Typing tool

Complete norovirus genomes

KP407450  GI.8
 GI.P8

Length: 7,740 | 3 CDS

ORF1: 5..5404
ORF2: 5388..7019
ORF3: 7019..7660
LOCUS       KP407450                7740 bp    RNA     linear   VRL 08-APR-2016
DEFINITION  Norovirus GI strain Hu/CHN/2008/GI.P8_GI.8/Huzhou/N10, complete
            genome.
ACCESSION   KP407450
VERSION     KP407450.1
KEYWORDS    .
SOURCE      Norovirus GI
  ORGANISM  Norovirus GI
            Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
            Picornavirales; Caliciviridae; Norovirus.
REFERENCE   1  (bases 1 to 7740)
  AUTHORS   Ji,L., Wu,X., Chen,L., Xu,D., Shen,Y., Zha,Y., Zhu,X. and Han,J.
  TITLE     Molecular Characteristics of Noroviruses Causing Outbreaks of Acute
            Gastroenteritis in Huzhou
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 7740)
  AUTHORS   Ji,L., Wu,X., Chen,L., Xu,D., Shen,Y., Zha,Y., Zhu,X. and Han,J.
  TITLE     Direct Submission
  JOURNAL   Submitted (07-JAN-2015) Microbiological Laboratory, Huzhou Center
            for Disease Control and Prevention, 999 Changxing Road, Wuxing,
            Huzhou, Zhejiang 313000, China
COMMENT     ##Assembly-Data-START##
            Sequencing Technology :: Sanger dideoxy sequencing
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..7740
                     /organism="Norovirus GI"
                     /mol_type="genomic RNA"
                     /strain="Hu/CHN/2008/GI.P8_GI.8/Huzhou/N10"
                     /isolation_source="stool samples"
                     /host="Homo sapiens"
                     /db_xref="taxon:122928"
                     /country="China"
                     /collection_date="2008"
                     /note="genotype: GI.P8_GI.8"
     CDS             5..5404
                     /codon_start=1
                     /product="polyprotein"
                     /protein_id="AKM20814.1"
                     /translation="MMMASKDAIAVADVSNNNANTNNENIGSRLMARIRGRIGPQRGE
                     TTTKIKDANMALDLLRRSQTPSPARQESPPKDQRDRPPRTVSEVKRAMKWDVEPEHRE
                     STARAWCDLSKEEKEEIMRNNEKLFDAGGVTPSTLPSTFERAETNNDVGDQQAVSWSA
                     NDGVNIGVSDLTTVHGPFWNMCPLPPLDARNNGPAKEPLIGDMIEFYEGHIFHYAIYI
                     GQGKTIGVHSPQAAFSIPRITIHPLVAWWRVCYVPNDRQRLTYDQLKELENEPWPYAA
                     VTNNCYEFCCRVMALDDTWLQRRLVSTGKFNHPTQDWSQDTPDFHQDSKLEMVRDAVL
                     SAINGLVSQPFKNILSKIKPLNVLNLLSNCDWTFMGVVELIVLMAELFDIFWTPPDIS
                     SFIASLLPDFHLQGPEDLARDLVPLILGGIGLAIGFTRDKITKVMKSAVDGLRSATQL
                     GQYGLEIFSIIKKYFFGGDQTEKTLRGIEDAVIDMEVLSSTNVTQLVKDKKLARTYMN
