Typing tool

Complete norovirus genomes

KJ196294  GII.12
 GII.P12

Length: 7,521 | 3 CDS

ORF1: 5..5104
ORF2: 5085..6692
ORF3: 6692..7471
LOCUS       KJ196294                7521 bp    RNA     linear   VRL 10-AUG-2014
DEFINITION  Norovirus GII/Hu/JP/2000/GII.P12_GII.12/Saitama/KU16, complete
            genome.
ACCESSION   KJ196294
VERSION     KJ196294.1
KEYWORDS    .
SOURCE      Norovirus GII/Hu/JP/2000/GII.P12_GII.12/Saitama/KU16
  ORGANISM  Norovirus GII/Hu/JP/2000/GII.P12_GII.12/Saitama/KU16
            Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
            Picornavirales; Caliciviridae; Norovirus.
REFERENCE   1  (bases 1 to 7521)
  AUTHORS   Park,Y., Wu,F.-T., Miki,M., Amano,K., Ozawa,K., Murakami,K.,
            Todaka,R., Shimoike,T., Oka,T., Uchida,K., Shinohara,M. and
            Katayama,K.
  TITLE     Direct Submission
  JOURNAL   Submitted (17-JAN-2014) Department of Virology II, National
            Institute of Infectious Diseases, 4-7-1 Gakuen Musashi-Murayama,
            Tokyo 208-0011, Japan
COMMENT     ##Assembly-Data-START##
            Sequencing Technology :: Sanger dideoxy sequencing
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..7521
                     /organism="Norovirus
                     GII/Hu/JP/2000/GII.P12_GII.12/Saitama/KU16"
                     /mol_type="genomic RNA"
                     /isolate="Saitama/KU16"
                     /host="Homo sapiens"
                     /db_xref="taxon:1529911"
                     /country="Japan"
                     /collection_date="2000"
                     /note="genotype: GII.P12_GII.12"
     CDS             5..5104
                     /codon_start=1
                     /product="polyprotein"
                     /protein_id="AII73770.1"
                     /translation="MKMASNDASAAAAANSNNDTAKSSSDGVLSSMAVTFKRALGARP
                     KQPPPREIPQRPPRPPTPELVKKIPPPPPNGEDEPVVSYSVKDGVSGLPELTTVRQPG
                     ETNTAFSVPPLNQRENRDAKEPLTGTILEMWDGEIYHYGLYVERGLVLGVHKPPAAIS
                     LAKVELTPLSLFWRPVYTPQYLISPDTLRRLHGESFPYTAFDNNCYAFCCWVLDLNDS
                     WLCRRMIQRTTGFFRPYQDWNRKPLPTMDDSKLKKVANIFLCALSSLFTRPIKDIIGK
                     LRPLNILNILASCDWTFAGIVESLILLAELFGVFWTPPDVSAMIAPLLGDYELQGPED
                     LAVELVPIVMGGIGLVLGFTKEKIGKMLSSAASTLRACKDLGAYGLEILKLVMKWFFP
                     KKEEANELAMVRSIEDAVLDLEAIENNHMTALLKDKDSLATYMRTLDLEEEKARKLST
                     KSASPDIVGTINALLARIAAARSLVHRAKEELSSRPRPVVVMISGRPGIGKTHLAREL
                     AKRIAASLTGDQRVGLIPRNGVDHWDAYKGERVVLWDDYGMSNPIHDALRLQELADTC
                     PLTLNCDRIENKGKVFDSDAIIITTNLANPAPLDYVNFEACSRRIDFLVYADAPEVEK
                     AKRDFPGQPDMWKNAFSPDFSHIKLMLAPQGGFDKNGNTPHGKGVMKTLTTGSLIARA
                     SGLLHERLDEYELQGPTPTTFNFDRNKVLAFRQLAAENKYGLMDTMRVGRQLKDVRTM
                     PELKQALKNISINSCQIVYGGCTYKLESDGKGDVKVDRVQNATVQTNNELAGALHHLR
                     CARIRYYVKCVQEALYSIIQIAGAAFVTTRIVKRMNIQDLWSKPQVEDTEETASKDGC
                     PKPKDDDEFVVSSDDIKTEGKKGKNKSGRGKKHTAFSSKGLSDEEYDEYKRIREERNG
