Typing tool

Complete norovirus genomes

KJ196286  GII.17
 GII.P16

Length: 7,535 | 3 CDS

ORF1: 5..5101
ORF2: 5082..6704
ORF3: 6704..7480
LOCUS       KJ196286                7535 bp    RNA     linear   VRL 10-AUG-2014
DEFINITION  Norovirus GII/Hu/JP/2002/GII.P16_GII.17/Saitama/T87, complete
            genome.
ACCESSION   KJ196286
VERSION     KJ196286.1
KEYWORDS    .
SOURCE      Norovirus GII/Hu/JP/2002/GII.P16_GII.17/Saitama/T87
  ORGANISM  Norovirus GII/Hu/JP/2002/GII.P16_GII.17/Saitama/T87
            Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
            Picornavirales; Caliciviridae; Norovirus.
REFERENCE   1  (bases 1 to 7535)
  AUTHORS   Park,Y., Wu,F.-T., Miki,M., Amano,K., Ozawa,K., Murakami,K.,
            Todaka,R., Shimoike,T., Oka,T., Uchida,K., Shinohara,M. and
            Katayama,K.
  TITLE     Direct Submission
  JOURNAL   Submitted (17-JAN-2014) Department of Virology II, National
            Institute of Infectious Diseases, 4-7-1 Gakuen Musashi-Murayama,
            Tokyo 208-0011, Japan
COMMENT     ##Assembly-Data-START##
            Sequencing Technology :: Sanger dideoxy sequencing
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..7535
                     /organism="Norovirus
                     GII/Hu/JP/2002/GII.P16_GII.17/Saitama/T87"
                     /mol_type="genomic RNA"
                     /isolate="Saitama/T87"
                     /host="Homo sapiens"
                     /db_xref="taxon:1529916"
                     /country="Japan"
                     /collection_date="2002"
                     /note="genotype: GII.P16_GII.17"
     CDS             5..5101
                     /codon_start=1
                     /product="polyprotein"
                     /protein_id="AII73746.1"
                     /translation="MKMASNDASVAVACNNNNDKEKSSGEGLFTNMSSTLKKALGARP
                     KQPAPRDNSQKPPRPPTPELVKRIPPPPPNGEEEEPVIRFEVKSGISGLPELTTVPQP
                     DVTNTAFSVPPLSLRENREAKEPLTGAILEMWDGEIYHYGLYVEKGLVLGVHKPPAAI
                     SMAKVEMTPLSLYWRVVYTPQYLISPETLKRLNGEAFPYTAFDNNCYAFCCWVLDLND
                     SWLSRRMVQRTTGFFRPYQEWNRKPLPTMDDSKIKKVANIFLCSLSTLFTRPIKDIIG
                     KIKPLNILNILATCDWTFAGIVESLILLAELFGVFWTPPDVSAMIAPLLGEYELQGPE
                     DIAVELVPVVMGGIGLVLGFTKEKIGKMLSSAASTLRACKDLGAYGLEILKLVMKWFF
                     PKKEEANELAMVRAIEDAVLDLEAIENNHMTALLKDKDSLATYMKTLDLEEEKARRLS
                     TKSASPDIVGTINALLARIAAARSLVHRAKEELSSRIRPVVVMISGKPGIGKTHLARE
                     VARKVASTLTGDQRVGLIPRNGVDHWDAYKGERVVLWDDYGMSNPIHDALRIQELADT
                     CPLTLNCDRIENKGKVFDSEVIIITTNLANPAPLDYVNFEACSRRIDFLVYAEAPEVE
                     KAKRDFPGQPDMWKDAFKADFSHIKLQLAPQGGFDKNGNTPHGKGVMKTLTTGSLIAR
                     ASGLLHERMDEFELQGPTITTFNFDRNRITAFRQLAAENKYGLVDTMRVGNQLKGVKT
                     MEELKQAIKNVTIKRCQIIYNGSTFDLESDGKGKVLVEKVKNTSVQTNNELAGALHHL
                     RSARIRYYVKCVQEAVYSILQIAGAAFVTTRIARRMNIQELWSKPTLDQSEPEAREEA
                     PKLEDDEFIISSKDIKEEGKKGKNKTGRGRKHTAFSSKGLSDEEYDEYKRIREERNGK
