Typing tool

Complete norovirus genomes

KJ196295  GII.7
 GII.P7

Length: 7,543 | 3 CDS

ORF1: 5..5098
ORF2: 5079..6701
ORF3: 6701..7474
LOCUS       KJ196295                7543 bp    RNA     linear   VRL 10-AUG-2014
DEFINITION  Norovirus
            GII/Hu/JP/2010/GII.P7_GII.7/Musashimurayama/TAKAsanKimchi, complete
            genome.
ACCESSION   KJ196295
VERSION     KJ196295.1
KEYWORDS    .
SOURCE      Norovirus GII/Hu/JP/2010/GII.P7_GII.7/Musashimurayama/TAKAsanKimchi
  ORGANISM  Norovirus GII/Hu/JP/2010/GII.P7_GII.7/Musashimurayama/TAKAsanKimchi
            Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
            Picornavirales; Caliciviridae; Norovirus.
REFERENCE   1  (bases 1 to 7543)
  AUTHORS   Park,Y., Wu,F.-T., Miki,M., Amano,K., Ozawa,K., Murakami,K.,
            Todaka,R., Shimoike,T., Oka,T., Uchida,K., Shinohara,M. and
            Katayama,K.
  TITLE     Direct Submission
  JOURNAL   Submitted (17-JAN-2014) Department of Virology II, National
            Institute of Infectious Diseases, 4-7-1 Gakuen Musashi-Murayama,
            Tokyo 208-0011, Japan
COMMENT     ##Assembly-Data-START##
            Sequencing Technology :: Sanger dideoxy sequencing
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..7543
                     /organism="Norovirus
                     GII/Hu/JP/2010/GII.P7_GII.7/Musashimurayama/TAKAsanKimchi"
                     /mol_type="genomic RNA"
                     /isolate="Musashimurayama/TAKAsanKimchi"
                     /host="Homo sapiens"
                     /db_xref="taxon:1529923"
                     /country="Japan"
                     /collection_date="2010"
                     /note="genotype: GII.P7_GII.7"
     CDS             5..5098
                     /codon_start=1
                     /product="polyprotein"
                     /protein_id="AII73773.1"
                     /translation="MKMASNDATAAFGSQNSVNDSNNATPSNKEEVGAFSNIKVGFKK
                     MLGAVPKGIKAPSSGQHCPTVKIGPKTLTIPPEPPNGEDTVQFDAKSETIIGLPDLTT
                     VQNEHENTPYTVPPLSEREHRPATEPLPGTILEMWDGEFYHYSVYVSDGKALGVHKPP
                     AAISLATIELTPISLYWRPVYTPNYLVSPDTLKGLAGEKFPYTAFSNNCYNFCCWVLE
                     LNDTWLNRRCISRTTGFFKPYQSWNRKPLPTVDDGKIKKVANAILCALGSLFSKPIKD
                     LLGKLKPLNLLHLLASCDWTFAGIVETVILMAELFNVFWTPPDVSNFVASLIGDFELQ
                     GPEDLAVELVPVVMGGIGMVLGFTAEKIGRMLSSAASTLRACKDLGNYALDILKLVMK
                     WFFPKKEEKAEMETLRAIEDAVLDMEAIGNNHLTTLLKDKDSLTAFMKTLDLEEEKAR
                     KLSTKSSSPDIVGTINAILARIAAARSLLHKAKEEMFSRIRPVVVMISGRPGIGKTHM