                     KYSIEEYLQDRDKYYEEVAIARATEEDFCEEEEAKIRQRIFRPTRKQRKEERASLGLV
                     TGSEIRKRNPDDFKPKGKLWADDDRSVDYNERLNFEAPPSIWSRIVNFGSGWGFWVSP
                     SLFITSTHVIPQGAQEFFGVSIKQIQIHKSGEFCRLRFPKPIRTDVTGMILEEGAPEG
                     TVVTLLIKRPTGELMPLAARMGTHATMKIQGRTVGGQMGMLLTGSNAKSMDLGTTPGD
                     CGCPYIYKRGNDYVVIGVHTAAARGGNTVICATQGSEGEATLEGGDNKGTYCGAPILG
                     PGSAPKLSTKTKFWRSSTAPLPPGTYEPAYLGGKDPRVKGGPSLQQVMRDQLKPFTEP
                     RGKPPKPSVLEAAKKTIINVLEQTIDPPQKWSFAQACASLDKTTSSGHPHHMRKNDCW
                     NGESFTGKLADQASKANLMFEEGKNMTPVYTGALKDELVKTDKIYGKIKKRLLWGSDL
                     ATMVRCARAFGGLMEELKAHCVTLPVRVGMNMNEDGPIIFERHSRYKYHYDADYSRWD
                     STQQRAVLAAALEIMVKFSPEPHLAQKVAEDLLSPSVMDVGDFKISINEGLPSGVPCT
                     SQWNSIAHWLLTLCALSEVTNLSPDIIQANSLFSFYGDDEIVSTDIKLDPEKLTAKLK
                     EYGLKPTRPDKTEGPLVISEDLNGLTFLRRTVTRDPAGWFGKLEQSSILRQMYWTRGP
                     NHEDPSETMIPHSQRPIQLMSLLGEAALHGPAFYSKISKLVIAELKEGGMDFYVPRQE
                     PMFRWMRFSDLSTWEGDRNLAPSFVNEDGVE"
     gene            5085..6692
                     /gene="VP1"
     CDS             5085..6692
                     /gene="VP1"
                     /codon_start=1
                     /product="VP1"
                     /protein_id="AII73771.1"
                     /translation="MKMASSDAAPSNDGAAGLVPEANNETMALEPVAGASIAAPLTGQ
                     NNIIDPWIRLNFVQAPNGEFTVSPRNSPGEVLLNLELGPELNPYLAHLSRMYNGYAGG
                     VEVQVLLAGNAFTAGILVFAAVPPHFPLENISPGQITMFPHVIIDVRTLEPVLLPLPD
                     VRNNFFHYNQQNEPRMRLVAMLYTPLRSNGSGDDVFTVSCRVLTRPSPDFDFNYLVPP
                     TVESKTKPFTLPILTIGELTNSRFPVPIDELYTSPNESLVVQPQNGRCALDGELQGTT
                     QLLPTAICSFRGRINQKVSGENHVWNMQVTNINGTPFDPTEDVPAPLGTPDFSGKLFG
                     VLSQRDHDNACRSHDAVIATNSAKFTPKLGAIQIGTWEQDDVHINQPTKFTPVGLFEN
                     EGFNQWTLPNYSGALTLNMGLAPPVAPTFPGEQILFFRSHIPLKGGVADPVIDCLLPQ
                     EWIQHLYQESAPSQSDVALIRFTNPDTGRVLFEAKLHRSGYITVANTGSRPIVVPANG
                     YFRFDSWVNQFYSLAPMGTGNGRRRVQ"
     gene            6692..7471
                     /gene="VP2"
     CDS             6692..7471
                     /gene="VP2"
                     /codon_start=1
                     /product="VP2"
                     /protein_id="AII73772.1"
                     /translation="MAGAFIAGLAGDIVTNGIGSLVNAGANAINQKVDFENNKQLQQA
                     SFNHDKEMLQAQVQATKQLQADMIAIRQGVLTAGGFSPTDAARGAVNAPMTQVLDWNG
                     TRHWAPGATKTTAFSGGFTNASHARTVDLTKKTPATPAPASVSRPSSIASTVSTRSTL
                     VSGSSNPSSSARSSSSVSSQPTSSSSRTSEWVRSQNRALEPYMRGALHTAYVTPPSSR
                     ASSNGTVSTVPKEVLDSWTSAFNTRRQPLFAHLRRRGESQV"
ORIGIN      
        1 gtgaatgaag atggcgtcta acgacgcttc cgctgccgct gctgctaaca gcaacaacga
       61 caccgcaaaa tcttcaagtg acggagtgct ttctagcatg gctgtcactt ttaaacgagc
      121 cctcggggca cggcctaaac agcctccccc gagggaaata ccacaaaggc ccccacgacc
      181 acccacccca gaactggtca aaaagatccc tcctcctcca cctaacgggg aggatgaacc