                     VLDNEEEKARKLSVRSADPHIVTSVNNLISRISMARSALAKAQAEMTSRPRPVVIMMC
                     GPPGIGKTKAAEHLAGRLAAEIRSGGKVGLVPRESIDHWDGYHGEDVLLWDDYGMSKI
                     TEDCNKLQAIADTAPLSLNCDRIENKGMQFSSDAIIITTNAPGPAPVDFVNLGPVCRR
                     VDFLVYCSAPEIEQMRRAHPGDTNAIKDLYKKDFTHLKMELAPQGGFDSQGNTPFGKG
                     VMKPTTLNRLLIQATALAMERQDEFQLQGATYNFDEDRVAAFTNLARANGLGLISMAT
                     LGKKLRGVKSMEGLRNALLGYKIEECDIVWNTRMYSIKSDGNTVTIKEKQAPTSPQHQ
                     AICTATLALSRLRAARALAYASCLQSAVLSILQVAGSAVVVSRAVKRMFGTRTEQPML
                     EGKHKEHNCRVHRAEAAGHGPIGHDGVIERYGLCESEQEEESVQTVELPTASEEGKNK
                     GKTKKGRGRKSNFNAFSRRGLSDEEYEEYKKIREEKSGNYSIQEYLEDRQRYEEELAE
                     VQAGGDGGIGETEAEIRHRVFYKSKSGMRKQRQEERRQLGLVSGTEIRKRKPIDWTPP
                     KNDWSEDTRTVNYDEHISFEAPPSIWSRVVKFGSGWGFWVSSTVFITTTHVIPPGAKE
                     VFGESISNVAIHRVGEFTQFRFPKKMRPDLSGMVLEEGCPEGTVCTIMIKRDSGELLP
                     LAVRMGAVASMKIQGKLMHGQSGMLLTGANAKGMDLGTIPGDCGAPYVHKRGNDWVVC
                     GVHAAATKSGNTVVCAIQGGEGEATLEGGDRNKGHYAGHPILRYGNGPSLSTKTKFWK
                     STPQPLPPGTYEPAYLGGRDPRVEGGPSLQQVLRDQLKPFAEPRGRLPEAGLLEAAVE
                     TVTNALEQVMDTPVAWSFSDACMSLDKTTSSGYPHHKRKNDDWNGSSFVRELGDQAAH
                     ANNMYELGKPMKPVYTAALKDELVKPDKVYNKIKKRLLWGADLGTVIRAARAFGPFCE
                     AIKPHVIKLPIKVGMNAIEDGPLIYAEHSKYKYHYDADYTAWDSTQNREIMMESFNIM
                     CKLTANPSLAAVVAQDLLSPSEMDVGDYVISVKDGLPSGFPCTSQVNSINHWIMTLCA
                     LSEVTGLSPDVIQSQSYFSFYGDDEIVSTDIEFDPAKLTQILKEYGLKPTRPDKTDGP
                     IIVRQQVDGLVFLRRTISKDAIGYQGRLDRNSIERQLWWTRGPNHEDPFETLVPHSQR
                     KVQLISLLGEAALHGEKFYRKIASRVIQEVKEGGLEIYIPGWQAMFRWMRFHDLSLWT
                     GDRDLLPDYVNDDGV"
     gene            5388..7019
                     /gene="VP1"
     CDS             5388..7019
                     /gene="VP1"
                     /codon_start=1
                     /product="VP1"
                     /protein_id="AKM20815.1"
                     /translation="MMMASKDAPTNMDGTSGAGQLVPEANTAEPLPIKPVAGAATAVA
                     TAGQVNMIDPWIMNNFVQAPQGEFTISPNNTPGDILFDLQLGPHLNPFLAHLSRMYNG
                     WVGNMQVRIMLAGNAFSAGKIIVCCIPPGFSSQSISIAQATMFPHVIADVRVLEPIDV
                     PLDDVRNVLFHNNDNPQTMRLLCMLYTPLRSGGTSSGTDPFVIAGRVLTCPTPDFSFL
                     FLVPPDIEQRTKPFSVPNIPMNLMSNSRVSMLIDGMMVSNDQNQVPQFQNGRVTLDGQ
                     LQGTTTVSAACVARMRGRIFNNNGNYGVNLTELDGNPYHAFDSPAPLGFPDFGNCDLH
                     MTFVKINPNELSSGDPSGKVVIRSYDATFAPHLGTVKLENDDELARFVGKEVVLELTW
                     VSNREGATLNLWAVPNYGSSLTQASQLAPPIYPPGFGEAIVYFTSTFPTVSNPKVPCT