                     ARHLAKSIANTMSGDQRVGLVPRNGVDHWDAYRGERVVLWDDYGMGSPVKDALTLQEL
                     ADTCPVTLNCDRIENKGKMFDSDVIIITTNLVNPAPLDYVNFEACSRRVDFLVYAESP
                     EIEKVKRDFPGQPDMWKDHFKPDFSHIKLTLAPQGGFDKNGNTPHGKGTMRSLTQGSL
                     TARVAGLVHERRDEFQLQGNDLQTYNFDTNRVSAFRKLAADNKYGIMETMRVGAALKN
                     VKTLEDLKIALRDVKFNECEIIYKNSKYRVSSNGKGSVSVDKVEDNASQTVNEVQSAL
                     LRLRQARARYYISCFQDLVYTLIQVAGASFVVNRISRRFCWERWVKPTETQEVNEPEK
                     EVAQGRWEIEPKDTEPEGKKGKNKKGRGKKHTAFSSKGLSDEEYDEFKRIREERNGKY
                     SIEEYLQDRDRYYEEVAVARATEEDFCEEEEAKIRQRIFRPTKKQRKEERGVLGLVTG
                     SDIRKRRPDDFQPKGNLWADDTRSVDYNERLDFEAPPSVWSRIVPLGTGWGFWVSSNL
                     LITTTHVLPKGVKELFGVEIKQIQVHKSGEFCRFRFPRPIRPDVTGLVLEEGAPEGTV
                     CSILIKRPTGEMIPLAVRMGTHASMKIQGRTVGGQMGMLLTGANAKNMDLGTGPGDCG
                     CPYIYKRGNDIVVAGVHTAAARGGNTVICATQGQDGEAVLEGNEDLGTYCGAPILGPG
                     KAPKLSTKTKFWRSSPDALPPGTYEPAYLGGKDPRVEKGPSLQQVMRDQLRPFTEPRG
                     KPPRPAVLEEAKKTVMNVLEQTIDPAKPWSYSQACASLDKTTSSGSPHHVKKNDHWNG
                     ESFTGPLADQASKANLMYEQAKHVQPVYTAALKDELVKTDKIYKKIKKRLLWGSDLGT
                     MIRCARAFGGLMDSMKASCIALPCRVGMNKNEDGPIIFDKHSKYRYHYDADYSRWDST
                     QQRSILSAAMEVMVRFSAEPELAQVVAEDLLAPSQLDVGDFVISVQEGLPSGVPCTSQ
                     WNSIAHWILTLSAMAEVSGLSPDVVQAHSCFSFYGDDEIVSTDINLDPMKLTQKLREY
                     GLVPTRPDKTEGPLVITEDLTGLTFLRRSIARDPAGWFGKLDQDSILRQLYWTRGPNH
                     ENPYESMVPHSQRATQLMALLGEASLHGPQFYKKVSKMVINEIKSGGLEFYVPRQEAM
                     FRWMRFSDLSTWEGDRNLAPEGVNEDGVE"
     gene            5079..6701
                     /gene="VP1"
     CDS             5079..6701
                     /gene="VP1"
                     /codon_start=1
                     /product="VP1"
                     /protein_id="AII73774.1"
                     /translation="MKMASNDAAPSNDGAAGLVPEINNEVMPLEPVAGASLATPVVGQ
                     QNIIDPWIRNNFVQAPAGEFTVSPRNSPGEILLDLELGPELNPYLAHLARMYNGHAGG
                     MEVQIVLAGNAFTAGKIIFAAIPPGFPYENLSPSQITMCPHVIIDVRQLEPVLLPMPD
                     IRNNFFHYNQGNDPKLRLIAMLYTPLRANNSGDDVFTVSCRVLTKPSPDFEFTFLVPP
                     TVESKTKQFTLPILKISEMTNSRFPVPVEMMYTARNENQVVQPQNGRVTLDGELLGTT
                     PLLAVNICKFKGEVIAKNGDVRSYRMDMEITNTDGTPIDPTEDTPGPIGSPDFQGILF
                     GVASQRNKNEQNPATRAHEANINTGGDQYAPKLAQVKFFSESQDFEVHQPTVFTPVGV
                     AGDTSHPFRQWVLPRYGGHLTNNTHLAPAVAPLFPGEQILFFRSQIPSSGGHELGYMD
