Typing tool

Complete norovirus genomes

KT589391  GII.17
 GII.P31

Length: 7,550 | 3 CDS

ORF1: 4..5097
ORF2: 5078..6700
ORF3: 6700..7479
LOCUS       KT589391                7550 bp    RNA     linear   VRL 16-SEP-2015
DEFINITION  Norovirus GII/Hu/HKG/2015/GII.Pe_GII.17/CUHK-NS-682, complete
            genome.
ACCESSION   KT589391
VERSION     KT589391.1
KEYWORDS    .
SOURCE      Norovirus GII/Hu/HKG/2015/GII.Pe_GII.17/CUHK-NS-682
  ORGANISM  Norovirus GII/Hu/HKG/2015/GII.Pe_GII.17/CUHK-NS-682
            Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
            Picornavirales; Caliciviridae; Norovirus.
REFERENCE   1  (bases 1 to 7550)
  AUTHORS   Chan,M.C.W., Hung,T.T.N., Kwok,K. and Chan,P.K.S.
  TITLE     A novel recombinant GII.Pe-GII.17 norovirus
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 7550)
  AUTHORS   Chan,M.C.W., Hung,T.T.N., Kwok,K. and Chan,P.K.S.
  TITLE     Direct Submission
  JOURNAL   Submitted (24-AUG-2015) Department of Microbiology, The Chinese
            University of Hong Kong, CUHK, Shatin 852, Hong Kong
FEATURES             Location/Qualifiers
     source          1..7550
                     /organism="Norovirus
                     GII/Hu/HKG/2015/GII.Pe_GII.17/CUHK-NS-682"
                     /mol_type="genomic RNA"
                     /isolate="GII/Hu/HKG/2015/GII.Pe_GII.17/CUHK-NS-682"
                     /host="Homo sapiens"
                     /db_xref="taxon:1712669"
                     /country="Hong Kong"
                     /collection_date="30-Jun-2015"
     gene            4..5097
                     /gene="ORF1"
     CDS             4..5097
                     /gene="ORF1"
                     /codon_start=1
                     /product="polyprotein"
                     /protein_id="ALD83747.1"
                     /translation="MASNDASAAAAANSNNDTAKSSSDGVLSSMAVTFKRALGARPKQ
                     PPPKEIPPRPPRPPTPELVKKIPPPPPNGEDEPVVSYSAKDGVSGLPELTTVRQPDEI
                     NTAFSVPPLNQRENRDAKEPLTGTIIEMWDGEIYHYGLYVERGLILGVHKPPAAISLA
                     KVELTPLSLFWRPVYTPQYLISPDTLRRLHGESFPYTAFDNNCYAFCCWVLDLNDSWL
                     SRRMIQRTTGFFRPYQDWNRKPLPTMDDSKLKKVANIFLCTLSSLFTRPIKDIIGKLK
                     PLNILNILATCDWTFAGVVESLILLAELFGVYWTPPDVSAMIAPLLGDYELQGPEDLA
                     VELVPVVMGGIGLVLGFTKEKIGKMLSSAASTLRACKDLGAYGLEILKLVMKWFFPKK
                     EEANELAMVRSIEDAVLDLEAIENNHMTTLLKDKDSLATYMRTLDLEEEKARKLSTKS
                     ASPDIVGTINALLARIAAARSLVHRAKEELSSRPRPVVVMISGKPGIGKTHLARELAK
                     KIAASLTGDQRVGLIPRNGVDHWDAYKGERVVLWDDYGMSNPIHDALRLQELADTCPL