                     LPQEFVSHFVNEQAPTRGDAALLHYVDPDTHRNLGEFKMYPEGYMTCVPNAGGGPQTL
                     PINGVFVFISWVSRYYQLKPVGTAGAARRLGLRRS"
     gene            7019..7660
                     /gene="VP2"
     CDS             7019..7660
                     /gene="VP2"
                     /codon_start=1
                     /product="VP2"
                     /protein_id="AKM20816.1"
                     /translation="MAQAVLGAIAATAAGSAVGAGIEAGTQAALQHQRYQQDLNMQSL
                     SFQHDKEMLGLQVDASNALLQRNLATRYNLLSAAGLSSADAARMIAGAPPTKVVDWNG
                     VRISAPTSSAITLKSGSFMSVPVMNYKTNKNVTGIDNPNYAPSGSSMVSRTSQWVESQ
                     NSLRSLDPFHRSALQTTWVTPPGSTSVSTVSSTSTIPRYFNTERLPLFANLRK"
ORIGIN      
        1 gtgaatgatg atggcgtcga aagacgctat tgccgttgct gatgtcagca ataacaatgc
       61 taacaccaac aatgaaaata ttgggtcccg ccttatggcg aggatccgtg ggcgcatagg
      121 cccacaacgt ggtgaaacaa ctacaaagat taaggatgcc aatatggcac ttgacctgct
      181 acgccggtca caaacaccct ccccagctcg acaagagagc ccccccaaag atcagagaga
      241 ccgtcctcca cgaaccgttt cagaggttaa aagggccatg aagtgggatg tcgaaccaga
      301 acaccgggaa agtacagcaa gagcctggtg cgatctctcg aaagaagaaa aagaggagat
      361 aatgcgcaac aatgagaagc tatttgatgc tgggggagtc actccatcaa ctctacccag
      421 cacatttgaa agggctgaaa caaacaatga tgttggtgac caacaagctg tatcatggtc
      481 tgctaatgat ggagtgaata ttggcgttag tgatctgacc actgtccatg gaccattttg
      541 gaatatgtgc cccctcccac cattggacgc tcgcaacaat ggtcctgcca aagagcccct
      601 cataggggat atgatagagt tttatgaagg ccacatattc cactatgcca tttatatagg
      661 gcaaggtaag actattgggg tccactcgcc acaggctgct ttttccatac ccagaataac
      721 catccaccct ttggtggctt ggtggcgcgt gtgttatgtt cccaatgacc gtcaacgcct
      781 cacctatgat caacttaaag aattggagaa tgaaccatgg ccatatgccg ctgttactaa
      841 caactgctat gaattttgtt gtagagtgat ggcgctagat gacacttggc tccaaaggag
      901 actggttagc actggaaagt tcaaccaccc cacacaggat tggtcacaag acaccccaga
      961 cttccaccaa gattcaaagt tagaaatggt gagagatgct gtattgtcag ccatcaacgg
     1021 tcttgtgtca caacccttca aaaacattct ttcaaagatt aagccattaa atgtgctcaa
     1081 tcttttatca aactgtgatt ggaccttcat gggggttgta gagctgatcg tcctcatggc
     1141 agaattgttc gacatattct ggactccacc agatatctcg agctttattg catcgctgtt
     1201 gccagacttt catcttcaag gcccagagga cttagctagg gacctggtcc cactcatact
     1261 aggtggcatt ggcctagcaa ttggctttac aagagacaag ataacaaaag tgatgaagag
     1321 tgccgttgat ggtctgcggt cagcgacgca gcttggacag tatggattag aaatattctc
     1381 aatcataaag aaatacttct ttggaggtga ccagacagaa aagaccctcc ggggcatcga
     1441 ggatgcagtg atagacatgg aggtattgtc cagcaccaac gtaacacaat tggtcaagga