                     CLVPQEWVQHFYQEAATAQSEVALIRFINPDTGRVLFEAKLHKQGFITVAHTGDNPIV
                     MPPNGYFRFEAWVNQFYSLAPVGTGNGRRRIQ"
     gene            6701..7474
                     /gene="VP2"
     CDS             6701..7474
                     /gene="VP2"
                     /codon_start=1
                     /product="VP2"
                     /protein_id="AII73775.1"
                     /translation="MASAFFANLAGGVASNGISSLINAGANAINQKVEFDYNKQLQNA
                     SFSHDKEMLQAQIEATKRLQQEMIDIKQGVLTAAGFSPTDAARGSVGAPMTKLVDWSG
                     TRYWAPGAMRTTGYSGTFTHLPPVQSASYVNNQNGQFLKVDPSPPSSSGSSVSSVKTQ
                     STTLSGTSRVGSSSQSTLSTRPSTRTSDWVRSQNERLSPFMDGALQTTYVTPPSSRAS
                     SVSTVSTVPKEVLDSWTPMFNTHRQPLFAHLRRRGESQI"
ORIGIN      
        1 gtgaatgaag atggcgtcta acgacgctac cgctgccttt ggcagtcaaa actctgtcaa
       61 tgacagtaat aacgccaccc cttctaacaa agaagaggtc ggtgcattct ccaacatcaa
      121 agttggattc aagaaaatgc tgggtgccgt acccaagggc atcaaagcac ccagcagtgg
      181 tcaacattgc cccacagtta agatcgggcc taaaacatta acaatccccc ctgagccccc
      241 aaatggtgaa gacaccgtac agtttgatgc aaagtcagaa actataattg ggttgccaga
      301 cttgacaacg gtgcaaaatg aacatgaaaa caccccatac actgtccctc cattaagtga
      361 gagggagcac agaccggcca ctgaaccact tcctggcaca atattggaga tgtgggatgg
      421 tgagttttac cattactccg tgtacgtcag cgacggcaaa gctctggggg tccacaaacc
      481 accggcggct ataagcctcg cgacgataga gctcaccccc atatcacttt actggaggcc
      541 cgtttatacc cccaattact tggtctcccc ggacacatta aagggcctcg ctggtgagaa
      601 gttcccctac acggccttca gtaacaactg ttataacttc tgttgctggg tgctagagct
      661 caacgacacg tggcttaaca gaagatgcat ttccagaact accggcttct tcaaaccata
      721 ccagtcttgg aacaggaaac ctctcccaac cgttgatgat gggaagatca aaaaggtggc
      781 caacgcgatc ctctgcgcac tcggctcgct gttctcaaaa ccaatcaaag acctattagg
      841 caaactcaag ccattgaatc tactgcactt gctcgcgtct tgtgactgga cgtttgcggg
      901 tatagtggag acagtcatct tgatggcaga gcttttcaat gtcttctgga ccccgccaga
      961 tgtctctaat tttgtagcct ccctaatagg tgattttgaa ttgcaagggc ctgaggacct
     1021 ggctgtggag ctcgtccccg tggttatggg tggcataggg atggttctcg gtttcaccgc
     1081 tgagaagata ggccgcatgc tgtcgtccgc tgcatcaaca ctgcgggcgt gcaaagacct
     1141 agggaactat gcccttgaca tactcaaatt ggtcatgaag tggttcttcc caaagaagga
     1201 agagaaagct gagatggaaa ccttgagggc aatcgaagat gccgtcctgg atatggaagc
     1261 tatagggaac aaccacctca caacccttct caaggacaaa gacagcctca cggctttcat
     1321 gaagaccctg gatctggagg aggagaaggc taggaaactg tccactaaat catcttcacc
     1381 ggacatagtc ggcaccatca atgccatact ggctaggata gctgctgcta gatccctttt