      241 agtggtttct tacagcgtca aagatggcgt ttccggcttg cctgagctca ccactgtcag
      301 gcagccgggt gaaaccaaca cggcgttcag tgttccccca ctcaaccaaa gggagaatag
      361 ggacgccaag gagccattaa ctggaacaat cctggaaatg tgggacgggg agatctacca
      421 ttacggcctg tatgtggaac gaggtcttgt acttggtgtg cacaaaccac cggctgccat
      481 cagcctcgcc aaggttgaac taacaccact ttctctgttc tggagaccag tgtatacacc
      541 acagtatctc atctctccgg acactctcag gagactgcac ggagagtcgt tcccctacac
      601 agcctttgac aacaactgct atgccttctg ttgttgggtc ctggacctaa acgactcgtg
      661 gttgtgcagg agaatgatcc agaggacaac tggtttcttc aggccttacc aagactggaa
      721 taggaaaccc cttcccacca tggatgactc caagttgaag aaggtagcta acatattctt
      781 gtgtgcgcta tcttcgctat tcactaggcc catcaaagac ataataggaa agttgaggcc
      841 tcttaacatc cttaacatct tggcctcatg tgattggact tttgcaggca tagtggaatc
      901 tttgatcctc ttggcagagc tctttggagt tttctggaca cccccagatg tgtctgcgat
      961 gatcgcccct ttactaggtg actacgagct gcaggggccc gaggaccttg cagtggaact
     1021 cgttccaata gtgatggggg ggattggttt ggtgctagga ttcaccaaag agaaaatcgg
     1081 gaaaatgttg tcatctgctg catccacctt aagagcttgt aaagaccttg gtgcatacgg
     1141 actggaaatc ttaaaattgg tcatgaagtg gttcttccca aagaaagagg aagcaaatga
     1201 gctggctatg gtgaggtcca tcgaggatgc ggtgctggac ctcgaggcaa ttgagaacaa
     1261 tcacatgact gccctcctca aagacaaaga cagcctggca acctatatga gaactcttga
     1321 cctcgaggag gagaaagcta ggaagctctc aaccaagtct gcttcacctg atatcgtggg
     1381 cacaatcaac gctctcctgg cgagaatcgc cgctgcacgt tccctggtgc atcgggcgaa
     1441 agaggaactc tccagcagac caagacctgt tgttgttatg atatcaggca ggccagggat
     1501 agggaaaacc caccttgcca gggaattggc caagagaatc gcagcttctc tcacagggga
     1561 ccagcgtgtg ggtctcatcc ctcgcaatgg tgttgatcac tgggacgcat ataaaggaga
     1621 aagagtcgtc ctatgggacg attatggaat gagtaatccc atccacgacg ccctcaggtt
     1681 acaagaactt gctgacacct gccccctcac gctaaattgt gacaggattg agaacaaagg
     1741 aaaggtcttt gacagtgatg ccataatcat caccactaat ctggccaacc cagcaccact
     1801 ggactatgtc aattttgaag catgctcgag gcgcatcgac ttcctcgtgt atgcagatgc
     1861 ccctgaggtc gagaaggcaa agcgcgattt cccaggtcaa cctgacatgt ggaagaacgc
     1921 tttcagtcct gacttctcgc acataaaact gatgctggct ccgcagggtg gcttcgacaa
     1981 gaacggaaac accccacatg ggaaaggcgt catgaaaacc ctcaccactg gttccctcat
     2041 cgctcgagca tcggggctac tccatgagag gttagatgag tacgagctgc agggcccaac
     2101 ccccaccacc ttcaactttg accgcaacaa ggtgcttgcg ttcagacagc ttgctgccga
     2161 aaacaagtac gggttgatgg acacaatgag agttggaaga cagctcaagg atgtcaggac
     2221 catgccagag ctcaaacaag cactcaagaa tatctcaatt aatagttgtc agatagtgta
     2281 tggtggctgc acctataagc ttgagtctga tggcaagggt gatgtgaaag ttgacagagt
     2341 tcagaacgcc actgtacaga ccaacaatga acttgccggt gccctacatc atcttaggtg
     2401 tgccagaatt agatattatg tcaagtgtgt tcaggaggcc ctatattcca tcatccaaat
     2461 tgctggagct gcatttgtaa ccacgcgcat tgtcaagcgc atgaacatac aagacctttg
     2521 gtccaagcca caggtggaag atacagagga gactgctagc aaggatgggt gcccaaaacc
     2581 caaggatgat gacgagttcg ttgtctcatc cgacgacatc aaaaccgagg gcaagaaagg
     2641 gaagaacaag tctggccgtg gtaagaagca cacagcattc tcaagcaaag gtctcagtga