     1501 caagaagttg gccagaactt acatgaatgt actggataat gaggaagaaa aggctagaaa
     1561 actctcagtc cgcagtgctg acccacacat agtaacctca gtcaacaact tgatatcccg
     1621 catttcaatg gcaagatcag ccctggccaa ggcccaagca gagatgacat cccgcccacg
     1681 cccagtggtc ataatgatgt gtggtccccc tggcattggg aaaacgaaag ctgctgagca
     1741 tctggcgggc cgattggctg ccgaaataag atcaggggga aaagtcggtc ttgtgccgcg
     1801 agagtccata gaccactggg acggttatca tggtgaggac gttctgctct gggatgatta
     1861 tggtatgtca aaaataacag aagattgcaa taaattgcaa gccatagctg acactgcacc
     1921 actgtcactc aattgtgaca ggatagaaaa caaaggcatg cagttctcct ctgatgcaat
     1981 aattattacc accaatgctc ctggtccagc tccagttgac tttgttaatc tgggtcctgt
     2041 gtgcaggcgg gtagactttt tagtatactg ctctgctcca gaaattgaac aaatgcggag
     2101 ggcccaccca ggtgacacta atgctattaa ggacctgtac aagaaagatt tcacgcacct
     2161 caagatggaa ttagctccac aaggtggctt tgatagccag ggcaacacgc cgtttggaaa
     2221 aggtgttatg aagcccacaa ccctcaatag gctattgatc caggccacag cattagccat
     2281 ggagcggcaa gatgagtttc agcttcaagg ggccacctac aattttgacg aggatagggt
     2341 ggccgctttc accaacttag cacgcgccaa tggcctggga ctcataagca tggcaacatt
     2401 gggtaagaaa ttgaggggtg tcaaatcaat ggaggggctg cgcaatgcac tattgggcta
     2461 taaaatagaa gaatgtgaca tagtctggaa caccagaatg tactctatta agagtgacgg
     2521 gaataccgtc acgattaaag agaagcaggc accaacctcg ccccaacacc aggctatctg
     2581 cacggccacc ctcgcgctct cccggttgcg ggctgctagg gcccttgcat atgcttcttg
     2641 cttacagagt gctgtgctgt caatacttca ggtggctgga tccgctgtgg tggtgagcag
     2701 ggccgttaag cgtatgtttg gtacgcgcac cgaacagcct atgctagaag gtaagcacaa
     2761 ggaacataat tgcagagtgc accgagctga ggcagccggc catggcccca ttggccacga
     2821 tggggtcatt gaacgctatg gcctgtgtga gagtgaacaa gaggaggaaa gcgtccagac
     2881 agtagaacta cccactgcca gtgaggaggg caagaacaaa ggtaagacca agaagggtcg
     2941 tgggcgaaag tctaatttca atgccttctc cagacgcggc cttagtgatg aggagtatga
     3001 ggaatacaag aaaatcaggg aggagaaaag tggcaactac agtatacaag agtaccttga
     3061 agaccgacaa cgctacgagg aagagcttgc tgaagtgcag gcgggcggag atggcggaat
     3121 aggtgaaact gaggcagaaa tccgccatcg ggtcttctat aaatcaaaat ctggtatgag
     3181 gaaacaacgc caagaagaac ggcgccagct agggctcgtg agcggcaccg agatcagaaa
     3241 gcgcaaaccc atagactgga ccccccccaa gaacgattgg tcagaggaca ctagaacagt
     3301 caattatgac gaacatatca gttttgaagc accaccctca atctggagta gagtggtaaa
     3361 atttggtagt ggttggggtt tctgggttag ctcaacagtg ttcatcacca cgacccatgt
     3421 cataccacct ggggccaagg aagtttttgg tgaaagcatc agtaatgtgg ctatccatag
     3481 agtcggtgaa ttcacccagt ttcgcttccc taaaaagatg agacctgatc tctctggtat
     3541 ggtgctagag gaaggttgtc cagaaggcac agtatgcacc ataatgataa agagagactc