     1441 acataaggcc aaagaggaga tgttcagcag gatcaggcca gtggtcgtta tgatctcagg
     1501 cagacctggc attggaaaaa cccacatggc gagacatttg gctaagagca tcgccaacac
     1561 catgagtggc gaccagagag tcgggctcgt tccgcgcaac ggtgtcgatc actgggatgc
     1621 ctacagggga gagagggtgg tcttgtggga tgactacggt atggggagcc ctgttaaaga
     1681 cgccctaaca ctacaagagc tggccgatac atgtccagtc actttaaatt gtgataggat
     1741 tgagaataag gggaagatgt ttgacagtga tgtcatcata atcacgacca acctagtcaa
     1801 ccccgcgccc ctcgactatg tgaacttcga ggcgtgttct aggagagttg acttcctggt
     1861 ctatgcagag tcaccagaaa ttgaaaaggt caagagagac ttccctggcc agcctgacat
     1921 gtggaaagat cattttaagc cagacttctc ccacatcaag ctgaccctag ccccccaggg
     1981 tgggtttgac aaaaatggca acaccccaca cggcaagggt accatgcggt ccctaaccca
     2041 ggggtccctg actgcgagag ttgcaggcct tgtccatgag aggagagatg agttccagct
     2101 ccaagggaat gacctccaaa catacaactt tgacaccaac agagtctccg cattcaggaa
     2161 attggctgca gataacaagt atgggatcat ggagacgatg agagtgggtg cggcactcaa
     2221 gaatgtgaag accctagaag accttaaaat tgcattgagg gatgtaaaat tcaatgagtg
     2281 tgaaataatt tacaagaact ctaagtaccg agtctcttcc aacggtaaag gttcagtttc
     2341 tgttgataaa gttgaggaca atgcatccca gactgtaaac gaggtacaat cagcacttct
     2401 caggctcagg caagcgaggg ccagatatta tatcagctgc ttccaagacc tcgtctacac
     2461 tctcatacag gttgccggag catcattcgt tgtcaacagg atctccagaa ggttctgctg
     2521 ggaaaggtgg gtcaaaccga ccgaaaccca ggaggtgaat gagcccgaaa aggaagtggc
     2581 acaaggcaga tgggaaattg agcccaagga cacagaacca gaaggcaaga agggtaagaa
     2641 caagaaagga aggggtaaga aacacacagc tttctctagc aaaggcctga gtgatgaaga
     2701 gtatgacgag ttcaagagaa tcagggaaga aaggaacgga aagtactcca ttgaggaata
     2761 cctgcaagac cgggaccgct attatgaaga agtggcagtt gcccgggcga cagaggagga
     2821 cttctgtgaa gaggaagagg ccaagataag acaaagaatt ttccgcccga caaagaaaca
     2881 gaggaaggag gaaaggggtg tgcttggctt agtcaccggc tcagacatca gaaagaggag
     2941 accagatgac ttccaaccaa aaggcaacct atgggcagat gacaccagga gtgtggacta
     3001 caatgagagg cttgattttg aagcgccccc gagtgtttgg tcaagaatag tcccattagg
     3061 cactggttgg ggattctggg tttcatccaa ccttctgatc acaacaacac acgtcctgcc
     3121 taaaggggtt aaggagctct ttggagttga aatcaaacaa atccaagttc ataagtctgg
     3181 agagttttgc aggtttagat tcccaagacc tatcaggcca gatgtcacag gactcgtact
     3241 ggaggaaggc gccccagaag gcactgtctg ttctatactc ataaaaagac ccacaggtga
     3301 gatgatcccc ttggcagtga ggatgggcac acatgcatcc atgaaaatac agggcaggac
     3361 cgttggtggc cagatgggaa tgcttctcac aggagcaaac gcgaagaaca tggacctcgg
     3421 caccggtcct ggtgactgcg gttgccccta catctacaaa cgcggcaacg acattgttgt
