Typing tool

Complete norovirus genomes

KU557788  GII.17
 GII.P17

Length: 7,497 | 3 CDS

ORF1: 5..5107
ORF2: 5094..6704
ORF3: 6704..7483
LOCUS       KU557788                7497 bp    RNA     linear   VRL 03-AUG-2016
DEFINITION  Norovirus Hu/GII.17/2238/GD-JM/2013-08-30 ORF1, VP1, and VP2 genes,
            complete cds.
ACCESSION   KU557788
VERSION     KU557788.1
KEYWORDS    .
SOURCE      Norovirus Hu/GII.17/2238/GD-JM/2013-08-30
  ORGANISM  Norovirus Hu/GII.17/2238/GD-JM/2013-08-30
            Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
            Picornavirales; Caliciviridae; Norovirus.
REFERENCE   1  (bases 1 to 7497)
  AUTHORS   Lu,J. and Li,H.
  TITLE     Direct Submission
  JOURNAL   Submitted (19-JAN-2016) Guangdong Provincial Center for Disease
            Control and Prevention, 160 Qunxian Road, Dashi, Panyu District,
            Guangzhou, Guangdong 514300, China
COMMENT     ##Assembly-Data-START##
            Assembly Method       :: Seqman v. 7.1
            Sequencing Technology :: Sanger dideoxy sequencing
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..7497
                     /organism="Norovirus Hu/GII.17/2238/GD-JM/2013-08-30"
                     /mol_type="genomic RNA"
                     /isolate="Hu/GII.17/2238/GD-JM/2013-08-30"
                     /host="Homo sapiens"
                     /db_xref="taxon:1882993"
                     /country="China"
                     /collection_date="30-Aug-2013"
                     /note="genotype: GII.17"
     CDS             5..5107
                     /codon_start=1
                     /product="ORF1"
                     /protein_id="ANW82601.1"
                     /translation="MASNDASAAVAGKNNNNDKEKSSSDSLFANMSVTFKKALGARSK
                     QPPPGETKQIQKPPRPPTPELVKRIPPPPPNGEDEPGIVYKVGEGVSGLPDLTTVVQP
                     DAQNTAYSVPPLSQREVGEAKEPLPGSILEMWDGEIYHYGLYVERGHVLGVHKPPAAI
                     SLAKIEITPLSLYWRVVYTPQYLIDPGTLKNLSGETFPYTAFDNNCDAFCCWVLDLND
                     SWLSRRMIQRTTGFFRPYQDWNRKPLPTMDEPKIKKAANAVLCALSSLFTRPIKDIIG
                     KLRPLNILNVLATCDWTFAGIVESMILLAELFGVFWTPPDVSAMIAPLLGDYEMQGPE
                     DLAVELVPVVMGGIGLVLGFTKEKIGKMLSSAATTLRACKDLGSYGLEILKLVMKWFF
                     PKKEEANELAMVRAIEDAVLDLEAIENNHMTTLLKDKDSLATYMRTLDLEEEKARKLS
                     TKSASPDIVGTINSLLARIAAARSLVHKAKEELSSRQRPVVVMISGRPGIGKTHLARE
                     LAKKVASTLSGDQRIGLIPRNGVDHWDAYKGERVVLWDDYGMSNPIQDALRLQELADT
                     CPLTLNCDRIENKGKVFDSDAIIITTNLANPAPLDYVNFEACSRRIDFLVYADAPDIE
                     KAKRDFPGQPDMWKDHYRPDFTHIKLQLAPQGGFDKNGNTPHGKGVVKSLTIGSLIAR
                     ASGLLHERMDEFELQGSDLPTFNFDRNKVAAFRQLAAENKYGLMDTLRVGNQLKSVKT
                     LDELKQAIKNISIKKCQIVYNGCTYTMESDGRSKVVVEKVQNATVQTNNELVGALHHL
                     RSARVRYYVKCFQEAIYSLLQIAGAAFVTSRIVRRMNISNLWSKPPIEEGDEPEDKGG
                     CPKPRDEDDLTIDSRDIKVEGKKGKNKSGRGKKHTAFSSKGLSDEEYDEYKRIREERN
                     GKYSIEEYLQDRDRYYEELAIAKATEEDFCEEEEIKIRQRIFRPTRKQRKEERATLGL