                     TLNCDRIENKGKVFDSDAIIITTNLANPAPLDYVNFEACSRRIDFLVYAEAPEVERAK
                     RDFPGQPDMWKNAFSPDFSHIKLSLAPQGGFDKNGNTPHGKGVMKTLTTGSLIARASG
                     LLHERLDEYELQGPALTTFNFDRNKILAFRQLAAENKYGLMDTMRVGKQLKDVKTMPD
                     LKQALKNVAIRKCQIVYGGSTYTLEADGKGSVKIDKVQSAAVQTNNEIAGALHHLRCA
                     RIRYYVKCVQEALYSIIQIAGAAFVTTRIAKRMNIQNLWSKPQVEDIEETASKDGCPK
                     PKEDEEFVVSSDDIKTEGKKGKNKSGRGKKHTAFSSKGLSDEEYDEYKRIREERNGKY
                     SIEEYLQDRDKYYEEVAIARATEEDFCEEEEAKIRQRIFRPTRKQRKEERASLGLVTG
                     SEIRKRNPEDFKPKGKLWADDDRSVDYNEKLNFEAPPSIWSRIVNFGSGWGFWVSPSL
                     FITSTHVIPQGAKEFFGVSIKQIQIHKSGEFCRLRFPKPIRTDVTGMILEEGAPEGTV
                     ATLLIKRPTGELMPLAARMGTHATMKIQGRTVGGQMGMLLTGSNAKSMDLGTTPGDCG
                     CPYIYKRGNDYVVIGVHTAAARGGNTVICATQGSEGEATLEGGENKGTYCGAPILGPG
                     SAPKLSTKTKFWRSSTTPLPPGTYEPAYLGGKDPRVKGGPSLQQVMRDQLKPFTEPRG
                     KPPKPNVLEAAKKTIINVLEQTIDPPQKWSFAQACASLDKTTSSGHPHHMRKNDCWNG
                     ESFTGRLADQASKANLMFEEGKNMTPVYTGALKDELVKTDKIYGKIKKRLLWGSDLAT
                     MIRCARAFGGLMDELKAHCVTLPVRVGMNMNEDGPIIFEKHSRYKYHYDADYSRWDST
                     QQRDVLAAALEIMVKFSPEPHLAQVVAEDLLSPSVMDVGDFQISISEGLPSGVPCTSQ
                     WNSIAHWLLTLCALSEVTDLSPDIIQANSLFSFYGDDEIVSTDIKLDPEKLTAKLKEY
                     GLKPTRPDKTEGPLVISEDLDGLTFLRRTVTRDPAGWFGKLEQSSILRQMYWTRGPNH
                     EDPSETMIPHSQRPIQLMSLLGEAALHGPAFYSKISKLVIAELKEGGMDFYVPRQEPM
                     FRWMRFSDLSTWEGDRNLAPSFVNEDGVE"
     gene            5078..6700
                     /gene="VP1"
     CDS             5078..6700
                     /gene="VP1"
                     /codon_start=1
                     /product="VP1"
                     /protein_id="ALD83748.1"
                     /translation="MKMASNDAAPSNDGATGLVPEVNNETLPLEPVAGAAIAAPVTGQ
                     NNIIDPWIRTNFVQAPNGEFTVSPRNSPGEILLNLELGPDLNPYLAHLSRMYNGYAGG
                     VEVQVLLAGNAFTAGKILFAAVPPNFPVEFLSPAQITMLPHLIVDVRTLEPIMIPLPD
                     VRNTFFHYNNQPTNRMRLVAMLYTPLRSNGSGDDVFTVSCRVLTRPTPDFEFTYLVPP
                     SVESKTKPFSLPILTISELTNSRFPVPVDSLFTAQNNNLNVQCQNGRCTLDGELQGTT
                     QLQPSGICAFRGKITADVRPNHDDRWHMQLTNLNGTPFDPTEDVPAPLGTPDFTGLLF
                     GVASQRNVQPNPNTTRAHEAVISTTSSQFVPKLGSINFGSTSEDFIVGQPTKFTPVGI
                     KIEDGHAFDQWTLPRYSGHLTLNMNLAPPVAPNFPGEQLLFFRSNVPCAGGISDGVID
                     CLLPQEWIQHFYQESAPSQSDVALIRYVNPDTGRTLFEAKLHRTGYITVAHSGDYPLV
