaattttgcc gcttgcggtt tccaaagcca atcagaccag acgtgagtgg
     3241 aatgatcttg gaagagggtg cccctgaggg cactgttgtg tctattctca tcaaaaggac
     3301 aacaggggag ctgatgcctc ttgcagtcag aatggggact catgccacaa tgaaaatcca
     3361 aggtagaacg gtgggtggtc agatgggtat gcttctcact ggctcaaatg ctaaaagcat
     3421 ggatctaggc acaacgccag gtgactgcgg gtgtccatac atatacaaaa ggggcaatga
     3481 cttcgtggcc attggggtgc acactgcagc agcacgtgga ggcaacacgg tcatatgtgc
     3541 cacacaggga agtgaaggtg aagccactct tgaaggaggt gacaacaagg gtacctattg
     3601 tggagccccc attttgggac ctggcaatgc accaaaattg agcacaaaaa caaaattctg
     3661 gagatcctct aacgcaccgc ttcccccagg tacttatgaa ccagcatacc ttggtgggag
     3721 agacccgcgc gtgaagggag gcccatctct gcaacaagtt atgagagacc aacttaaacc
     3781 ttttacagag cccagaggga agccaccaaa cccaaatgtc ctagagtcag caaagaagac
     3841 tatcatcaat gttctggaac aaaccattga cccccctcaa aagtggtcat atgcccaagc
     3901 ttgtgcatcc ctcgacaaga caacctccag tggatacccg caccacgtcc ggaagaatga
     3961 ctattggagt ggtgaatcct tcacagggaa acttgcagac caggcttcaa aagcaaatct
     4021 catgtatgag gaaggcaagc acatgcaacc agtttacacc gcagcactca aagacgagct
     4081 cgtgaaaact gacaaaattt atggcaagat caagaaaaga ctcctgtggg gttctgacct
     4141 ctccaccatg attcgatgcg ccagagcatt tggtggtctc atggatgagc tcaaagcaaa
     4201 ttgtattaca ctccctatca gagttggtat gaatatgaat gaagacggtc ccataatatt
     4261 tgagaaacac tccaggtaca ggtaccacta tgatgctgat tactcccgct gggactccac
     4321 acaacagcgg gcagtgctgg aagcggcact tgaaatcatg gtgagatttt ctgctgagcc
     4381 acagctggca caaatagtgg cagaggacct gctgtcacca agtgtggttg atgtgggcga
     4441 tttcaaaatc gctatcaatg aaggcctacc atctggcgtg ccttgcacct cacaatggaa
     4501 ttctattgcc cactggttac tcaccctgtg tgccctttct gaagtgacag gactaggtcc
     4561 tgacatcata caagccaact ccatgtactc tttctatggt gatgatgaga ttgtgagcac
     4621 agacataaaa ttggacccag agaaattgac cgcaaaactc aaagaatatg gccttaaacc
     4681 cactcggccc gacaaaactg aggggccgct ggtgattagt gaagacctga atgggttgac
     4741 tttcctccgc cgaacagtca cccgtgatcc agcaggttgg tttggaaagt tggaccaaaa
     4801 ctccatcctc aggcagttgt actggacaag aggacccaac catgaagacc ccagtgagac
     4861 catgatacca cacgcacaga gacctgtgca gctcatggca ctactaggag aatcctccct
     4921 acatggaccc tcattttaca gcaaggttag caaactggtc atatctgaac ttaaagaggg
     4981 aggaatggat ttttatgtgc ccagacaaga gtcaatgttc agatggatga ggttctcaga
     5041 tctaagcaca tgggagggcg atcgcaatct ggctcccagt tttgtgaatg aagatggcgt
     5101 cgaatgacgc cgctccatct aatgatggtg ctgctggtct cgtaccagag ggcaacaacg
     5161 agacccttcc cctagaacca gttgcgggcg cagctatagc cgcacccgtc actggccaaa
     5221 acaacataat tgacccctgg attagaacaa attttgtgca agcaccaaat ggagagttca
     5281 cagtgtcacc cagaaactcc cctggagaaa ttttactaaa cctagagttg ggccctgatt
     5341 tgaaccctta tttggctcat ttgtcaagga tgtacaatgg gtatgctggt ggagtggaag
