Typing tool

Complete norovirus genomes

KJ196288  GII.5
 GII.P5

Length: 7,512 | 3 CDS

ORF1: 5..5098
ORF2: 5079..6701
ORF3: 6701..7477
LOCUS       KJ196288                7512 bp    RNA     linear   VRL 10-AUG-2014
DEFINITION  Norovirus GII/Hu/JP/2002/GII.P5_GII.5/Saitama/T52, complete genome.
ACCESSION   KJ196288
VERSION     KJ196288.1
KEYWORDS    .
SOURCE      Norovirus GII/Hu/JP/2002/GII.P5_GII.5/Saitama/T52
  ORGANISM  Norovirus GII/Hu/JP/2002/GII.P5_GII.5/Saitama/T52
            Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
            Picornavirales; Caliciviridae; Norovirus.
REFERENCE   1  (bases 1 to 7512)
  AUTHORS   Park,Y., Wu,F.-T., Miki,M., Amano,K., Ozawa,K., Murakami,K.,
            Todaka,R., Shimoike,T., Oka,T., Uchida,K., Shinohara,M. and
            Katayama,K.
  TITLE     Direct Submission
  JOURNAL   Submitted (17-JAN-2014) Department of Virology II, National
            Institute of Infectious Diseases, 4-7-1 Gakuen Musashi-Murayama,
            Tokyo 208-0011, Japan
COMMENT     ##Assembly-Data-START##
            Sequencing Technology :: Sanger dideoxy sequencing
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..7512
                     /organism="Norovirus
                     GII/Hu/JP/2002/GII.P5_GII.5/Saitama/T52"
                     /mol_type="genomic RNA"
                     /isolate="Saitama/T52"
                     /host="Homo sapiens"
                     /db_xref="taxon:1529917"
                     /country="Japan"
                     /collection_date="2002"
                     /note="genotype: GII.P5_GII.5"
     CDS             5..5098
                     /codon_start=1
                     /product="polyprotein"
                     /protein_id="AII73752.1"
                     /translation="MKMASNDASVAVACNNNNDKEKSSGEGLFTNMSSTLKKALGARP
                     KQPVPRDNSQKPPRPPTPELIKNMPPPPPNGEDEPTVRYEVTKGVSGLPELTTVTQPD
                     STNTGFSVPPLSQRENKEAKEPLTGAILEMWDGEIYHYGLYVEKGLVLGVHKPPAAIS
                     MAKVEMTPLSLYWRVVYTPQYLISPDTLRRLDGEAFPYTAFDNNCYAFCCWVLDLNDS
                     WLSRRMVQRTTGFFRPYQEWNRKPLPTMDDSKIKKVANIFLCSLSTLFTRPIKDIIGK
                     IRPLNILNILATCDWTFAGIVESLILFAELFGVFWTPPDVSAMIAPLLGDYELQGPED
                     IAVELVPVVMGGIGLVLGFTKEKIGKMLSSAASTLRACKDLGAYGLEILKLVMKWFFP
                     KKEEASELAMVRAIEDAVLDLEAIENNHMTALLKDKDSLATYMRTLDLEEEKARKLST
                     KSASPDIVGTINALLARIAAARSLVHRAKEELSSRIRPVVVMMSGRPGIGKTHLAREV
                     AKKVASTLTGDQRVGLIPRNGVDHWDAYKGERVVLWDDYGMSNPIHDALRLQELADTC
                     PLTLNCDRIENKGKVFDSDVIIITTNLANPAPLDYVNFEACSRRIDFLVYAEAPEVEK
                     AKRDFPGQPDMWKDAFKSDFSHIKLQLAPQGGFDKNGNTPHGKGVMKTLTTGSLIARA
                     SGLLHERMDEFELQGPAITTFNFDRNKIAAFRQLAAENKYGIMDTMRIGNQLKGVKTM
                     EELKQAIKNVSIKKCQIIYNGSTFSLESDGKGKVLVEKIKSATIQTSNELAGALRHLR
                     SARIRYYVKCVQEAIYSILQIAGAAFVTTRIARRMNIQELWAKPPIDQGESEPKEENP
                     KLEDDEFIISSKDIKEEGKKGKNKTGRGKKHTAFSSKGLSDEEYDEYKRIREERNGKY