                     VPSNGYFRFDSWVNQFYSLAPMGTGNGRRRVQ"
     gene            6700..7479
                     /gene="VP2"
     CDS             6700..7479
                     /gene="VP2"
                     /codon_start=1
                     /product="VP2"
                     /protein_id="ALD83749.1"
                     /translation="MAGAFIAGLAGDMLTNTVGSLANAGANAITQKIEFENNKQLQSA
                     SFQHDKDMLQAQVAATKQLQADMIAIKQGILTAGGFSPTDAARGAVGAPMTKVLDWSG
                     TRYWAPNSTRTTGYSGQFTSAPVHMPTKTIQPTPVKRTQPLSSSSGSIYSLSTQSTAL
                     TKPSSGSSSVSSASTQSTKLSSVSSMDRTANWVNQQRSLSPFMSGALNISHVTPPSSR
                     ASSSGTVSTVPKEVLDSWTPAFNTHRQPLFAHLRVRGESRV"
ORIGIN      
        1 aagatggcgt ctaacgacgc ttccgctgcc gctgctgcca acagcaacaa cgacaccgca
       61 aaatcttcaa gtgatggtgt gctctctagc atggctgtca cttttaaacg ggccctcggg
      121 gcgcggccta aacagccgcc cccgaaggaa ataccaccca gacccccacg gccacccaca
      181 ccagagttgg tcaaaaagat ccctcctccc ccacccaacg gggaggatga accagtggtt
      241 tcctatagcg ccaaagatgg tgtttccgga ctgcctgagc tcaccactgt cagacaaccg
      301 gatgaaatta acacggcgtt cagtgttccc ccgctcaacc aaagggagaa cagggacgcc
      361 aaggaaccat taactggaac aattattgaa atgtgggatg gagaaatcta ccattacggc
      421 ctgtacgtgg aacgaggtct tatacttggt gtgcataagc caccggcggc catcagcctt
      481 gccaaagtcg agctaacacc actctctctg ttctggagac ctgtatacac accccagtat
      541 ctcatctctc cagacactct caggagacta catggggagt cattccccta cactgcattt
      601 gacaacaatt gctacgcctt ctgttgttgg gtattagacc taaacgactc atggctaagc
      661 aggagaatga ttcagagaac aacaggtttc ttcagaccat accaggattg gaacaggaaa
      721 cccctcccca ctatggatga ttccaaattg aagaaggtag ccaacatatt cttgtgcact
      781 ttgtcttcac tattcaccag gcccattaag gacataatag gaaagctgaa accccttaac
      841 atccttaaca ttctggctac gtgtgattgg accttcgcag gcgtagtgga atccttgata
      901 ctcttggcag agctctttgg agtttactgg acacccccag atgtgtctgc gatgatcgcc
      961 cccttactag gagattatga attgcaagga cctgaggacc ttgcagtaga actggtccca
     1021 gtggtgatgg gggggatagg tttggtgcta ggatttacca aagagaaaat tggaaagatg
     1081 ctatcatccg ctgcatctac tttgagagct tgtaaagacc ttggtgcata cggactggaa
     1141 attttaaaac tagtcatgaa atggttcttc ccaaagaaag aggaagcaaa tgaactggct
     1201 atggtgagat ccatcgagga tgcagtgtta gacctcgaag caattgaaaa caatcacatg
     1261 accaccctgc tcaaagacaa agacagcttg gcaacctaca tgagaaccct tgaccttgag
     1321 gaggagaaag ctagaaaact ctcaaccaaa tctgcttcac ccgatattgt gggcacaatc
     1381 aacgcccttc tggcaagaat cgctgccgca cgctccctag tgcatcgggc gaaagaagag
     1441 ctctccagca ggccgagacc tgtcgttgtg atgatatcgg ggaaaccagg gataggaaaa