                     VTGSEIRKRNPDDFKPKGKLWADDNRSVDYNERIDFEAPPSVWSRIVNFGTGWGFWVS
                     PSLFITSTHVIPKGITEAFGVPINQIQIHKSGEFCRLRFPKPIRPDVSGMILEEGAPE
                     GTVVSILIKRTTGELMPLAVRMGTHATMKIQGRTVGGQMGMLLTGSNAKSMDLGTTPG
                     DCGCPYIYKRGNDFVAIGVHTAAARGGNTVICATQGSEGEATLEGGDNKGTYCGAPIL
                     GPGNAPKLSTKTKFWRSSNAPLPPGTYEPAYLGGRDPRVKGGPSLQQVMRDQLKPFTE
                     PRGKPPNPNVLESAKKTIINVLEQTIDPPQKWSYAQACASLDKTTSSGYPHHVRKNDY
                     WSGESFTGKLADQASKANLMYEEGKHMQPVYTAALKDELVKTDKIYGKIKKRLLWGSD
                     LSTMIRCARAFGGLMDELKANCITLPIRVGMNMNEDGPIIFEKHSRYRYHYDADYSRW
                     DSTQQRAVLEAALEIMVRFSAEPQLAQIVAGDLLSPSVVDVGDFKIAINEGLPSGVPC
                     TSQWNSIAHWLLTLCALSEVTGLGPDIIQANSMYSFYGDDEIVSTDIKLDPEKLTAKL
                     KEYGLKPTRPDKTEGPLVISEDLNGLTFLRRTVTRDPAGWFGRLDQNSILRQLYWTRG
                     PNHEDPSETMIPHAQRPVQLMALLGESSLHGPSFYSKVSKLVISELKEGGMDFYVPRQ
                     ESMFRWMRFSDLSTWEGDRNLAPSFVNEDGVE"
     CDS             5094..6704
                     /codon_start=1
                     /product="VP1"
                     /protein_id="ANW82602.1"
                     /translation="MASNDAAPSSDGAAGLVPEGNNETLPLEPVAGAAIAAPVTGQNN
                     IIDPWIRTNFVQAPNGEFTVSPRNSPGEILLNLELGPDLNPYLAHLSRMYNGYAGGVE
                     VQVLLAGNAFTAGKILFAAVPPNFPVEFLSPAQITMLPHLIVDVRTLEPIMIPLPDVR
                     NTFFHYNNQPNSRMRLVAMLYTPLRSNGSGDDVFTVSCRVLTRPTPDFEFTYLVPPSV
                     ESKTKPFSLPILTLSELTNSRFPVPIDSLFTAQNNVLQVQCQNGRCTLDGELQGTTQL
                     LPSGICAFRGRVTAETDHRDKWHMQLQNLNGTTYDPTDDVPAPLGTPDFKGVVFGVAS
                     QRNVGNDAPGSTRAHEAVISTYSPQFVPKLGSVNFRSNDNDFQLQPTKFTPVGINDDG
                     DHPFRQWELPDYSGLLTLNMNLAPPVAPNFPGEQLLFFRSFVPCSGGYNQGIVDCLIP
                     QEWIQHFYQESAPSQSDVALIRYVNPDTGRTLFEAKLHRSGYITVAHSGDYPLVVPAN
                     GYFRFDSWVNQFYSLAPMGTGNGRRRAQ"
     CDS             6704..7483
                     /codon_start=1
                     /product="VP2"
                     /protein_id="ANW82603.1"
                     /translation="MAGAFIAGLAGDMLTSSVGSLVNAGANAINQKIDFENNKQLQSA
                     SFQHDKEMLQAQVKATKQLQSEMIALKQGVLAAGGFSPTDAARGAIGAPMTKVLDWSG
                     TRYWAPNSTKTTGYSGQFTSSPVHMPSPNAPQSKPAKPRSLAPSSSSSSVYSMSTQST
                     HLTSGSSSNASSASTKLTNLSSGSSQNRTAEWVNQQRSLSPFMSGALNISHVTPPSSR
                     ASSSGTVSTVPKEVLDSWTSAFNTHRQPLFAHLRVRGESRV"
ORIGIN      
        1 gaagatggcg tctaacgacg cttccgctgc cgttgctggc aaaaacaaca acaacgacaa
       61 ggaaaaatct tcaagcgaca gcttgtttgc taacatgtct gtcactttta agaaagccct
      121 cggggcgcgg tctaaacaac cgcccccggg agaaacaaaa caaatacaaa aaccaccaag
      181 gccaccgaca ccggaattgg tgaagagaat acctccaccc ccacccaatg gcgaggatga
      241 accagggata gtgtacaagg tgggagaggg tgtgtctggg ctgcccgacc taacaactgt
      301 ggtacaacct gacgcacaaa acacagctta tagtgttccc ccacttagcc agagagaagt