     3481 cgcgggtgtt cataccgcag cagcccgggg aggcaacact gttatatgtg ccacccaagg
     3541 gcaagatggg gaagcagtcc ttgagggaaa tgaggacctt ggcacctatt gtggcgcccc
     3601 aattctgggc cctggcaagg cgcctaaact cagcacgaag accaagtttt ggcgctcatc
     3661 accagatgcc ttgccacctg gtacatatga acctgcttac ctaggaggca aagaccctag
     3721 agtggaaaaa ggtccctccc tgcaacaagt catgagagac cagttgagac ccttcacaga
     3781 acccaggggc aaaccaccta gacctgcagt cttggaggaa gccaaaaaga cagtgatgaa
     3841 tgttctagaa caaaccattg accccgccaa gccatggtcc tattcgcagg catgtgcctc
     3901 actggacaaa accacctcta gtggcagtcc ccatcacgtt aagaaaaatg accactggaa
     3961 tggggagtcc ttcactggtc cacttgcaga tcaggcatct aaagccaacc tcatgtatga
     4021 gcaggctaaa cacgtgcagc ccgtgtatac ggccgcgctc aaagacgagc ttgttaagac
     4081 tgacaagatc tacaagaaga taaagaagag gctcctatgg gggtcggacc ttggcacaat
     4141 gatcaggtgc gccagggctt ttggtggtct catggacagc atgaaggcaa gttgtatagc
     4201 tcttccttgc agggtaggaa tgaacaagaa tgaagatggt cccattatat ttgacaaaca
     4261 ttctaagtac aggtaccatt atgatgctga ctattctagg tgggactcaa cccaacaaag
     4321 gagcattctt tctgccgcta tggaagtaat ggtgcggttc tctgctgaac cagaattggc
     4381 acaagtggtt gcagaggacc ttttggcacc tagccagctt gatgttggcg attttgtcat
     4441 ctcagtccag gagggtctgc catcaggagt cccatgtaca tcacaatgga attcaatagc
     4501 acactggatc ctaactttga gtgcaatggc agaagtgtca ggtctctcac cagatgttgt
     4561 ccaagctcac tcctgttttt cattttatgg ggacgatgag atcgtcagca ctgatatcaa
     4621 ccttgacccc atgaagttga cacagaaact cagggagtac ggtcttgtcc ccacccggcc
     4681 tgataaaact gaaggtcccc tcgtcataac tgaagacctc actggcctga cgttcctccg
     4741 taggtcgatt gctcgggacc cagctggctg gtttggaaag ctggaccaag actcaatcct
     4801 caggcagctg tactggacaa gggggcctaa ccatgagaac ccgtacgaaa gcatggttcc
     4861 tcactctcag cgggccacac aactcatggc ccttcttggt gaggcctcac tgcatggtcc
     4921 ccagttttac aagaaagtta gcaagatggt catcaatgag attaagagtg gtggtctgga
     4981 gttttatgtg cccagacaag aggccatgtt caggtggatg agattctctg acctcagcac
     5041 atgggagggc gatcgcaatc ttgctcccga aggtgtgaat gaagatggcg tcgaatgacg
     5101 cagctccatc taatgatggt gcagcaggcc tcgtaccaga gatcaacaat gaggtcatgc
     5161 cccttgagcc cgtggctggt gcatcgctgg cgacaccagt tgtcgggcaa caaaatataa
     5221 ttgatccctg gataagaaat aattttgtac aagctcctgc aggtgagttt acagtttccc
     5281 ctagaaattc ccctggtgaa attttgcttg atttggagtt ggggccagaa ctgaacccct
     5341 atctcgctca tctggcccgt atgtacaatg ggcacgctgg tggcatggaa gtgcaaattg
     5401 tgttggctgg gaacgcgttc acagctggca agatcatatt tgctgccatc cctccagggt
     5461 tcccatatga aaatttgtcg ccttcacaaa tcacaatgtg ccctcatgtt ataattgatg