     5401 ttcaggttct cctggcaggg aacgcgttca ctgccggaaa gatcctcttc gccgccgtcc
     5461 cgccaaattt cccagtggaa ttcttaagcc cagcccagat tacaatgctc ccacatttaa
     5521 tagtagatgt caggactctt gaaccaatta tgatcccact ccctgatgtt aggaatacat
     5581 tcttccatta taacaaccag cctaacagcc gcatgagatt agtggctatg ctctacaccc
     5641 cccttagatc taatggctca ggtgatgatg tctttactgt ctcttgcagg gttttgacta
     5701 ggcctactcc tgattttgag ttcacttatt tagtgccacc ttctgttgaa tctaagacta
     5761 agcctttttc cttacctatt ttaacccttt ctgagctcac aaattcgagg ttcccagtcc
     5821 ccatcgattc gcttttcacc gcccagaata atgtgttgca ggtgcagtgt caaaatggca
     5881 ggtgcacact tgatggtgag ttacaaggta caacccagtt gctcccatct ggcatctgtg
     5941 cattcagagg acgggtgaca gcagaaactg accatcgtga caagtggcac atgcaactgc
     6001 aaaacctcaa tggcacaaca tatgacccaa ctgatgatgt gccagccccg ctgggtacac
     6061 ctgacttcaa gggcgtcgtg tttggggtag caagccaaag aaatgtgggt aatgatgcgc
     6121 ctggctcaac cagggcccat gaggcggtga tttcaaccta tagcccccaa tttgtcccca
     6181 aattaggttc tgtcaatttt agaagtaatg ataatgattt ccaattgcag ccgacaaaat
     6241 tcacaccagt gggcatcaat gacgatggtg accacccgtt cagacagtgg gaactaccag
     6301 actattcagg gctgcttacc ttgaatatga accttgcccc cccggttgct ccaaatttcc
     6361 ctggtgaaca attattattc ttcagatctt ttgtgccatg ctcaggaggt tacaaccaag
     6421 gcattgtaga ttgtcttatt ccccaagaat ggatccaaca cttctatcag gaatcagcgc
     6481 cctcccagtc agacgtggcc ctaatcaggt atgttaaccc cgatacggga cgtacactgt
     6541 ttgaagcaaa attgcacaga tctggttaca ttactgtggc tcactctgga gactatcctc
     6601 ttgttgttcc ggctaatgga tactttagat ttgattcttg ggtaaatcag ttttactcac
     6661 tcgccccaat gggaactggg aatgggcgaa ggagggctca gtaatggctg gagctttcat
     6721 tgcaggattg gcaggcgaca tgctcacgtc atctgtgggc tccctggtga acgcaggggc
     6781 aaacgccatc aaccaaaaga tagactttga aaacaacaaa caactccagt ctgcttcctt
     6841 tcagcatgat aaagagatgc tccaagcgca ggtgaaggca accaagcagc tgcaatctga
     6901 aatgatagcc ctaaaacagg gggttttggc cgcaggcggc ttttccccca ctgatgcagc
     6961 aaggggagcc attggtgcac ccatgacaaa ggtgcttgac tggtctggca ctcgatactg
     7021 ggcacccaat tccacaaaga caactggtta ttcgggacaa ttcacctctt cacctgtgca
     7081 catgcctagc ccaaatgctc cacaatcaaa acctgcaaag cctaggtctc tagctccttc
     7141 ttcttcttct agtagtgtct atagtatgtc tactcaatca actcatttaa catctggctc
     7201 ttctagtaat gcttcttctg cctctacaaa attgacaaac ttaagctctg gctcctctca
     7261 aaacagaaca gcagagtggg tgaaccaaca gagaagtctt agccctttca tgagtggcgc
     7321 actcaatatc tcacatgtca cgccaccctc aagtagggct tccagttctg ggacggtctc
     7381 gaccgtgccc aaggaagttt tggactcctg gacgtctgcg tttaacacac acagacagcc
     7441 gctcttcgca cacctcagag tgagggggga gtcacgtgtt tagtgaaaag aaataattgg
     7501 ctataatgtg atttcttttt aaaatttggc taatttgtat cttttaaaaa
//