      361 cggcgaagct aaagaaccgc tgcctggctc cattcttgaa atgtgggatg gtgagatcta
      421 ccactatggg ctgtatgttg agcgggggca tgtgctcgga gtacacaaac cacctgctgc
      481 aataagcctt gccaaaattg aaataacacc gctgtctctc tactggagag tggtctacac
      541 tccccagtat ttgatagatc caggaactct taagaacttg agtggagaga ctttcccata
      601 cacggccttt gacaacaact gtgatgcctt ctgttgttgg gtcctagacc tcaacgactc
      661 ctggcttagc aggagaatga tccaaagaac aactggattc ttcagaccgt atcaggattg
      721 gaacagaaaa cccttaccaa ccatggatga accgaaaatc aagaaggccg cgaatgctgt
      781 tctgtgcgct ctctcctcac tcttcactag acccattaag gacatcattg gaaagcttag
      841 accactgaac attcttaatg tactggcaac ttgtgactgg acttttgcag gcatagtgga
      901 atccatgatc cttcttgctg aactctttgg ggtgttctgg acccccccag atgtgtctgc
      961 gatgattgct cccttactcg gtgactacga gatgcaaggc cccgaagacc tggccgtgga
     1021 acttgtgccc gtggtaatgg gagggatagg tttggtgtta ggattcacca aggaaaagat
     1081 cggcaagatg ctttcatcag ctgcgaccac acttagggcc tgcaaggacc taggatctta
     1141 tggattggag atactcaaat tggtcatgaa gtggttcttc cccaagaagg aggaggctaa
     1201 cgaactagcc atggtgaggg ccattgagga tgcagtcctg gatttggagg caatagagaa
     1261 caaccacatg accacccttc tcaaggataa agacagcctg gccacataca tgaggactct
     1321 tgacttggaa gaagagaaag caaggaaact gtcaaccaaa tcggcgtcac ctgacatcgt
     1381 gggtacaata aactcattat tggcaaggat agcagccgcc aggtcactgg tccacaaggc
     1441 taaggaggag ctctcgagca gacagagacc tgttgttgta atgatatcag gtagaccagg
     1501 tataggaaag acccatctag ccagagagct agccaagaaa gttgcgtcaa cactgtcagg
     1561 cgaccaaagg attggactga tacctagaaa tggcgtcgac cattgggacg cctacaaggg
     1621 agaaagggtg gttctgtggg atgattatgg tatgagcaac cctatacagg acgcactgag
     1681 gctccaagaa ttggctgaca cctgtcctct gaccctgaat tgtgacagga ttgaaaacaa
     1741 aggaaaagtg ttcgacagtg atgccataat tataacaacc aaccttgcaa acccagcacc
     1801 actagactat gtcaactttg aggcctgctc tagacgcata gacttcttgg tgtatgcaga
     1861 cgcacctgac atcgagaagg ctaagcgtga tttccctggc caaccagata tgtggaaaga
     1921 ccattacaga ccagacttca cacacattaa acttcagctg gcaccgcagg gaggttttga
     1981 caaaaatggc aacaccccac atggcaaagg tgtggtgaag tctctgacga ttggttctct
     2041 gatcgccagg gcttctggct tgctccacga gagaatggat gaattcgagc tccagggctc
     2101 tgacctgcca accttcaatt ttgaccgcaa caaagtcgcc gccttcagac aattagcagc
     2161 tgaaaacaaa tatggtctta tggacacact gagggtcggc aaccaactga aaagtgtcaa
     2221 gaccctggat gagctgaaac aggccataaa gaacatcagt atcaagaagt gccagatagt
     2281 gtataatgga tgcacctata ccatggaatc tgatgggagg agcaaggttg tggttgaaaa
     2341 ggtacaaaac gcaacagttc aaaccaacaa tgaacttgta ggggcactcc accacctgag
     2401 atctgcaagg gtaagatact atgttaaatg tttccaagaa gccatttact ctctacttca
     2461 aattgctggt gcagccttcg tcacctcacg catcgtgagg cgcatgaaca tctcaaacct
     2521 ctggtcgaag ccacccatcg aggagggtga tgagcctgaa gacaaaggag gatgccccaa
     2581 gcccagggat gaagatgacc tcactattga ctctagagac attaaagtgg aagggaagaa
     2641 gggcaagaac aagtctggtc ggggcaagaa acacacagcc ttctcatcca agggcctcag
     2701 tgatgaagag tacgatgagt acaagagaat cagagaggag agaaatggca aatactcaat