     1501 actcaccttg ccagggagtt ggccaagaag atcgcagcct ccctcacagg ggaccagcgt
     1561 gtgggcctta tcccgcgcaa tggtgttgac cactgggacg catacaaggg tgaaagagta
     1621 gtcctatggg acgactatgg aatgagcaac cccatccatg acgccctcag attgcaggaa
     1681 cttgctgaca cttgccccct cacgctaaat tgtgacagaa ttgagaacaa aggaaaagtc
     1741 tttgacagtg atgccataat tatcaccacc aatctggcca acccagcacc actggactat
     1801 gtcaacttcg aagcgtgctc gaggcgcatt gacttcctcg tgtacgcaga agctccggag
     1861 gtggaaaggg caaagcgcga cttcccaggt caacctgaca tgtggaagaa cgctttcagc
     1921 cctgacttct cacacataaa actgtcattg gctccacagg gtggttttga caagaacggc
     1981 aacaccccgc atggaaaagg tgtcatgaag accctcacca ctggctccct catcgcccga
     2041 gcatcagggc tactccatga gagactagat gaatatgaac tgcaaggccc agccctcacc
     2101 actttcaact ttgatcgcaa caagatactt gcttttagac agcttgctgc tgaaaacaag
     2161 tatgggctga tggatacaat gagagttgga aaacagctca aggatgtcaa gactatgcca
     2221 gacctcaaac aagcactcaa gaatgtcgcg atcaggaagt gtcagatagt gtacggtggt
     2281 agcacctaca cacttgaggc cgatggcaag ggtagtgtga aaattgacaa agtgcaaagt
     2341 gctgctgtgc aaactaacaa tgaaatagcc ggcgccctac accacctaag gtgcgccaga
     2401 atcagatact atgttaagtg tgtccaggag gcactgtatt ccatcattca aatcgctggg
     2461 gctgcattcg tcaccacgcg catcgctaag cgcatgaaca tacagaatct ctggtccaag
     2521 ccacaggtgg aagacataga agagacggcc agcaaagatg gttgcccaaa acccaaagaa
     2581 gatgaagagt ttgttgtttc atccgacgac atcaaaactg agggcaagaa agggaagaac
     2641 aagtctggtc gtggcaagaa gcacacagcc ttctcaagta aagggctcag tgatgaggag
     2701 tacgatgagt acaagagaat cagagaagaa aggaatggca agtattccat agaagagtac
     2761 ctacaggaca gagacaagta ctatgaggag gtggctattg ccagggcaac cgaagaagac
     2821 ttctgtgaag aagaagaggc caaaatccgg cagagaattt tcagaccaac aaggaagcaa
     2881 cgcaaagaag agagggcctc tctcggcttg gtcacaggct ctgaaattag gaagagaaac
     2941 ccagaagact ttaagcccaa gggaaagctg tgggctgatg atgacagaag tgttgactac
     3001 aatgagaaac tcaactttga ggccccgcca agcatctggt cgcggatagt caactttggt
     3061 tcaggttggg gcttctgggt ctcccccagt ctattcataa catcaaccca tgtcataccc
     3121 cagggtgcaa aagagttctt cggagtctct atcaaacaaa tccagataca caaatcaggt
     3181 gaattctgtc gattgagatt cccaaaacca atcagaactg atgtgacggg catgattcta
     3241 gaagaaggtg cgcccgaagg gaccgtggcc acactactca tcaagagacc aactggagag
     3301 ctcatgcctc tggcagccag aatgggaacc catgcaacca tgaagattca ggggcgcaca
     3361 gttggaggac aaatgggtat gctcctgaca ggatccaacg ccaagagcat ggacctaggc
     3421 acaacaccag gtgactgcgg ctgtccctac atctacaaga gagggaatga ctacgtggtc
