Typing tool

Complete norovirus genomes

KJ196284  GII.21
 GII.P21

Length: 7,491 | 3 CDS

ORF1: 5..5104
ORF2: 5085..6704
ORF3: 6704..7462
LOCUS       KJ196284                7491 bp    RNA     linear   VRL 10-AUG-2014
DEFINITION  Norovirus GII/Hu/JP/2007/GII.P21_GII.21/Kawasaki/YO284, complete
            genome.
ACCESSION   KJ196284
VERSION     KJ196284.1
KEYWORDS    .
SOURCE      Norovirus GII/Hu/JP/2007/GII.P21_GII.21/Kawasaki/YO284
  ORGANISM  Norovirus GII/Hu/JP/2007/GII.P21_GII.21/Kawasaki/YO284
            Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
            Picornavirales; Caliciviridae; Norovirus.
REFERENCE   1  (bases 1 to 7491)
  AUTHORS   Park,Y., Wu,F.-T., Miki,M., Amano,K., Ozawa,K., Murakami,K.,
            Todaka,R., Shimoike,T., Oka,T., Uchida,K., Shinohara,M. and
            Katayama,K.
  TITLE     Direct Submission
  JOURNAL   Submitted (17-JAN-2014) Department of Virology II, National
            Institute of Infectious Diseases, 4-7-1 Gakuen Musashi-Murayama,
            Tokyo 208-0011, Japan
COMMENT     ##Assembly-Data-START##
            Sequencing Technology :: Sanger dideoxy sequencing
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..7491
                     /organism="Norovirus
                     GII/Hu/JP/2007/GII.P21_GII.21/Kawasaki/YO284"
                     /mol_type="genomic RNA"
                     /isolate="Kawasaki/YO284"
                     /host="Homo sapiens"
                     /db_xref="taxon:1529919"
                     /country="Japan"
                     /collection_date="2007"
                     /note="genotype: GII.P21_GII.21"
     CDS             5..5104
                     /codon_start=1
                     /product="polyprotein"
                     /protein_id="AII73740.1"
                     /translation="MKMASNDASAAAAANSNNDNAKSSSDGVLSNMAVTFKRALGARP
                     KQPPPRDKPPRPPRPPTPELVNRIPPPPPNGEDEPTISYNVKEGVSGLPELSTVTQPE
                     ESSTAFSVPPLSQRENRDAKEPLTGTILEMWDGEIYHYGLYVERGLVLGVHKPPAAIS
                     LAKVELTPLSLYWRPVYTPQYLISPDTLRKLHGETFPYTAFDNNCYAFCCWVLDLNDS
                     WLSRRMIQRTTGFFRPYQDWNRKPLPTMDDSKVKKVANVLLCALSSLFTRPIKDIIGK
                     LKPLNILNILATCDWTFAGIVESLILLAELFGVFWTPPDVSAMIAPLLGDYELQGPED
                     LAVELVPVVMGGIGLVLGFTKEKIGKMLSSAASTLRACKDLGAYGLEILKLVMKWFFP
                     KKDETNELAMVRSIEDAVLDLEAIENNHMTALLKDKDSLATYMRTLDLEEEKARKLST
                     KSASPDIVGTINALLSRIAAARSLVHRAKEELSSRPRPVVVMISGRPGIGKTHLAREL
                     AKKIASSLTGDQRVGLIPRNGVDHWDAYKGERVVLWDDYGMSNPIHDALRLQELADTC
                     PLTLNCDRIENKGKVFDSDAIIITTNLANPAPLDYVNFEACSRRIDFLVYADAPEVEK
                     AKRDFPGQPDMWKDTFKPDFSHIKLTLAPQGGFDKNGNTPHGKGVMKTLTASSLVARA
                     SGLLHERLDEYELQGPTPTTFNFDRNKVLAFRQLAAENKYGLVDTMRVGSQLKNVKTM
                     TELKQALKNISVKKCQLVYGGSTYTLESDGKGNVCVEKVKNTSVQTNNELSGVFHHLR
                     CARIRYYVKCVQEALYSILQIAGAAFITTRIAKRMNIQNLWSKPQVEDLEETSNKEGC
                     PKPKDDEEFVISSDDIKTEGKKGKNKTGRGKKHTAFSSKGLSDEEYDEYKRIREERNG