     3601 tggtgagctg ttaccacttg ctgtccgcat gggtgcagtg gcctcaatga aaatccaagg
     3661 aaagctcatg catggacaat caggaatgtt gctcactggc gccaatgcca aaggcatgga
     3721 cctcgggacc atacccggtg actgtggggc gccttacgtc cacaaaaggg gtaacgattg
     3781 ggttgtttgc ggagtccatg cagctgccac aaaatcaggt aacactgtag tttgtgctat
     3841 acaaggtggt gagggtgaag ccacgctaga gggtggcgac cgcaataagg gccattatgc
     3901 tggacaccca atattgagat acgggaatgg cccttcactc tcaactaaaa caaaattttg
     3961 gaagtcaacc ccacaacccc tacctccagg tacttatgaa ccagcttatc tcggaggtag
     4021 agaccccagg gtcgaagggg gcccatcact acaacaagtt ctaagggacc agctaaaacc
     4081 atttgctgaa ccccgaggca gattacctga ggcgggattg ctagaagccg cagttgagac
     4141 agtcaccaat gcacttgaac aggtcatgga cacaccagtg gcatggagtt tcagtgatgc
     4201 ttgcatgtct ttggataaaa caactagctc tggctatccc caccataaga ggaagaatga
     4261 tgattggaat gggagctcat tcgtgcgaga gctgggagac caagcagccc atgccaataa
     4321 catgtatgaa cttggcaaac ccatgaagcc cgtgtataca gcagccctca aggacgagct
     4381 tgttaaacca gataaggttt acaataaaat caagaagaga ctgctttggg gagctgacct
     4441 tggtactgtc atacgtgctg ctagggcctt tggaccattc tgtgaggcca taaagccaca
     4501 tgtgattaag ttgcctatca aagtgggcat gaatgccata gaagatggcc ctctgatata
     4561 tgcagaacat tctaaatata agtaccatta tgatgctgat tacactgctt gggactcaac
     4621 gcaaaacaga gagattatga tggagtcctt caatatcatg tgcaagctca cagccaatcc
     4681 ctccttggct gcggtggtgg ctcaggacct actctcccca tctgagatgg atgttggtga
     4741 ttatgtaatc agtgttaaag atggtctgcc atctggcttt ccatgcacct cacaagttaa
     4801 cagcattaac cactggatca tgaccctatg tgcactatca gaggtcactg gcttatcccc
     4861 tgatgtaata caatcacaat cctacttctc cttctacggt gatgatgaga tagtctcaac
     4921 agacattgaa tttgacccag ctaaattgac acaaatatta aaagagtatg gcctgaaacc
     4981 cacaaggccc gataaaactg atggccccat tatagtcagg caacaggtgg atggtctggt
     5041 cttccttcgt cgcacaattt cgaaggacgc tattgggtac caaggtcgac ttgaccgcaa
     5101 ctccattgaa agacaactct ggtggacccg cggacccaac catgaagacc cgtttgagac
     5161 tctggtgcca cactcacaaa gaaaagttca attgatatcc ctactgggtg aggccgccct
     5221 acatggtgaa aaattctaca ggaagatagc cagtagggtt atccaagaag ttaaggaagg
     5281 gggtctggag atctatatcc ctgggtggca ggccatgttc cgctggatgc gattccatga
     5341 cttaagtttg tggacaggag atcgcgatct cttgcccgat tatgtaaatg atgatggcgt
     5401 ctaaggacgc cccaacaaac atggatggca ccagtggtgc cggtcagctg gtaccagagg
     5461 caaatacggc tgaaccttta ccaataaaac cagtggccgg ggctgcgact gcggttgcaa
     5521 ccgccggtca ggtaaatatg attgacccct ggataatgaa caattttgta caggctcccc
     5581 aaggggagtt taccatttcc ccaaataata cacctggtga tattttattt gatttgcaat