     5521 ttagacaatt agaaccagtt ctactaccta tgccagatat tagaaacaac ttcttccatt
     5581 acaatcaggg caatgatcca aaattgagac tgatagctat gctctacacc cctttaaggg
     5641 ctaacaattc tggtgatgat gtgttcacag tttcttgtag ggtcctcact aaaccgtcac
     5701 ctgattttga gttcacattt ttggtccccc ctacggttga atctaagacc aaacagttca
     5761 cattgcccat cctcaaaata tcagagatga ccaactcaag attcccagtg ccagtggaaa
     5821 tgatgtacac agccaggaat gagaaccaag ttgtccagcc acagaatggt agggtcacac
     5881 ttgatggcga gctattaggt accacaccct tgttggctgt caacatctgc aaattcaagg
     5941 gggaggtcat agctaagaat ggagatgtga gatcctatag gatggatatg gaaattacca
     6001 acactgatgg caccccaatt gaccccacag aagacacacc tggtcccatt ggttcacctg
     6061 actttcaagg tatactcttt ggcgttgcca gccaacgcaa caagaatgag caaaaccctg
     6121 ccacgagagc ccatgaagcc aacattaaca ctggtgggga ccaatacgcc cccaaattgg
     6181 cccaagtgaa attcttctca gagtcccagg atttcgaggt gcaccagccc acagttttca
     6241 ccccagttgg tgtggcaggc gacacttccc accctttcag acagtgggtc ctgcctcgat
     6301 acggtggaca tctcaccaac aacacccact tggctccagc agtggccccc ttattcccag
     6361 gtgagcagat tctgttcttt agatcacaaa tacccagctc aggcggccat gaattgggtt
     6421 acatggactg ccttgtccca caagaatggg tccaacactt ctatcaagaa gctgccacag
     6481 ctcagtctga ggtggcactc ataaggttca tcaacccaga cactggcaga gtcctctttg
     6541 aggccaagct gcacaagcaa ggctttataa ctgtggctca cactggtgat aacccaattg
     6601 tcatgccacc aaatgggtac tttagatttg aagcctgggt taatcagttt tactcactcg
     6661 cccccgtggg aactgggaat gggcgcagga ggatccaata atggctagtg ctttctttgc
     6721 aaatttggca ggaggcgttg cctccaatgg aattagttca cttataaatg ctggggctaa
     6781 tgctatcaac caaaaggttg agtttgatta taataaacaa ctccaaaatg catccttctc
     6841 ccatgataag gaaatgctcc aagcccaaat tgaagccact aaacgtctgc aacaagagat
     6901 gattgacata aaacaagggg tgctgacagc tgcgggattc tctcctacag atgccgcgag
     6961 gggttctgtc ggcgcgccaa tgacaaaatt agttgattgg agtggcacta gatattgggc
     7021 gcctggtgcc atgaggacaa caggctattc agggactttt actcacttgc cccctgtgca
     7081 gtctgcttca tatgttaata atcaaaatgg acaatttctt aaagtagatc cttctcctcc
     7141 ttcttcgagt ggttcttctg tttcttctgt caaaacacaa tcaactaccc tctcaggcac
     7201 ttcaagggtg ggctcctcat ctcagtcaac cctgtcgacc aggccgagca caaggacatc
     7261 tgattgggtg cgcagccaga atgaaaggtt gagtcccttc atggatggag cgttgcaaac
     7321 aacgtatgta acgccaccat ccagtagggc atcaagtgtc agcacagtct cgaccgtgcc
     7381 gaaagaggtt ttggactcct ggacgcctat gtttaacact cacaggcagc cactcttcgc
     7441 ccacttgcgt aggcgagggg agtcacagat ttagtgaaaa gattggttag gaaagttgat
     7501 tagtttgttc ttcctttcta ctattccttt aattctttct ttt
//