     2761 agaggaatac ctccaagata gggacagata ctatgaagag cttgccattg ctaaggccac
     2821 tgaggaggac ttctgtgaag aggaggagat caaaatccgc cagagaatct tccgacccac
     2881 caggaagcag cggaaagagg aaagggccac gcttgggctt gtcacaggat cggaaatcag
     2941 aaagaggaat ccagatgact ttaaaccaaa aggaaaattg tgggctgatg acaacaggag
     3001 cgtggattac aatgagagga tagattttga ggctcccccg agtgtttggt ctaggatagt
     3061 caactttggc acaggctggg gattttgggt ttctccaagt ctctttataa cttcaacaca
     3121 cgtcatacca aaaggaatca ctgaggcctt tggagtgccc ataaaccaaa tccaaattca
     3181 caaatctgga gaattttgcc gcttgcggtt tccaaagccg atcagaccag acgtgagtgg
     3241 gatgatcttg gaagagggtg cccctgaagg cactgttgtg tctattctca tcaaaaggac
     3301 aacaggggag ctgatgcctc ttgcagtcag aatggggact catgccacaa tgaaaatcca
     3361 gggtagaacg gtgggtggtc agatgggtat gcttctcact ggctcaaatg ctaaaagcat
     3421 ggatctaggc acaacgccag gtgactgcgg gtgtccatac atatacaaaa ggggcaatga
     3481 cttcgtggcc attggggtgc acactgcagc agcacgtgga ggcaacacgg tcatatgtgc
     3541 cacacaggga agtgaaggtg aagccactct tgaaggaggt gacaacaagg gtacctattg
     3601 tggagccccc attttgggac ctggcaatgc accaaaattg agcacaaaaa caaaattctg
     3661 gagatcctct aacgcaccgc ttcccccagg tacttatgaa ccagcatacc ttggtgggag
     3721 agatccgcgc gtgaagggag gcccatctct gcaacaagtt atgagagacc aacttaaacc
     3781 tttcacagag cccagaggga agccaccaaa cccaaatgtc ctagagtcag caaagaagac
     3841 tatcatcaat gttctggaac aaaccattga cccccctcaa aagtggtcat atgcccaagc
     3901 ttgtgcatcc ctcgacaaga caacctccag tggatacccg caccacgtcc ggaagaatga
     3961 ctattggagt ggtgaatcct tcacagggaa acttgcagac caggcttcaa aagcaaatct
     4021 catgtatgag gaaggcaagc acatgcaacc agtttacacc gcagcactca aagacgagct
     4081 cgtgaaaact gacaaaattt atggcaagat caagaaaaga ctcctgtggg gttctgacct
     4141 ctccaccatg attcgatgcg ccagagcatt tggtggtctc atggatgagc tcaaagcaaa
     4201 ttgtattaca ctccctatca gagttggtat gaatatgaat gaagacggtc ccataatatt
     4261 tgagaaacac tccaggtaca ggtaccacta tgatgctgat tactcccgct gggactccac
     4321 acaacagcgg gcagtgctgg aagcggcact tgaaatcatg gtgagatttt ctgctgagcc
     4381 acagctggca caaatagtgg caggggacct gctgtcacca agtgtggttg atgtgggcga
     4441 tttcaaaatc gctatcaatg aaggcctacc atctggcgtg ccttgcacct cacaatggaa
     4501 ttctattgcc cactggttac tcaccctgtg tgccctttct gaagtgacag gactaggtcc
     4561 tgacatcata caagccaact ccatgtactc tttctatggt gatgatgaga ttgtgagcac
     4621 agacataaaa ttggacccag agaaattgac cgcaaaactc aaagaatatg gccttaaacc
     4681 cactcggccc gacaaaactg aggggccgct ggtgattagt gaagacctga atgggttgac
     4741 tttcctccgc cgaacagtca cccgtgatcc agcaggttgg tttggaaggt tggaccaaaa
     4801 ctccatcctc aggcagttgt actggacaag aggacccaac catgaagacc ccagtgagac
     4861 catgatacca cacgcacaga gacctgtgca gctcatggca ctactaggag aatcctccct
     4921 acatggaccc tcattttaca gcaaggttag caaactggtc atatctgaac ttaaagaggg
     4981 aggaatggat ttttatgtgc ccagacaaga gtcaatgttc agatggatga ggttctcaga
     5041 tctaagcaca tgggagggcg atcgcaatct ggctcccagt tttgtgaatg aagatggcgt