     5641 taggaccaca tcttaatcct ttcttggctc atttgtctag aatgtataat ggttgggttg
     5701 ggaatatgca ggtccgcata atgcttgctg gtaatgcctt ttcagctgga aagattattg
     5761 tgtgctgcat accgccgggt ttttcttctc aatctatttc tattgctcaa gctacaatgt
     5821 tcccacatgt catagctgat gtcagagtgt tagaacctat tgatgtaccc ttagatgatg
     5881 ttagaaatgt cctttttcat aataatgata acccccaaac gatgagattg ctttgcatgt
     5941 tgtatacacc ccttcggtct ggtggtacat cttcaggtac agatcctttt gtcattgctg
     6001 gtcgtgtctt gacctgcccc acacctgatt ttagtttctt gttccttgtc cctcctgata
     6061 tcgagcaaag aactaagccc ttcagtgtac ccaatatccc tatgaacctg atgtccaatt
     6121 cccgtgtttc aatgttgatt gatggtatga tggtttcaaa tgatcagaat caagtccccc
     6181 agtttcagaa tggtcgagtc actttagatg gacagctgca gggtaccacc acagtttcag
     6241 ctgcgtgtgt agcaaggatg agggggcgca tttttaataa taatggcaat tatggtgtga
     6301 atctgactga actggatggc aatccctatc atgcctttga tagcccggct cctttaggct
     6361 ttcctgactt tgggaattgt gatttgcaca tgacctttgt taaaattaat cccaatgagt
     6421 tgtcctctgg agacccttct ggcaaagtgg tcattcgttc ctacgatgcc acttttgccc
     6481 cccatcttgg tactgtcaaa ctggagaatg atgatgagct agctcggttt gtgggtaagg
     6541 aggtagtact ggagctgacg tgggtttcca acagagaggg tgccaccctt aatctatggg
     6601 ctgttccaaa ttatggttcc agtttgacac aggcgtcaca gcttgcccca ccaatttacc
     6661 cccctgggtt tggtgaggct attgtgtatt tcacctctac ttttccaaca gtcagcaacc
     6721 caaaagtccc atgtacactt cctcaagaat ttgtttcaca ttttgtcaat gaacaggccc
     6781 ccacacgcgg cgatgccgct cttcttcatt atgttgatcc tgacacacac cgtaatcttg
     6841 gagagtttaa gatgtaccct gagggctaca tgacatgtgt ccctaatgct ggtggtgggc
     6901 cacaaacctt accaatcaat ggtgtatttg tcttcatttc ttgggtttct agatattacc
     6961 agttaaagcc tgtgggaact gccggtgcgg ctaggaggct tggtcttagg agatcataat
     7021 ggcccaggct gtcttgggag ccattgctgc gactgcagca ggaagtgctg tgggagcagg
     7081 tattgaagct ggcacacagg ccgccctaca acatcaaagg tatcaacagg atttaaatat
     7141 gcagtcccta tcctttcaac atgataaaga aatgttaggc ttacaagtag atgcttctaa
     7201 tgctttattg caaagaaatt tggccacaag atataatttg ctgagtgcag caggcttgtc
     7261 gtctgcagat gctgctagga tgatagcggg tgctccacca actaaagtag tggattggaa
     7321 tggagtcaga atatctgccc ccacatcaag tgcaataact ctaaaatctg gcagttttat
     7381 gtcagtgcca gtcatgaatt acaaaaccaa caagaatgtg acaggcatag acaacccaaa
     7441 ttatgcaccc agtggctcat caatggttag tcgcaccagc caatgggtgg aatctcaaaa
     7501 ttcattgcgc tcgcttgatc ctttccatag gagcgcgttg caaacaacgt gggttactcc
     7561 tccaggatcc acatctgtgt caacagtgtc aagcacttca acaataccta ggtattttaa
     7621 tactgaaaga cttccgttat tcgcaaatct gcggaagtaa gtttttgtaa tataaagtgg
     7681 gcattatatt cagattggct tttgattata attaatttgg ctgattagaa atttaatgtt
//