                     KYSIEEYLQDRDKYYEEVAIARATEEDFCEEEEAKIRQRIFRPTRKQRKEERVSLGLV
                     TGSEIRKRNPDDFKPKGKLWADDDRSVDYNEKLNFEAPPSIWSRIVNFGSGWGFWVSP
                     SLFITSTHVIPQGAQEFFGVPIKQIQIHKSGEFCRLRFPKPIRTDVTGMILEEGAPEG
                     TVATLLIKRPTGELMPLAARMGTHATMKIQGRTVGGQMGMLLTGSNAKSMDLGTTPGD
                     CGCPYIYKRGNDYVVIGVHTAAARGGNTVICATQGSEGEAMLEGGDNKGTYCGAPILG
                     PGNAPKLSTKTKFWRSSTTPLPPGTYEPAYLGGKDPRVKGGPSLQQVMRDQLKPFTEP
                     RGKPPKPSVLEAAKKTIINVLEQTIDPPQKWTYAQACASLDKTTSSGHPHHMRKNECW
                     NGETFTGKLADQASKANLMYEEGKNMTPVYTGALKDELVKTDKIYGKIKKRLLWGSDL
                     STMIRCARAFGGLMDELKAHCVTLPVRVGMNMNEDGPIIFEKHSRYRYHYDADYSRWD
                     STQQRAVLAAALEIMVKFSSEPHLAQVVAEDLLSPSVMDVGDFKISINEGLPSGVPCT
                     SQWNSIAHWLLTLCALSEVTDLSPDIIQANSLFSFYGDDEIVSTDIKLDPEKLTAKLK
                     EYGLKPTRPDKTEGPLIISEDLDGLTFLRRTVTRDPAGWFGKLDQSSILRQMYWTRGP
                     NHEDPSETMIPHSQRPIQLMSLLGEAALHGPSFYSKISKLVISELKEGGMDFYVPRQE
                     PMFRWMRFSDLSTWEGDRNLAPSFVNEDGVE"
     gene            5085..6704
                     /gene="VP1"
     CDS             5085..6704
                     /gene="VP1"
                     /codon_start=1
                     /product="VP1"
                     /protein_id="AII73741.1"
                     /translation="MKMASNDAAPSNDGATGLVPEINTETLPLEPVAGAAIAAPVTGQ
                     NNIIDPWIRNNFVQAPNGEFTVSPRNSPGEILMNLELGPDLNPYLAHLSRMYNGYAGG
                     VEVQVLLAGNAFTAGKILFAAVPPNFPVDMLSPAQITMLPHLIVDVRTLEPIMIPLPD
                     VRNVFYHFNNQPAPRMRLVAMLYTPLRSNGSGDDVFTVSCRVLTRPTPDFEFTYLVPP
                     SVESKTKPFTLPILTIGELTNSRFPAPIDQLYTSPNADIVVQPQNGRCTLDGELQGTT
                     QLLTTAICSYRGMTSNPTSDYWDDHLLHLVHPNGATYDPTEDVPAPFGTQDFRGILYG
                     MLTQNPRTSGDEAANSHGIYISSTSEKFTPKLGTIGLHQVQGDIASNQQSKFTPVGIA
                     VNGNTPFRQWELPNYSGALTLNTNLAPAVGPNFPGEQILFFRSNVPSVQGGQPIEIDC
                     LIPQEWVSHFYQESAPSQSDVALVRYVNPDTGRTIFEAKLHRQGFITIAATGSNPVVV
                     PPNGYFRFDSWVNQFYALAPMGTGNGRRRVQ"
     gene            6704..7462
                     /gene="VP2"
     CDS             6704..7462
                     /gene="VP2"
                     /codon_start=1
                     /product="VP2"
                     /protein_id="AII73742.1"
                     /translation="MAGAFIAGLAGDMLTNTVGSLVTAGANAINQKVEYDFTKQLQSA
                     SFQHDKDMLQAQINATKQLQSDMMAIKAGVLTAGGFSPADAARGAVNAPMTKVLDWSG
                     TRYWAPNSTKTTSQSGQFSSTTVHRPFVQSKTVQPSPSRALSSSGSVRSLSTQSTMLS
                     NSSSSSRGTPSTQSTDISSSRTADWVRSQRSLSPYMDGALQTAFVTPPSSRASSTGTV
                     STVPKGVLDSWTPAFNTRRQPLFAHLRKRGESQA"
ORIGIN      
        1 gtgaatgaag atggcgtcta acgacgcttc cgctgccgct gctgccaaca gcaacaacga
       61 caacgcaaaa tcatcaagtg acggagtatt atctaatatg gccgtcactt ttaaacgagc
      121 cctcggggcg cggcccaaac aaccgccccc gagggacaaa ccaccaagac ccccgagacc
      181 acccacacca gagttggtta atagaattcc ccctccccca cccaacgggg aggacgagcc