                     YSIEEYLQDRDRYYEELAIAKATEEDFCEEEEIKIRQRIFRPTRKQRKEERATLGLVT
                     GSEIRKRNPDDFKPKGKLWADDNRSVDYNEKLDFEAPPSIWSRIVSFGSGWGFWVSPS
                     LFITSTHVIPAGITEAFGVPIKQVQVHKSGEFCRFRFPKPIRPDVTGMILEEGAPEGT
                     VATVLIKRPTGELMPLAARMGTHATMRIQGRMVGGQMGMLLTGSNAKGMDLGTTPGDC
                     GCPYIYKRGNDYVVIGVHTAAARGGNTVICATQGSEGEATLEGGDNKGTYCGAPILGP
                     GGAPKLSTKTKFWRSSNTPLPPGTYEPAYLGGRDPRVKGGPSLQQVMRDQLKPFTEPR
                     GKPPKPNVLEAAKQTIINVLEQTLDPPQKWTYAQACASLDKTTSSGHPHHVRKNEFWN
                     GETFVGKLADQASKANLMFEEGKHMTPVYTAALKDELVKTDKIYGKIKKRLLWGSDLS
                     TMIRCARAFGGLMDEMKAHCISLPVRVGMNMNEDGPIIFEKHSRYKYHYDADYSRWDS
                     TQQRAVLAAALEIMVRFSAEPQLAQTVAEDLLAPSVVDVGDFKISINEGLPSGVPCTS
                     QWNSITHWLLTLCALSEVTNLSPDIVQANSMFSFYGDDEIVSTDIKLDPEKLTTKLRE
                     YGLKPTRPDKTEGPLIISEDLNGLTFLRRTVSRDPAGWFGKLDQSSILRQMYWTRGPN
                     HEDPNETMIPHSQRPIQLMALLGEASLHGPSFYSKISKLVITELKEGGMDFYVPRQEP
                     MFRWMRFSDLSTWEGDRNLAPSFVNEDGVE"
     gene            5082..6704
                     /gene="VP1"
     CDS             5082..6704
                     /gene="VP1"
                     /codon_start=1
                     /product="VP1"
                     /protein_id="AII73747.1"
                     /translation="MKMASNDAAPSNDGATGLVPEINNETLPLEPVAGAAIAAPVTGQ
                     NNIIDPWIRTNFVQAPNGEFTVSPRNSPGEILLNLELGPDLNPYLAHLSRMYNGYAGG
                     VEVQVLLAGNAFTAGKILFAAVPPNFPVEFLSPAQITMLPHLIVDVRTLEPIMIPLPD
                     VRNTFFHYNNQPANRMRLVAMLYTPLRSNGSGDDVFTVSCRVLTRPTPDFEFTYLVPP
                     SVESKTKPFSLPILTISELTNSRFPAPIDSLFTAQNNNLNVQCQNGRCTLDGELQGTT
                     QLLPSGICAFRGRLTADVDGSHDDRWHMQLTNLNGTPFDPTEDVPAPLGTPDFTGLLF
                     GVASQRNVGSNPNTTRAHEAVISTTSSQFVPKLGSVNFGSTSTDFQLQQPTKFTPVGI
                     KIESGHEFDQWALPRYSGHLTLNMNLAPPIAPNFPGEQLLFFRSNVPCAGGVSDGVID
                     CLLPQEWIQHFYQESAPSQSDVALIRYVNPDTGRTLFEAKLHRTGYITVAHSGDYPLV
                     VPSNGYFRFDSWVNQFYSLAPMGTGNGRRRVQ"
     gene            6704..7480
                     /gene="VP2"
     CDS             6704..7480
                     /gene="VP2"
                     /codon_start=1
                     /product="VP2"
                     /protein_id="AII73748.1"
                     /translation="MAGAFIAGLAGDMLTNTVGSLVNAGANAITQKVDFENNKQLQAA
                     SFQHDKDMLQAQVAATKQLQADMIAIKQGILTAGGFSPTDAARGTVGAPMTKVLDWSG
                     TRYWAPNSTRTTGYSGQFTSTPLHTPVKTSQPAPAKRTQPLSSSSGSIYSLSTQSTVL
                     TKPSSGSSVSSASTQSTKLSSVSSMDRTADWVNQQRSLSPYMRGALNISHVTPPSSRA
                     SSSGTVSTVPKEVLDSWTPAFNTRRQPLFAHLRVRGESRV"
ORIGIN      
        1 gtgaatgaag atggcgtcta acgacgcttc cgttgccgtt gcttgcaaca acaacaacga
       61 caaggaaaaa tcttcgggtg aaggcttatt tacaaatatg tcttccaccc taaagaaagc
      121 cctcggggct cggcccaaac agcctgcccc gagggacaac tcacaaaagc ccccaagacc
      181 accaacgccc gagttggtta agaggatacc ccctccccca cctaatggcg aagaagaaga