     2701 tgaagagtac gatgagtaca aaagaatcag agaagaaaga aacggcaaat actccataga
     2761 ggaatacctc caggacagag acaagtatta tgaggaggtg gccatcgcca gggcgaccga
     2821 agaggacttc tgtgaagaag aagaggccaa gatccgacaa aggattttca ggccaacaag
     2881 gaaacaacgc aaagaggaga gggcctctct cggtttggtc acaggctctg aaatcaggaa
     2941 gaggaaccca gacgacttca agcctaaagg aaagctgtgg gctgatgacg acaggagtgt
     3001 tgactacaat gagagactca attttgaagc cccaccaagc atctggtcga ggatagtcaa
     3061 ctttggttca ggttggggct tttgggtttc ccccagcctg ttcataacat caactcatgt
     3121 cataccccag ggcgcacagg agttctttgg ggtttccatc aaacaaattc agatacacaa
     3181 atcgggtgaa ttctgtcgct tgaggtttcc aaaaccaatc agaactgacg tgacaggcat
     3241 gatcctagaa gaaggtgcgc ccgaagggac cgtggtcaca ctactcatca agaggccaac
     3301 tggagaactc atgcccttgg cagccagaat gggaacccat gcaaccatga agattcaagg
     3361 gcgcactgtt gggggtcaga tgggcatgct cctaacagga tccaacgcca agagtatgga
     3421 tctgggcacc acaccaggtg actgtggctg tccctacatt tacaagaggg ggaatgacta
     3481 cgtagtcatt ggagtccaca cggctgctgc ccgtggagga aacactgtca tatgtgccac
     3541 ccaggggagc gagggagaag ccacacttga aggcggtgac aacaagggaa cctactgtgg
     3601 tgcaccaatc ttaggtccag gaagtgcccc aaagctcagc accaagacta agttctggag
     3661 atcatccaca gcaccactcc cacctggtac ctatgagcca gcctaccttg gcggcaagga
     3721 ccccagagtc aagggtggcc cttcattgca acaagttatg agggaccagc tgaaaccatt
     3781 cactgagccc aggggtaaac caccaaaacc aagtgtgtta gaggctgcca agaaaaccat
     3841 catcaatgtt cttgaacaaa caattgatcc acctcaaaaa tggtcattcg cgcaggcatg
     3901 cgcatccctc gacaagacca cttccagtgg tcacccgcac cacatgcgga aaaacgactg
     3961 ctggaatggg gagtccttta caggcaaatt ggcagaccag gcttccaagg ccaacctgat
     4021 gttcgaagag ggaaagaaca tgaccccagt ctacacaggt gcgcttaagg acgagctggt
     4081 caagactgac aaaatttatg gcaagatcaa aaagaggctt ctctggggct cggatctggc
     4141 gaccatggtc cggtgcgctc gagcgttcgg gggcctgatg gaggaactca aagcacattg
     4201 tgtcacacta cccgtcagag taggtatgaa catgaatgag gatggtccta tcatctttga
     4261 gagacactcc agatacaaat accattatga tgctgattac tcccggtggg actcaacaca
     4321 acaaagagcc gtgttagcag cagccttaga aatcatggtt aagttctccc cagaaccgca
     4381 tctggcccaa aaggttgcag aagaccttct ctctcccagc gtgatggacg taggtgactt
     4441 caaaatatca atcaatgagg gcctcccctc cggggtgccc tgcacctccc aatggaattc
     4501 catcgcccac tggctcctca ctctctgtgc actttctgag gttacaaacc tgtcccctga
     4561 catcatccag gccaactctc tcttttcctt ctacggtgat gatgagattg tgagcacaga
     4621 cataaagttg gatccagaga agttgacagc aaaacttaag gaatacgggt tgaaaccgac
     4681 ccgccctgat aagactgagg gaccccttgt tatctctgag gacctgaatg gcctaacctt
     4741 cctgcggagg actgtgaccc gcgacccagc tggctggttt ggaaagttgg aacagagttc
     4801 aatactcagg caaatgtatt ggactagggg ccccaaccat gaagacccat ctgaaacaat
     4861 gataccacac tcccaaagac ccatacaatt gatgtctttg ctgggcgagg ctgcactcca
     4921 cggtccagca ttctacagca aaatcagcaa gctggtcatt gcagagctga aggaaggtgg
     4981 catggatttt tacgtgccca gacaagagcc aatgttcaga tggatgaggt tctcagatct
     5041 gagcacgtgg gagggcgatc gcaatctggc tcccagtttt gtgaatgaag atggcgtcga