     3481 ataggggtcc acacggccgc tgcccgtgga ggaaacactg tcatatgtgc cacccagggg
     3541 agtgagggag aagccacact tgaaggaggt gaaaacaaag gaacatactg cggtgcacca
     3601 atcttgggcc cagggagtgc tccaaaactc agcaccaaga ctaagttttg gagatcatcc
     3661 acaacaccac tcccgcctgg tacctacgaa ccagcctacc tcggcggcaa agatcccaga
     3721 gtcaaaggtg gtccttcatt gcaacaagtt atgagggacc agctaaagcc attcacagaa
     3781 cccagaggta aaccaccaaa accaaatgtg ttggaagctg ccaagaaaac catcatcaac
     3841 gttcttgagc aaacaattga cccacctcaa aaatggtcat tcgcgcaagc ttgcgcatcc
     3901 cttgacaaaa ccacctccag cggccatccg caccatatgc ggaaaaacga ttgttggaat
     3961 ggggagtcct tcacaggaag attggcagat caggcctcca aggccaacct aatgtttgaa
     4021 gagggaaaga acatgactcc agtctacaca ggtgcactta aagatgaatt ggtaaagact
     4081 gacaaaattt atggtaagat caagaagagg cttctgtggg gctcagactt ggcgaccatg
     4141 atacggtgcg cccgagcttt tggaggtctt atggatgaac tcaaggcaca ctgtgtcacc
     4201 cttcctgtca gagttggtat gaacatgaat gaggatggcc ccatcatctt tgagaaacac
     4261 tccagatata aatatcacta tgatgctgat tattcccggt gggactcgac acaacaaagg
     4321 gatgtgctgg cagcagcact agaaattatg gttaaattct ctccagaacc acacctggct
     4381 caggtagttg cagaagacct cctctccccc agtgtaatgg atgtaggtga ctttcaaata
     4441 tcaataagtg agggactccc ctctggggtg ccttgcacct cccagtggaa ctccatcgcc
     4501 cactggctcc tcactctttg tgcactctct gaagtcacgg acctgtcccc tgacatcatc
     4561 caggccaact cccttttctc cttctatggt gatgatgaga ttgtgagcac agacataaag
     4621 ttggacccag agaagctgac agcaaaactc aaggagtacg ggctgaaacc aacccgtccc
     4681 gacaaaactg aaggacccct tgttatctct gaagatctgg atggcctgac attcctccgg
     4741 aggactgtga cccgtgaccc agctggttgg tttggaaaat tggaacaaag ctcaattctc
     4801 aggcaaatgt actggactag gggtcccaac catgaagatc catctgaaac aatgatacca
     4861 cactcccaaa gacccataca attgatgtcc ttgctgggcg aggctgcact ccacggccca
     4921 gcattttaca gcaaaattag taaattggtc attgcagagt tgaaggaagg tggcatggat
     4981 ttttacgtgc ccagacaaga gccaatgttc agatggatga gattctcaga tctgagcacg
     5041 tgggagggcg atcgcaatct ggctcccagc tttgtgaatg aagatggcgt cgaatgacgc
     5101 cgctccatct aatgatggtg ccacgggcct cgtcccagag gtcaacaacg agacccttcc
     5161 tctggaaccg gtagcgggtg cagctattgc cgcgcctgtt actggccaaa ataatataat
     5221 tgatccctgg attagaacaa attttgtaca agcacccaat ggggagttca cagtctcacc
     5281 cagaaactct cctggagaaa ttcttctaaa tttggaattg ggtcctgatt taaatccata
     5341 tctggcacat ttatctagaa tgtataatgg gtacgctggt ggcgtagaag ttcaagtcct
     5401 ccttgcaggg aatgcgttca ctgcaggaaa gattctcttc gctgccgtac caccaaattt
     5461 cccagttgaa ttcttgagtc ctgcacaaat caccatgttg ccacatttaa tagttgatgt