      241 accagtcatt aggtttgagg ttaagagtgg aatctctggc ctgcccgagc tcacgacagt
      301 tccccaaccg gatgtgacca acacggcatt cagtgttccg ccgctgagct tgagagaaaa
      361 cagagaggcc aaggaaccgc tgactggggc aatactagag atgtgggatg gagagatata
      421 ccactatggc ttgtatgtgg agaaaggctt ggtgttgggt gtacacaaac cacctgcagc
      481 tataagtatg gcgaaagtgg aaatgacgcc gctgtcgtta tactggcgtg tggtgtatac
      541 cccccaatac ctcatctccc ctgaaactct caagaggctc aacggagagg cattccctta
      601 tactgccttt gataacaact gttatgcctt ttgctgctgg gtgttagacc ttaatgactc
      661 atggctcagc agaaggatgg tacaaagaac aacaggcttc tttagaccct accaagagtg
      721 gaacagaaaa cccctaccca ctatggatga ctccaaaatt aagaaggtgg caaacatatt
      781 cttatgttca ttgtccacgc tgttcaccag acctataaaa gacatcatag ggaaaattaa
      841 accattaaat atcttgaaca ttctggcaac gtgtgactgg acgtttgccg gaatcgtaga
      901 gtctctaata ttacttgctg aactctttgg agttttctgg acacccccag atgtgtctgc
      961 tatgatcgct cccctacttg gcgaatacga gttgcaaggg ccagaagaca tcgccgttga
     1021 gctcgtacct gtagtaatgg gagggattgg tttggtgcta ggattcacca aagagaaaat
     1081 tggcaaaatg ctatcctcag cagcgtcaac gctcagggct tgcaaagatc ttggtgccta
     1141 tggtttagag atactcaaat tagtcatgaa atggtttttc ccaaagaaag aagaggccaa
     1201 tgaactagcc atggtgagag caatagagga tgctgtgctg gatcttgagg cgatagaaaa
     1261 caaccacatg acagctctgc tgaaagacaa agacagcctt gcaacctaca tgaaaacact
     1321 ggatctagag gaagagaaag ccagaagatt gtccacaaaa tctgcatccc ctgacatagt
     1381 tgggacaatc aatgccctgt tggctcgaat agcggcagct agatcactag tccacagggc
     1441 caaggaggag ctatctagca ggatcagacc agttgttgtt atgatatctg gcaagccagg
     1501 gataggcaag actcacctgg ccagggaggt ggcaagaaag gtggcatcca ctctcacggg
     1561 ggatcaaaga gtcggactca taccgagaaa cggtgtggac cattgggacg catacaaagg
     1621 cgagagggtc gtgttgtggg acgactatgg catgagcaac cctattcatg atgccctgcg
     1681 catacaggaa ttggccgaca cgtgtcccct caccttaaat tgtgatagaa ttgaaaacaa
     1741 gggaaaagtt tttgatagtg aagtcataat aatcacaaca aacctcgcca atccagctcc
     1801 tcttgattat gtcaactttg aggcctgttc caggagaatt gatttcctgg tgtacgccga
     1861 agcaccagaa gtggagaagg caaaacgaga cttccctggt caaccagata tgtggaagga
     1921 cgctttcaaa gcggactttt cgcatatcaa gttacaactt gcgcctcagg gcggctttga
     1981 caagaatggc aacaccccac atgggaaagg agtgatgaaa accctcacta ccggttctct
     2041 gattgcccgt gcgtcaggtt tactgcatga gaggatggat gaatttgaac tccagggccc
     2101 cacaatcacc actttcaatt tcgaccggaa cagaatcacc gcctttagac aattggctgc
     2161 agaaaacaaa tatgggttgg tggacaccat gagagttggc aatcaattga aaggggtgaa
     2221 aaccatggaa gagcttaagc aagcaatcaa gaatgtgacc attaagaggt gccagattat
     2281 ctacaatggt tccacgttcg accttgagtc tgacggtaag ggtaaagttt tggtggaaaa
     2341 ggtcaaaaac acctctgtcc agaccaacaa tgagctggcc ggagccctac atcacctcag
     2401 aagtgctcga attagatact atgtcaaatg tgtgcaagaa gcagtctact ccatcctaca
     2461 aatcgccggc gctgcgttcg tcaccacacg tattgcacgc cgcatgaaca tacaagaact
     2521 ttggtcaaag ccaacattag accaaagcga accagaggct agagaagagg cccccaagtt
     2581 agaagatgat gagttcatca tatcctccaa agacatcaag gaggaaggaa agaagggcaa
     2641 aaacaagact ggccgtggca ggaaacacac tgcattttct agcaagggct taagcgatga