      241 aaccatttct tacaacgtca aagagggtgt ttctggcttg cctgaactct caacggtcac
      301 ccaaccggaa gagagctcta cggcattcag cgttccccct cttagtcaga gggagaacag
      361 ggatgcaaag gaacccctaa ctggaaccat cctggagatg tgggacgggg agatctacca
      421 ttatggctta tatgtggaac gaggattagt gctcggtgta cacaaaccac cggcagccat
      481 cagccttgct aaggttgagc tgaccccctt gtccttgtac tggagacctg tgtacacccc
      541 acagtatctc atttcccctg acactctcag aaagttgcat ggggagacgt tcccttacac
      601 agcctttgac aacaactgtt atgccttctg ctgttgggtt cttgacttga acgattcatg
      661 gctgagcaga aggatgatac agaggacaac gggcttcttt cggccttacc aggactggaa
      721 caggaaaccc ctccccacga tggacgactc caaagtgaag aaggtggcca atgttctcct
      781 ctgtgctctc tcatcattgt ttactagacc aattaaggac attattggaa agttgaaacc
      841 cctaaatatc ctcaacattc tagccacatg tgattggact tttgcaggca tagtagaatc
      901 cctgatcctc ttggctgaac tgtttggagt tttctggaca cccccagatg tgtctgcaat
      961 gatcgctccc ttactgggtg attatgagct acaggggccc gaggacctcg ctgtggaact
     1021 cgtgcccgta gtaatgggag ggataggttt ggtgctggga ttcaccaaag agaaaattgg
     1081 caaaatgctt tcatctgctg cttcaaccct gagggcgtgt aaagatctcg gagcttatgg
     1141 gctggagata ctcaagttgg tcatgaagtg gtttttccca aagaaagacg aaacaaatga
     1201 gttggcaatg gtgagatcca tcgaggatgc agtgctagac ctcgaggcca ttgagaacaa
     1261 ccatatgaca gccctactca aggataagga cagccttgca acctacatga ggactcttga
     1321 cttggaggag gagaaggcga ggaagttgtc caccaagtct gcatcaccgg acatcgtggg
     1381 cacgattaac gccctactgt caaggattgc agctgcccgg tctctagtac acagggctaa
     1441 ggaggaattg tcaagtaggc ctcgaccggt cgttgtgatg atttcaggga gaccaggtat
     1501 agggaagacc catctagcta gagagttggc aaagaagatt gcctcctcac tcacaggtga
     1561 ccagagggtg ggcctcatcc cacgcaacgg ggtcgaccac tgggatgcat acaaaggtga
     1621 aagagtcgtc ctctgggacg actacgggat gagcaaccct atccacgacg ccctcagact
     1681 ccaggagctc gctgacacct gccccctcac acttaactgt gacaggattg agaacaaagg
     1741 caaagtcttt gacagtgacg ccataataat aaccaccaat ttagccaacc cagcgccact
     1801 ggattatgtc aactttgaag cttgctcaag acgtatagac ttcctcgtct atgctgatgc
     1861 ccctgaagtt gagaaggcta aacgggactt cccaggccag ccagatatgt ggaaggacac
     1921 cttcaaacct gacttctcac acataaaact gacattagcc ccacaaggag gttttgacaa
     1981 gaacggcaac accccccatg ggaagggtgt tatgaagacc ctcactgcta gctccctcgt
     2041 tgcccgagca tcagggctcc tccacgagag actagacgag tatgagctgc aaggcccaac
     2101 tcccacaaca ttcaacttcg accgcaacaa ggtgcttgct tttaggcagc tcgctgctga
     2161 gaacaagtac ggtctcgttg acacaatgag ggtcggatca cagctcaaga atgtcaaaac
     2221 catgacagaa ctcaaacagg ctctcaagaa catctcagtc aagaaatgcc agcttgtgta
     2281 tggcgggagc acgtacacac tcgaatctga tggtaaaggc aatgtgtgtg ttgagaaggt
     2341 gaagaacaca agtgtgcaga ctaacaacga actctccggc gtttttcacc acctcaggtg
     2401 tgccaggatc aggtactatg tcaagtgtgt ccaggaagct ctctactcca tcttgcaaat
     2461 tgccggggct gcattcatca ccacgcgcat tgcaaagcgc atgaacatac aaaacctctg
     2521 gtccaaacca caagtggaag atttggagga gactagcaac aaagagggct gtccaaaacc
     2581 taaagatgat gaggaatttg tcatctcctc tgatgacatc aaaaccgagg gcaagaaagg