                     SIEEYLQDRDRYYEELAIAKATEEDFCEEEEIKIRQRIFRPTRKQRKEERATLGLVTG
                     SEIRKRNPDDFKPKGKLWADDNRSVDYNEKLDFEAPPSIWSRIVSFGSGWGFWVSPSL
                     FITSTHVIPSGVTEVFGVPVKQVQIHKSGEFCRFRFPKPIRTDVTGMILEEGAPEGTV
                     ATILIKRPTGELMPLAARMGTHATMKIQGRMVGGQMGMLLTGSNAKGMDLGTTPGDCG
                     CPYIYKRGNDYIVIGVHTAAARGGNTVICATQGSEGEATLEGGDDKGTYCGAPILGPG
                     GAPKLSTKTKFWRSSNTPLPPGTYEPAYLGGRDPRVKGGPSLQQVMRDQLKPFTEPRG
                     KPPKPSVLEAAKQTIINVLEQTLDPPQKWTYAQACASLDKTTSSGHPHHTRKNEFWNG
                     ETFTGKLADQASKANLMFEEGKHMTPVYTAALKDELVKTDKIYGKIKKRLLWGSDLST
                     MVRCARAFGGLMEEMKAHCISLPVRVGMNMNEDGPIIFEKHSRYKYHYDADYSRWDST
                     QQRAVLAAAMEIMVRFSAEPQLSQKVAEDLLAPSVVDVGDFKISINEGLPSGVPCTSQ
                     WNSITHWLLTLCALSETTNLSPDIIQANSMFSFYGDDEIVSTDIKLDPEKLTTKLREY
                     GLKPTRPDKTEGPLIISEDLDGLTFLRRTVSRDPAGWFGKLDQSSILRQMYWTRGPNH
                     EDPNETMIPHSQRPIQLMALLGEASLHGPSFYSKISKLVITELKEGGMDFYVPRQEPM
                     FRWMRFSDLSTWEGDRNLAPSFVNEDGVE"
     gene            5079..6701
                     /gene="VP1"
     CDS             5079..6701
                     /gene="VP1"
                     /codon_start=1
                     /product="VP1"
                     /protein_id="AII73753.1"
                     /translation="MKMASNDATPSNDGAAGLVPESNNEAMALEPVVGASLAAPVTGQ
                     TNIIDPWIRTNFVQAPNGEFTVSPRNSPGEILVNLELGPELNPYLAHLARMYNGYAGG
                     MEVQVMLAGNAFTAGKIIFAAVPPYFPVENLSPSQITMFPHVIIDVRTLEPVLLPMPD
                     VRSTLFHFNQKDEPKMRLVAMLYTPLRSNGSGDDVFTVSCRILTRPSPEFDFTYLVPP
                     TVESKTKPFTLPVLTLGELSNSRFPLSIDEMVTSPNESIVVQPQNGRVTLDGELLGTT
                     QLQACNICSIRGKVTGQVPNEQHMWNLQITNLNGTQFDPTDDVPAPLGVPDFAGEVFG
                     VLSQRNRGESNPANRAHDAVVATYSDKYTPKLGLVQIGTWNTNDVENQPTKFTPIGLN
                     EVANGHRFEQWTLPRYSGALTLNMNLAPAVAPLFPGERLLFFRSYVPLKGGFGNPAID
                     CLVPQEWVQHFYQESAPSLGDVALVRYVNPDTGRVLFEAKLHKGGFLTVSSTSTGPVV
                     VPANGYFRFDSWVNQFYSLAPMGTGNGRRRFQ"
     gene            6701..7477
                     /gene="VP2"
     CDS             6701..7477
                     /gene="VP2"
                     /codon_start=1
                     /product="VP2"
                     /protein_id="AII73754.1"
                     /translation="MAGAFIAGLAGDVLSNGLGSLINAGANAINQRAEFDFNRQLQQN
                     SFNHDKEMLNAQIQATKQLQADMIAIKQGVLAAGGFSPTDAARGAVNAPMTQALDWSG
                     TRYWAPGSMKTTSYSGKFVSMNPVRQVEFPQPKKSAAIPSSASSVSSGRTNLTNSTQS
                     TVVSTSSLPPPRGSSAPSTLSRATTRTSNWVEEQNRNLEPYMRGALQTTFVTPPSSRA
                     SSNGTVSTVPKGVLDSWTPAFNTRRQPLFAYLRKKGESQV"
ORIGIN      
        1 gtgaatgaag atggcgtcta acgacgcttc cgttgccgtt gcttgcaaca acaacaacga
       61 caaggaaaaa tcttcgggtg aaggcttgtt tacaaacatg tcttctaccc taaagaaagc
      121 cctcggggca cggcctaaac agcctgtccc gagggacaac tcacaaaaac caccaaggcc
      181 tcccacgcct gagctgatta aaaatatgcc cccccccccg cctaacggtg aagacgagcc