     2701 ggagtatgac gagtacaaga ggataagaga agagagaaat gggaagtact ctatagagga
     2761 gtatcttcaa gacagagaca ggtactatga ggaactcgcc atcgccaagg ccacggaaga
     2821 agacttttgc gaggaggaag aaattaaaat ccgccagagg atctttcgcc ccaccagaaa
     2881 acaaaggaag gaagaaaggg ccacgctagg gctagtgact ggttcagaaa tcagaaaaag
     2941 aaaccctgat gacttcaaac ctaaagggaa attgtgggcc gacgacaaca gaagtgttga
     3001 ctacaatgaa aaactggact ttgaggcccc cccaagcata tggtctagga ttgtgagctt
     3061 tggttccggt tggggttttt gggtgtcacc aagcctgttc ataacatcaa ctcatgtaat
     3121 ccctgcgggc ataacagagg cgtttggagt ccccatcaaa caagtccaag tccacaaatc
     3181 aggtgagttt tgccggttca ggttcccaaa accaattaga ccagatgtga caggaatgat
     3241 cctggaagaa ggtgcgccag agggcaccgt ggcaaccgtg ctcatcaaac gccccaccgg
     3301 agaactcatg cccctcgcag ccagaatggg aacacacgca accatgagaa ttcagggccg
     3361 catggttggc gggcagatgg gtatgttgct cactggttca aatgctaagg gtatggattt
     3421 ggggacaact cctggtgact gtggctgccc gtacatctac aaaaggggca atgactatgt
     3481 agtcattgga gtgcacacag cggcagcccg tggtggaaac actgtcatct gtgccacaca
     3541 gggaagcgaa ggtgaggcga ctctcgaggg tggagacaac aaaggaacat actgtggggc
     3601 acccatcctg ggtcctggag gagcaccaaa attgagcacc aaaaccaaat tttggagatc
     3661 atcaaacacg cccctcccac cagggacata tgagcccgcc taccttggcg gtcgtgaccc
     3721 gcgtgtaaag ggcggaccct ctttgcagca agtcatgaga gatcagttga agcccttcac
     3781 tgagcccagg ggtaaacctc caaaacctaa tgtgctggag gcagctaaac agaccatcat
     3841 caacgtcctc gagcaaactt tggacccccc acaaaagtgg acatacgcac aagcgtgcgc
     3901 ttcacttgat aagaccacct ctagtgggca cccccatcac gtccgaaaga atgaattctg
     3961 gaacggtgag acctttgttg gtaagttggc agaccaagca tcaaaagcga acctgatgtt
     4021 tgaggaaggg aaacacatga caccagtgta cacagcagcc ctcaaggatg agctggtcaa
     4081 gactgacaaa atctatggaa agatcaagaa gagattgctt tggggctctg acttgtccac
     4141 catgatccga tgtgccaggg cctttggtgg actcatggat gagatgaagg cacactgcat
     4201 atcactccca gtccgagttg gtatgaacat gaatgaggat ggcccaataa tatttgagaa
     4261 gcattccaga tacaagtacc attatgatgc agattactcc cgttgggact caacacaaca
     4321 gagggctgtc ctagcagcgg ccttggaaat aatggtcaga ttctctgcag aaccacaact
     4381 ggcgcaaaca gtcgctgaag atctgctggc ccccagtgtg gtagatgtag gagacttcaa
     4441 aatttcaata aatgaggggc tcccttctgg tgtaccatgc acttcccagt ggaactccat
     4501 cacacactgg ctgttgactc tctgtgcttt gtctgaagtc accaacctgt cccctgacat
     4561 cgtgcaggca aattccatgt tctcatttta cggtgatgac gagattgtca gcaccgatat
     4621 aaaattagac cctgaaaagt taaccaccaa attgagggag tatggtctga aaccaacccg
     4681 cccagacaaa accgagggac ctctgattat cagtgaggat ttgaacggac tcaccttcct
     4741 ccggaggaca gtttctcgtg acccagctgg ctggtttggg aagttagacc aaagctcgat
     4801 actgaggcag atgtattgga ccagaggacc aaaccatgaa gaccccaatg aaacaatgat
     4861 accccactct caaagaccca tacagctcat ggcactgctt ggtgaggcct ctcttcacgg
     4921 accctctttc tacagcaaga ttagtaaatt ggtcataacc gaactcaaag aaggtgggat
     4981 ggatttttac gtgccaaggc aggaacctat gttcaggtgg atgaggtttt ctgacttgag
     5041 cacgtgggag ggcgatcgca atctggctcc cagttttgtg aatgaagatg gcgtcgaatg