     5521 tagaaccctt gaacccatca tgataccact ccctgatgtt aggaacacct tcttccatta
     5581 caataatcaa cctaccaatc gcatgcgatt ggtagccatg ttgtacaccc ccctgagatc
     5641 taatggttct ggtgatgatg ttttcacagt gtcatgtaga gtgctaacta gacccacccc
     5701 agattttgag ttcacatatt tggtcccccc ttcggtagag tctaagacta aacccttttc
     5761 tctgcccata ctaaccatct ctgaattgac caattcaaga tttcctgtac cggtggattc
     5821 attgttcaca gcccaaaaca ataatcttaa tgttcaatgt caaaatggtc gctgcacatt
     5881 agatggtgag ttgcagggaa ccactcagtt gcaaccatca ggcatctgcg cctttagagg
     5941 caaaataacg gcagatgtac gtccaaacca cgatgacaga tggcatatgc aattgacaaa
     6001 cctcaatgga acccccttcg acccaacaga ggatgtgcca gctccactgg gcaccccaga
     6061 tttcacaggc cttctcttcg gagtggcaag ccaaagaaat gttcaaccta acccaaacac
     6121 caccagggca catgaagccg tgatatccac aaccagttca cagtttgtgc caaaattagg
     6181 atcaatcaac tttggtagca caagtgaaga tttcattgtg ggccagccca caaaatttac
     6241 accagttggc atcaagattg aggatggaca tgcatttgat caatggaccc tacccaggta
     6301 ttcaggccat ttaactctca atatgaatct tgccccacct gttgctccaa atttccctgg
     6361 tgaacaatta ctcttcttta ggtcaaatgt cccctgtgcc ggcggcatta gcgatggtgt
     6421 catcgattgc ttgttgcctc aggagtggat acagcacttc taccaggagt ctgctccctc
     6481 ccagtccgat gtggccctga tcagatacgt caaccccgac acgggccgca cacttttcga
     6541 ggcgaaactc catagaacag gctacatcac tgttgctcat tcaggtgatt atccccttgt
     6601 tgtcccctcc aatggatact ttagatttga ttcttgggtg aaccaatttt actcacttgc
     6661 ccccatggga accgggaatg ggcgcagacg ggtgcagtaa tggcaggagc ttttatagca
     6721 ggtctagcag gtgacatgct caccaacaca gttggctcat tggcgaacgc cggggccaat
     6781 gccatcactc aaaagataga atttgaaaac aacaaacagc tccaatctgc ctccttccaa
     6841 catgacaaag acatgctcca agcacaagtg gctgccacca agcagttaca ggctgatatg
     6901 atcgccatca agcaggggat actgaccgcg ggcggctttt cccctactga tgcggcgaga
     6961 ggagcagtgg gtgcacccat gaccaaagtc ctcgactggt ctggtactcg ttactgggct
     7021 ccaaattcca cgaggacaac aggttactca gggcagttta catcagcacc agtgcacatg
     7081 cctacaaaaa caattcagcc cactcctgtt aaaaggactc agcctctttc ttcctcttca
     7141 ggtagtatct atagtctttc aacacagagc actgccttga ccaagccctc ttcaggctct
     7201 tcttctgttt cttctgcttc tacacaatct acaaaattga gttcagtttc ttcaatggat
     7261 agaacagcaa attgggtaaa tcagcaaaga agcctcagcc ccttcatgag tggtgcactc
     7321 aacatatctc atgtaacacc tccatcgagc agggcttcga gttcggggac agtctcaact
     7381 gtacccaaag aagttttgga ctcctggaca cctgcattca acacacacag acagccgctc
     7441 ttcgcacacc tcagagtgag gggggagtca cgtgtttagt gaaaagaatc aattagtttt
     7501 aattaaattt tgattggatt taattttaat tggatctttt aaaaaaaaaa
//