     5101 cgaatgacgc cgctccatct agtgatggtg ctgctggtct tgtaccagag ggcaacaacg
     5161 agacccttcc cctagaacca gttgcgggcg cagctatagc cgcacccgtc actggccaaa
     5221 acaacataat tgacccctgg attagaacaa attttgtgca agcaccaaat ggagagttca
     5281 cagtgtcacc cagaaactcc cctggagaaa ttttactaaa cctagagttg ggccctgatt
     5341 tgaaccctta tttggctcat ttgtcaagga tgtacaatgg gtatgctggt ggagtggaag
     5401 ttcaggttct cctggcaggg aacgcgttca ctgccggaaa gatcctcttc gccgccgtcc
     5461 cgccaaattt cccagtggaa ttcttaagcc cagcccagat tacaatgctc ccacatttaa
     5521 tagtagatgt caggactctt gaaccaatta tgatcccact ccctgatgtt aggaatacat
     5581 tcttccatta taacaaccag cctaacagcc gcatgagatt agtggctatg ctctacaccc
     5641 cccttagatc taatggctca ggtgatgatg tctttactgt ctcttgcagg gttttgacta
     5701 ggcctactcc tgattttgag ttcacttatt tagtgccacc ttctgttgaa tctaagacta
     5761 agcctttttc cttacctatt ttaacccttt ctgagctcac aaattcgagg ttcccagtcc
     5821 ccatcgattc gcttttcacc gcccagaata atgtgttgca ggtgcagtgt caaaatggca
     5881 ggtgcacact tgatggtgag ttacaaggca caacccagtt gctcccatct ggcatctgtg
     5941 cattcagagg acgggtgaca gcagaaactg accatcgtga caagtggcac atgcaactgc
     6001 aaaacctcaa tggcacaaca tatgacccaa ctgatgatgt gccagccccg ctgggtacac
     6061 ctgacttcaa gggcgtcgtg tttggggtag caagccaaag aaatgtgggt aatgatgcgc
     6121 ctggctcaac cagggcccat gaggcggtga tttcaaccta tagcccccaa tttgttccca
     6181 aattaggttc tgtcaatttt agaagtaatg ataatgattt ccaattgcag ccgacaaaat
     6241 tcacaccagt gggcatcaat gacgatggtg accacccgtt cagacagtgg gaactaccag
     6301 actattcagg gctgcttacc ttgaatatga accttgcccc cccggttgct ccaaatttcc
     6361 ctggtgaaca attattattc ttcagatctt ttgtgccatg ctcaggaggt tataaccaag
     6421 gcattgtaga ctgtcttatt ccccaagaat ggatccaaca cttctatcag gaatcagcgc
     6481 cctcccagtc agacgtggcc ctaatcaggt acgttaaccc cgatacggga cgtacactgt
     6541 ttgaagcaaa attgcacaga tctggttaca ttactgtggc tcactctgga gactatcctc
     6601 ttgttgttcc ggctaatgga tactttagat ttgattcttg ggtaaatcag ttttactcac
     6661 tcgccccaat gggaactggg aatgggcgaa ggagggctca gtaatggctg gagcttttat
     6721 tgcaggattg gcaggcgaca tgctcacatc atctgtgggc tccctggtga acgcaggggc
     6781 aaacgccatc aaccaaaaga tagactttga aaacaacaaa caactccagt ctgcttcctt
     6841 tcagcatgat aaagagatgc tccaagcgca ggtgaaggca accaagcagc tgcaatctga
     6901 aatgatagcc ctaaaacagg gggttttggc cgcaggcggc ttttccccca ctgatgcagc
     6961 aaggggagcc attggtgcac ccatgacaaa ggtgcttgac tggtctggca ctcgatactg
     7021 ggcacccaat tccacaaaga caactggtta ttcgggacaa ttcacctctt cacctgtgca
     7081 catgcctagc ccaaatgctc cacaatcaaa acctgcaaag cctaggtccc tagctccttc
     7141 ttcttcttct agtagtgtct atagtatgtc tactcaatca actcatttaa catctggctc
     7201 ttctagtaat gcttcttctg cctctacaaa attgacaaac ttaagctctg gctcctctca
     7261 aaacagaaca gcagagtggg tgaaccaaca gagaagtctt agccctttca tgagtggtgc
     7321 actcaacatc tcacatgtca cgccaccctc aagtagggct tccagttctg ggacagtctc
     7381 gaccgtgccc aaggaagttt tggactcctg gacgtctgcg tttaacacac acagacagcc
     7441 gctcttcgca cacctcagag tgagggggga gtcacgtgtt tagtgaaaag aaataat
//