     2641 aaagaacaag actggccgtg gcaagaagca cacagccttt tccagcaaag gcctcagtga
     2701 tgaggagtac gatgagtata agaggatcag agaagagaga aatggcaagt actccataga
     2761 ggaataccta caggacagag acaagtacta tgaggaggtg gccatagcca gggcaactga
     2821 ggaagatttc tgtgaagaag aggaggccaa aatccggcaa aggatattca gaccaacaag
     2881 aaaacaacgc aaagaggaaa gggtctctct tggtttggtc acaggttctg agattaggaa
     2941 gagaaatcca gatgacttta aacctaaagg gaaactatgg gctgatgatg acaggagtgt
     3001 tgactacaat gagaaactta atttcgaggc tccaccaagc atttggtcac gaatagtcaa
     3061 ctttggctca gggtggggct tttgggtctc gcctagcctc ttcataacat caacccatgt
     3121 cattccccaa ggcgcacagg agttctttgg agtgcccatc aaacagatac aaattcacaa
     3181 atcaggagag ttctgccggc ttagattccc aaaaccaatc aggacagatg tcacgggcat
     3241 gatcttagag gaaggtgctc cagaaggtac tgttgccaca ctcctcatca agagaccaac
     3301 tggagaactc atgcccttgg cagccagaat gggtacccac gcgaccatga aaatccaggg
     3361 tcgcactgtt ggtgggcaga tgggcatgct acttacaggg tctaacgcca agagcatgga
     3421 tttgggcaca acccctggcg attgtggctg tccctacatc tacaagaggg ggaacgacta
     3481 cgtggtcatt ggagttcaca ccgccgctgc tcgtggagga aacactgtca tctgtgcaac
     3541 ccaaggaagc gagggtgaag ccatgctaga gggtggcgat aataagggaa cctactgtgg
     3601 agcaccaata ttaggccctg gaaatgcccc caaactcagc accaaaacca aattctggag
     3661 gtcttccacc acccccctgc cacccggaac ctatgaacca gcttatctgg gcggcaagga
     3721 ccccagagtg aaaggtggtc cctcactgca acaggttatg agggatcagc taaaaccatt
     3781 cactgagccc agaggcaaac cacccaaacc tagtgtgcta gaagctgcca agaagactat
     3841 aatcaatgtg cttgaacaga caatagaccc acctcaaaaa tggacatacg cacaggcgtg
     3901 tgcatcacta gataagacca cttccagcgg ccaccctcac cacatgcgga agaacgagtg
     3961 ctggaacgga gagactttca caggaaaact ggcagaccaa gcatcaaagg ctaacctaat
     4021 gtatgaggaa ggaaagaaca tgaccccagt atacacagga gctttgaagg acgagctagt
     4081 caagactgat aagatctatg ggaagatcaa aaagagactc ctatggggtt cagacctatc
     4141 aaccatgata cggtgtgcac gagccttcgg tgggctgatg gacgagctca aggcccattg
     4201 cgtcacacta ccagtcaggg ttggcatgaa tatgaatgag gatggaccca taatatttga
     4261 gaaacattcc agatacagat atcattatga tgcagattac tcccgctggg actcgacaca
     4321 gcaaagagca gtgctggctg cagccctgga aataatggtc aaattttcat cagaacctca
     4381 tctggcccaa gtggttgcag aagacctctt gtcccccagt gtgatggatg tgggtgattt
     4441 caagatatca atcaatgagg ggttaccctc tggtgtgcct tgcacctcac agtggaactc
     4501 cattgcccac tggcttctca cactatgtgc actgtctgaa gtcacagatc tgtcccctga
     4561 catcatccag gcaaactccc tattctcctt ttatggtgat gatgaaatag tgagcacaga
     4621 tatcaaattg gacccagaga aactgacagc aaagttgaag gaatacgggc taaaaccaac
     4681 ccgtcctgat aaaacagaag gacccctaat tatctctgaa gacttggacg gcctgacctt
     4741 cttacggaga acggtgaccc gcgatccggc tgggtggttt ggcaaactgg accaaagttc
     4801 aatactcaga caaatgtact ggaccagggg accaaaccat gaggacccct ctgaaacaat
     4861 gataccacac tcccaaagac ccatacaact gatgtcacta ctaggtgaag ctgcactaca
     4921 tggcccatca ttctatagta aaattagcaa gttggtcatc tcagaattga aagagggtgg
     4981 gatggacttt tacgtgccca gacaagaacc aatgtttagg tggatgaggt tctcagattt
     5041 gagcacgtgg gagggcgatc gcaatctggc tcccagtttt gtgaatgaag atggcgtcga