      241 aaccgttagg tacgaagtta caaaaggggt ctccggccta cctgagctca cgacagtcac
      301 acaaccagac tcaaccaaca cggggtttag tgtccccccg ttgagtcaaa gagagaacaa
      361 ggaagctaag gagccactga ccggggcaat actggaaatg tgggatggag agatttacca
      421 ctatggtttg tatgtggaga aaggtctcgt gctgggtgtg cacaaaccac ccgcagccat
      481 aagcatggcg aaggtggaaa tgacaccgct ttcgttatac tggcgtgtgg tgtacacccc
      541 ccagtacctc atttcccctg acacgctcag gagactcgac ggagaggcgt ttccatatac
      601 cgcatttgac aacaattgtt acgccttttg ctgctgggtg ttagacctta atgattcatg
      661 gcttagtagg agaatggtgc aaagaacaac aggcttcttc aggccctacc aggagtggaa
      721 cagaaaacct ttgcccacca tggatgattc caagatcaag aaagtggcga acatattttt
      781 atgctcttta tccacactat tcactaggcc tattaaagac attattggga aaattagacc
      841 attaaatatt ttaaacattc tggcaacatg tgattggacg ttcgccggga ttgtggagtc
      901 gctaatcttg tttgctgagc tctttggagt gttctggaca cccccagatg tgtctgcaat
      961 gattgccccc ctacttggtg actacgagtt acaaggacct gaagacatcg ctgtcgaact
     1021 cgtacccgtg gtaatgggag gaatcggttt ggtgttaggc ttcaccaaag agaagatagg
     1081 caagatgttg tcttcagcag catcaacact cagagcctgt aaagaccttg gggcctatgg
     1141 attggaaata ctcaagctgg tcatgaaatg gttcttcccc aagaaagaag aagctagtga
     1201 gctggccatg gtgagggcta tagaagatgc cgtgttggac cttgaggcaa tagaaaacaa
     1261 ccacatgaca gcactgctca aagacaaaga cagtctcgca acctacatga gaacactgga
     1321 ccttgaggaa gaaaaagcca ggaagttgtc caccaagtcc gcatcccctg acatagttgg
     1381 gacaattaac gccctgttag cccggatagc ggcagccagg tcactggttc acagggccaa
     1441 ggaggaactg tctagtagaa ttaggccagt tgttgtcatg atgtctggta gaccaggtat
     1501 agggaagaca cacctggcca gggaagtggc aaagaaggtg gcatctaccc tcacagggga
     1561 ccagagggtt ggactcatac caaggaatgg tgtggaccat tgggatgcat acaagggcga
     1621 aagggtcgtg ctatgggacg actatggcat gagtaacccc attcatgatg ccctgcgcct
     1681 gcaggagctg gccgacacat gtcccttaac attaaattgt gacagaattg agaataaagg
     1741 aaaggtgttt gatagtgatg ttataatcat tacaacgaac cttgcaaacc cagcccctct
     1801 tgattatgtc aactttgagg cttgctccag gcgcattgac ttcctggttt atgccgaagc
     1861 accggaagta gaaaaggcaa agcgagactt ccccggccag ccagacatgt ggaaagatgc
     1921 ttttaaatca gatttctcac atattaaatt acaacttgca ccccagggag gcttcgacaa
     1981 aaatgggaac accccacatg gaaaaggtgt gatgaaaaca ctcaccactg gctctctgat
     2041 cgctagggcg tcgggcctcc tacacgaaag aatggacgag ttcgaactcc agggcccagc
     2101 aatcaccact ttcaacttcg accgtaacaa aattgccgcg ttcagacaat tggctgcgga
     2161 aaataaatat ggaataatgg acaccatgcg gattggcaac caactgaaag gggtgaaaac
     2221 catggaagaa cttaaacagg caattaagaa tgtgtccatc aaaaagtgcc aaataatcta
     2281 taatggctct acattcagtc ttgagtctga tggcaaaggc aaggttttgg tagagaagat
     2341 caaaagtgcc actattcaaa ccagtaatga actggctggg gctctgcgcc acctcaggag
     2401 tgccagaata aggtattatg tgaaatgtgt gcaagaagct atctactcta ttcttcagat
     2461 tgctggtgcc gcattcgtca ccacgcgcat tgcacgccgc atgaacatac aagaactctg
     2521 ggcaaaacca ccaatagacc agggtgaatc agagcccaaa gaagagaacc ctaagttgga
     2581 ggacgatgaa ttcatcatat catctaagga catcaaggaa gaaggcaaga agggcaagaa
     2641 caaaactggc cgtggcaaga aacacaccgc attctccagc aagggtctaa gtgatgagga