     5101 acgccgctcc atctaacgat ggtgctacgg gcctcgtccc agagatcaac aacgagaccc
     5161 tccctttgga accagttgcg ggtgcagcaa tcgccgcgcc tgtcactggc caaaataata
     5221 taattgatcc ctggattaga acaaattttg tacaagcacc caatggagag ttcactgtct
     5281 cacctagaaa ctcccctgga gaaattcttt taaatttaga attgggtcct gatttaaatc
     5341 catatttggc acatctatct agaatgtaca atgggtatgc cggtggcgtg gaagtccaag
     5401 tcctcctagc agggaacgcg ttcactgcag ggaagatcct cttcgctgcc gtaccaccaa
     5461 atttcccagt tgaattcttg agtcctgcac agattactat gttgccacac ctaatagttg
     5521 atgttagaac ccttgaaccc atcatgatac cactccctga tgttaggaac accttctttc
     5581 attacaacaa tcaacccgcc aaccgcatgc gattggtggc tatgttgtat acccctttga
     5641 gatctaatgg ttctggtgat gatgtcttca ctgtttcatg tagagtgcta actaggccca
     5701 ccccagattt tgagttcaca tatttggtcc ctccttcagt agagtctaag actaaaccct
     5761 tttctctgcc tatattaaca atttctgaat taaccaattc aagatttcct gcacccatag
     5821 attcattgtt tacagcccag aataacaatc tcaatgtcca atgtcagaat ggtcggtgca
     5881 cactggatgg tgagttgcag ggaaccactc aattgctgcc ctcgggtata tgtgctttca
     5941 ggggaagact aacagcagat gtagacggaa gtcacgatga cagatggcac atgcagttga
     6001 ccaacctcaa tggaaccccc tttgatccaa cagaggacgt gccggctccg ttaggcaccc
     6061 cagacttcac aggcctcctc ttcggagtgg caagtcagag gaatgttgga tccaacccaa
     6121 acaccactag ggcgcacgag gctgtgatct ccacaaccag ttcacagttt gtgccaaaat
     6181 taggatcagt caactttggt agtactagca ccgacttcca actacaacaa cccaccaaat
     6241 tcacaccagt tggaatcaag attgaaagtg gacacgaatt tgatcagtgg gccctaccta
     6301 gatactcagg tcatttgacc ctcaatatga accttgcccc acctattgcc ccaaatttcc
     6361 ctggtgagca gttgttgttc tttagatcaa atgttccttg tgctggtggc gtcagtgatg
     6421 gtgtcatcga ttgcttgttg cctcaggagt ggatacagca cttctatcag gagtctgctc
     6481 catcccagtc tgatgtggct ctgatcaggt atgtcaaccc tgacactggc cgcacactct
     6541 tcgaggcgaa actccacaga acaggctaca tcactgttgc ccactcaggt gattatcccc
     6601 tcgttgtccc ctccaatgga tattttagat ttgattcctg ggtcaaccag ttttactcac
     6661 tcgcccccat gggaacagga aatgggcgca gacgggtgca gtaatggcag gagctttcat
     6721 agcaggtctt gcaggtgaca tgctcaccaa cacagttggc tccctagtga atgctggggc
     6781 caatgctata acccaaaagg tggattttga gaacaacaaa cagctccaag cagcctcttt
     6841 tcaacatgac aaagacatgc ttcaagcaca ggtggctgcc acaaaacaat tgcaggctga
     6901 catgatcgcc atcaaacagg ggatattgac cgctggcggc ttttccccca ctgacgcggc
     6961 gagaggaaca gtgggtgcac ccatgaccaa ggtcctcgat tggtctggta ctcgttactg
     7021 ggcgccaaac tccacgagga caactggtta ctcagggcag ttcacatcaa cgcccttgca
     7081 cacacccgtg aaaacaagtc agcctgctcc tgccaaaagg acccaacccc tctcttcatc
     7141 ctcaggtagt atctacagcc tttcaacaca aagtactgtt ttgactaaac cttcttctgg
     7201 ttcttccgtt tcttctgctt caacgcaatc tacaaaattg agttcagttt cttcaatgga
     7261 taggacagca gattgggtta accaacaaag gagcctcagc ccttacatga gaggtgctct
     7321 caatatatct catgtaacac ctccatcaag tagggcttcg agttcgggaa cagtctcgac
     7381 tgtacccaag gaagttttgg actcctggac acctgcattc aatacacgca gacagccgct
     7441 cttcgcacac ctcagagtga ggggggagtc acgtgtttag tgaaaagaat caattaattt
     7501 taattaattt tgattaggtt ttaattggat ctttt
//