     5101 atgacgccgc tccatctaac gatggtgcta caggtctcgt accagagatc aacactgaga
     5161 ccttgcctct cgagcccgtg gccggagcgg caattgctgc ccctgttacg ggccaaaata
     5221 atataattga tccctggatt agaaataatt ttgtgcaggc gcctaatggt gagtttacag
     5281 tctcccctag aaattcccct ggtgaaattt taatgaactt ggagttaggg ccagatctta
     5341 atccatattt ggctcacctt tcaagaatgt acaatggtta tgctggaggt gtagaagtgc
     5401 aagtgctcct agctgggaat gcgttcacgg caggaaagat cctttttgca gcagtccccc
     5461 caaatttccc cgttgatatg ctcagtcctg ctcaaatcac aatgcttccc catttaattg
     5521 tagatgtcag aactttggag cccattatga tccctctgcc cgatgttagg aatgttttct
     5581 atcactttaa taaccagcct gccccaagaa tgagattggt tgccatgctc tacacccctt
     5641 taagatccaa tgggtccggt gatgacgtat tcaccgtctc ctgcagggtg ttaaccagac
     5701 ctactccgga ctttgagttt acatacttag tccccccctc ggtagagtcc aaaaccaaac
     5761 ctttcaccct acccatccta acaattggag agttgacaaa ctctagattt ccagccccga
     5821 tcgatcagtt gtacacttca cccaacgctg atatagttgt ccaaccccaa aatggccggt
     5881 gcacactgga tggtgagcta caaggtacaa cacaactctt gacaacagca atatgctcat
     5941 acaggggcat gacatcaaac cccactagtg actactggga tgatcacctc ctgcacctgg
     6001 ttcaccccaa tggggcaaca tatgacccga ccgaggacgt gccagctcct tttggcacgc
     6061 aggactttcg gggcattttg tatgggatgt tgactcaaaa cccccgaacc tccggggacg
     6121 aagccgccaa ctcccatggg atctacatct catccaccag tgaaaagttc actccaaaat
     6181 tgggtacaat tggcttacac caagtgcaag gcgacatagc cagcaaccaa cagtcaaaat
     6241 tcacaccagt agggatagca gtgaatggca acactccttt cagacagtgg gaactcccaa
     6301 actactctgg tgccctcacc ctcaacacaa accttgcacc agcggttggg cccaacttcc
     6361 ctggggagca aatccttttc ttcaggtcaa atgttccaag tgttcaaggt ggccaaccta
     6421 tagagattga ttgcctgatc ccacaagaat gggtctccca tttttatcaa gaatcagccc
     6481 cttctcagag tgatgtggcc ttggtcaggt atgtcaaccc tgacacaggg cgcacaatct
     6541 ttgaggccaa attgcatagg cagggattta tcaccatagc ggccactgga agcaaccccg
     6601 tggtcgtgcc tcccaatggg tatttcagat ttgattcctg ggtcaaccag ttttatgcac
     6661 tcgcccccat gggaactggg aatgggcgca gaagagttca gtaatggctg gagctttcat
     6721 agcaggattg gcaggtgaca tgctcaccaa cactgttggt tccctggtca cagcgggggc
     6781 taacgctata aaccaaaaag ttgaatatga cttcaccaaa caactgcaaa gtgcctcctt
     6841 ccaacatgac aaggacatgc ttcaagccca gatcaacgca acaaaacaat tgcagagtga
     6901 catgatggcc atcaaagcag gggttttgac cgctggcggc ttttcccctg ctgatgcagc
     6961 cagaggggca gtcaatgctc caatgacaaa agtcttagat tggtcaggga cgcgttactg
     7021 ggcacccaac tcaaccaaaa caacaagcca atctggccag ttctcctcta caactgtaca
     7081 tagacccttt gttcaatcaa aaactgtcca accatctcct tcgcgggcgc tctcatcttc
     7141 gggtagcgtt cgcagccttt ctactcaatc aacaatgctt tcaaattcta gctcctcttc
     7201 tcgtgggact ccttcaactc aatcaacaga tatttcttcc tcgcgaacgg cagactgggt
     7261 tcgaagtcag aggagcctga gcccctatat ggatggggct ctgcagacag cctttgtcac
     7321 cccaccatca agcagagctt cttctacagg caccgtctca acagtgccta aaggggtttt
     7381 ggactcctgg acacctgcgt tcaacacccg caggcagccg cttttcgcac acctcaggaa
     7441 gaggggggag tcacaagcct agtgaaaaga attattttga taaattcttt t
//