     2701 gtatgatgag tacaagagga taagagagga aagaaatggt aagtactcta ttgaagaata
     2761 cctccaggac agagacagat actacgagga gcttgccatt gctaaggcta ctgaagagga
     2821 cttctgtgag gaagaggaga tcaaaattcg ccagaggatc tttcgcccca caagaaaaca
     2881 gagaaaggaa gaaagggcta cgttgggact ggtgactggt tcagaaatca ggaagaggaa
     2941 ccctgatgat tttaagccca aaggaaagct gtgggccgac gacaacagaa gtgtcgatta
     3001 caacgaaaaa ctggatttcg aggctccccc gagcatctgg tctagaatcg tcagttttgg
     3061 ctcaggttgg ggtttctggg tgtcaccaag cctgtttata acatcaactc acgtgatccc
     3121 ttctggtgta acagaggtat tcggcgtgcc cgttaagcaa gtccaaattc acaagtcagg
     3181 cgaattttgc cgtttcagat ttccaaaacc aatcaggaca gatgtgacag gaatgatcct
     3241 agaagaggga gccccagaag gcaccgtggc aaccatcctc atcaaacgcc ccaccggcga
     3301 actcatgcca cttgctgcca gaatggggac gcacgcgacc atgaaaattc agggacgcat
     3361 ggtcggtgga cagatgggca tgttgctcac cggttcgaac gccaaaggca tggatttagg
     3421 gacaactccc ggagactgcg gctgcccata tatttacaag agaggtaacg attacatcgt
     3481 tatcggagtc cacacagcag ccgcccgcgg agggaacact gtcatctgtg ctacacaagg
     3541 gagtgaaggt gaagcaacac ttgagggtgg agatgacaaa ggaacatatt gtggggcacc
     3601 catcctcggt cctggtgggg caccaaaatt gagcaccaag accaagttct ggaggtcatc
     3661 aaacacaccc ctcccaccgg gaacatatga acctgcttac cttgggggcc gcgacccacg
     3721 tgttaagggc gggccctccc tgcaacaagt catgagggac caactgaaac cattcaccga
     3781 acccaggggc aaacctccaa agcctagtgt cctagaggca gccaaacaaa ccatcattaa
     3841 cgtcctggaa cagaccctgg atcccccaca aaagtggact tacgcacaag cgtgtgcgtc
     3901 acttgacaaa accacctcca gcgggcaccc ccaccacacc cgaaagaatg agttttggaa
     3961 cggagagact ttcaccggca aactggcaga tcaagcgtca aaagcgaacc taatgtttga
     4021 ggaagggaaa cacatgacac cagtgtacac ggcagccctt aaggatgagc tagtcaagac
     4081 agacaagatt tatgggaaga tcaagaaaag gttgctgtgg ggttctgatc tgtccaccat
     4141 ggttcggtgt gcaagagctt ttggggggct catggaggag atgaaggctc actgcatatc
     4201 actcccagtc cgggttggca tgaatatgaa tgaagatggt ccaataatat ttgagaagca
     4261 ttccaggtat aaataccatt atgatgcaga ttactcccga tgggactcca cccaacagag
     4321 agctgtgtta gctgcagcta tggaaataat ggttagattc tctgctgaac cacaactatc
     4381 acaaaaagtg gctgaagatt tgttggcccc cagtgtggtg gacgttggag actttaaaat
     4441 ttcaataaat gaagggcttc catccggtgt cccgtgcacc tcacagtgga attccatcac
     4501 acattggctt ctaactctct gtgctctgtc tgaaaccacc aacctgtctc ctgacatcat
     4561 acaggcaaat tccatgttct cattctatgg tgatgacgag atcgttagca ccgatataaa
     4621 attggaccca gaaaaattga ccacaaaatt gagagagtat ggtttgaaac cgacccgtcc
     4681 ggacaaaaca gagggacctc taattattag tgaggatttg gatggactca ccttcctccg
     4741 aagaacagtc tcccgtgatc cagctggctg gtttgggaaa ttggaccaaa gttcaatact
     4801 caggcaaatg tactggacca gaggacccaa ccatgaagac cccaatgaaa caatgatacc
     4861 tcactctcag aggcccatac aactcatggc cctacttggt gaagcctctc tacacgggcc
     4921 ctccttctac agcaaaatta gcaaattggt cataactgaa ctcaaggaag gtggaatgga
     4981 tttttacgtg ccaagacaag agcctatgtt caggtggatg aggttctctg acttgagcac
     5041 gtgggagggc gatcgcaatc tggctcccag ttttgtgaat gaagatggcg tcgaatgacg