     5101 gtgacgccgc tccatctaat gatggtgcag ccggtcttgt accagaggct aacaatgaga
     5161 ccatggcact tgaaccggtg gctggggctt caatagccgc cccactcacc ggtcaaaaca
     5221 atattataga cccctggatt agattaaatt ttgtgcaggc tcccaatggg gagttcacgg
     5281 tttcaccccg caactcgccc ggggaagtcc tattaaactt ggaattaggc cccgaactaa
     5341 atccatacct agcacacctt tctagaatgt ataatggtta tgcaggtggg gttgaggtgc
     5401 aagtactact ggctgggaat gcgttcacag ctggaatatt ggtgtttgcc gcagttcccc
     5461 ctcattttcc actagaaaac ataagccctg gtcagataac tatgttccct catgtaatta
     5521 ttgatgttag gactttagaa ccagttttgt tgccccttcc agatgttagg aataatttct
     5581 ttcattataa tcaacagaat gaaccgagga tgagactcgt ggcaatgctt tatactcccc
     5641 ttagatctaa tggttctggt gatgatgtat ttactgtctc ttgcagggtg ctcacccgac
     5701 cttcccctga ttttgatttt aattacttgg tcccccctac cgttgaatct aaaactaaac
     5761 ccttcacact ccctatcttg actatagggg agttgaccaa ctccaggttc cctgtgccca
     5821 tagatgagct ctacaccagt cccaatgaga gtctggtggt gcaaccccag aatgggagat
     5881 gcgcgctaga tggggagctg cagggcacga cccagctcct ccccacggcg atttgctcat
     5941 tcaggggccg gatcaatcag aaggtgagtg gagaaaacca tgtttggaat atgcaggtca
     6001 ccaacatcaa cgggacccct tttgatccaa cagaggatgt cccggctcct ctaggcaccc
     6061 cagatttctc tggcaagctc tttggtgtac taagccagag ggaccatgat aatgcctgta
     6121 gaagtcatga tgcagtaatt gcaaccaact ctgccaaatt tactccaaaa ttgggcgcta
     6181 tacaaattgg cacatgggaa caagacgatg tgcacatcaa ccaacctact aagtttactc
     6241 cagttggctt gtttgaaaat gaaggtttca accagtggac actccccaat tactcaggag
     6301 ccttaacact taatatgggg ttggcccctc ctgtggcccc caccttccct ggtgaacaaa
     6361 tccttttctt tagatcccac attcctctta aaggaggtgt ggcggaccca gttattgatt
     6421 gtctcttgcc ccaagagtgg atccaacatc tttaccaaga gtcggcccct tcacaatcag
     6481 atgtggcatt gattaggttt acaaatccag acacaggacg tgttctattt gaagcaaaat
     6541 tacacaggag tggttacatt acagtggcca atactggtag cagaccaatt gtggtgccag
     6601 ctaatggtta cttcaggttt gactcttggg ttaatcaatt ctattctctc gcccccatgg
     6661 gaactggaaa tgggcgcagg agggtgcaat aatggctgga gcttttatag cagggcttgc
     6721 tggtgacata gtcaccaatg gcattggctc acttgtgaac gctggggcta atgcaataaa
     6781 tcaaaaagta gactttgaaa ataacaagca actacagcag gcttctttca accatgataa
     6841 agagatgctg caagctcaag tccaggccac taaacagctg caggctgata tgattgcaat
     6901 cagacaaggg gtgttgaccg cgggcggctt ctcccctact gacgcagcaa gaggggcagt
     6961 taatgcacct atgactcagg tcttagactg gaatgggacc aggcattggg cccccggagc
     7021 cacgaaaacc actgctttct ccggtggatt caccaatgct tctcacgcca gaactgtcga
     7081 cctgaccaag aagacaccag ccacaccagc ccctgcgtct gtttctagac ctagctctat
     7141 tgcctctaca gtctccaccc gctcaacctt ggttagcggg tcttctaacc cttcttcttc
     7201 agctaggagt tcttctagtg tttcttctca acccacctcc tcctcttctc ggaccagtga
     7261 gtgggtgcgc agccaaaaca gggcactgga gccttacatg aggggagcgc tacacacagc
     7321 ctatgtgacg cctccctcta gtagagcttc tagtaatggc acagtctcaa ccgtgccaaa
     7381 agaggttttg gactcctgga catctgcatt taacacccgc agacaaccgc tattcgctca
     7441 tctccgtcgg agaggggagt cacaagttta gtgaaaagat gatctttatt ttctttcctt
     7501 tgaagattct ttttgtcttt t
//