     5101 ctactccatc aaatgatggt gccgccggcc tcgtgccaga aagtaataat gaggcaatgg
     5161 ctctggaacc cgtggtgggg gcgtctttag ccgcccctgt cactggccaa actaatataa
     5221 tagacccctg gattagaact aattttgtcc aagcccctaa tggtgaattc acagtttccc
     5281 ctagaaattc ccctggagag atattggtca atttggagtt aggtccagaa ctgaaccctt
     5341 atctggcaca tttagctagg atgtacaatg gttatgcggg tggtatggaa gtgcaagtga
     5401 tgctcgcggg gaacgcgttc accgctggca agattatctt tgccgccgtg ccaccttact
     5461 ttccagtgga aaatcttagc ccttcccaaa taacaatgtt cccacatgtg ataatcgatg
     5521 ttagaacctt ggaacctgtg ttgctcccaa tgcctgatgt cagaagtacc cttttccact
     5581 ttaatcaaaa ggatgaacct aagatgagac ttgttgccat gctttacacc cctcttcgtt
     5641 ctaatggttc tggtgacgac gttttcaccg tctcatgtag gattctcact aggccctccc
     5701 ctgaatttga ttttacatat ttggtaccac caacagtgga atcaaagact aagccattca
     5761 cactacctgt gctaacactg ggagaactgt ccaactctag atttcctctc tctattgatg
     5821 aaatggtcac cagtcccaat gagtccatag ttgttcagcc acagaatggt agggtcacac
     5881 tagatgggga gctgttaggc acaacccaac tgcaagcatg caacatttgt tccataaggg
     5941 ggaaggtgac agggcaggtc cctaatgaac aacacatgtg gaacctgcag atcacaaacc
     6001 taaatgggac gcaatttgac cctacagatg atgtcccagc cccccttggt gtgcccgatt
     6061 ttgcaggtga ggtctttggt gtactcagcc agagaaacag aggtgaaagc aacccagcaa
     6121 acagggctca tgatgctgtc gtggccacct acagtgacaa gtacacccct aaattgggct
     6181 tagtgcaaat tggaacttgg aacaccaatg atgttgaaaa ccagccaaca aaattcaccc
     6241 caattggttt aaatgaggtc gctaatggcc atcgatttga acagtggact ttgcctaggt
     6301 attctggtgc cctgacatta aatatgaatt tagcccctgc tgtggccccg ctcttccctg
     6361 gagagcgtct tcttttcttc cgctcttacg tcccattaaa aggtggattt ggaaaccctg
     6421 ctatagattg tctggtgcct caggagtggg tccaacattt ctatcaggaa tctgccccct
     6481 ctctggggga tgtggcctta gtcaggtacg tcaacccaga caccgggcgc gtactttttg
     6541 aggccaaact ccacaaaggt gggttcctga ctgtgtcaag tactagcaca gggcctgttg
     6601 tggttccagc caatggctat ttcagatttg actcctgggt caatcaattt tactctcttg
     6661 cccccatggg aactgggaat gggcgcagaa ggtttcagta atggcgggag ctttcatagc
     6721 aggtttagca ggtgatgtgc ttagtaatgg cctcggttca ctgattaatg ccggagccaa
     6781 tgctattaat caaagagcag agtttgattt taataggcaa ttgcaacaaa attctttcaa
     6841 tcatgataag gagatgttaa atgcccaaat tcaagcaaca aaacagttgc aggctgatat
     6901 gatagcaatc aaacagggag tcctagctgc tgggggtttc tcgccgaccg atgcagccag
     6961 aggagctgtt aatgcaccca tgacccaagc actagattgg agtggcacta ggtactgggc
     7021 ccctggttca atgaagacca ccagctattc tggaaagttt gtatccatga atcctgttag
     7081 gcaggttgag ttcccgcagc ccaaaaagag tgcggccata ccatcaagcg ccagctctgt
     7141 gtcctctggt aggaccaatt tgacaaattc cacccaatca actgttgtca gtacttcctc
     7201 actgccacct cctaggggct cttctgcccc ttctactctg tcaagggcca caaccagaac
     7261 ttctaattgg gttgaggaac aaaacaggaa tttggaaccc tacatgaggg gtgcccttca
     7321 aacaacattt gtcacccccc cttccagccg ggcatctagc aatggaacag tctcaactgt
     7381 accaaaaggt gttttggact cctggacacc tgcgtttaac acccgcaggc agccgctttt
     7441 tgcttacctt cgtaagaagg gggagtcaca agtttagtga aaagataatt aatgattaat
     7501 aattgatctt tt
//