Typing tool

Complete norovirus genomes

KJ196278  GII.14
 GII.P7

Length: 7,529 | 3 CDS

ORF1: 5..5098
ORF2: 5079..6689
ORF3: 6689..7483
LOCUS       KJ196278                7529 bp    RNA     linear   VRL 10-AUG-2014
DEFINITION  Norovirus GII/Hu/JP/2007/GII.P7_GII.14/Sendai/YG99, complete
            genome.
ACCESSION   KJ196278
VERSION     KJ196278.1
KEYWORDS    .
SOURCE      Norovirus GII/Hu/JP/2007/GII.P7_GII.14/Sendai/YG99
  ORGANISM  Norovirus GII/Hu/JP/2007/GII.P7_GII.14/Sendai/YG99
            Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
            Picornavirales; Caliciviridae; Norovirus.
REFERENCE   1  (bases 1 to 7529)
  AUTHORS   Park,Y., Wu,F.-T., Miki,M., Amano,K., Ozawa,K., Murakami,K.,
            Todaka,R., Shimoike,T., Oka,T., Uchida,K., Shinohara,M. and
            Katayama,K.
  TITLE     Direct Submission
  JOURNAL   Submitted (17-JAN-2014) Department of Virology II, National
            Institute of Infectious Diseases, 4-7-1 Gakuen Musashi-Murayama,
            Tokyo 208-0011, Japan
COMMENT     ##Assembly-Data-START##
            Sequencing Technology :: Sanger dideoxy sequencing
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..7529
                     /organism="Norovirus
                     GII/Hu/JP/2007/GII.P7_GII.14/Sendai/YG99"
                     /mol_type="genomic RNA"
                     /isolate="Sendai/YG99"
                     /host="Homo sapiens"
                     /db_xref="taxon:1529921"
                     /country="Japan"
                     /collection_date="2007"
                     /note="genotype: GII.P7_GII.14"
     CDS             5..5098
                     /codon_start=1
                     /product="polyprotein"
                     /protein_id="AII73722.1"
                     /translation="MKMASNDATAAFGSQNSVNDSINATPSNKEEVGAFSNIKVGFKK
                     MLGAVPKGTRAPSSGQHCPTVKIGPKTLTIPPEPPNGEDTVQFDAKSETIIGLPDLTT
                     VQNEHENTPYTVPPLSEREHRSATEPLPGTILEMWDGEFFHYSVYVSDGKALGVHKPP
                     AAISLATIELTPISLYWRPVYTPNYLVSPDTLKGLAGEKFPYTAFSNNCYNFCCWVLE
                     LNDTWLNRRCISRTTGFFKPYQAWNRKPLPTVDDGKIKKVANAILCALGSLFSKPIKD
                     LLGKLKPLNLLHLLASCDWTFAGIVETVILMAELFNIFWTPPDVSNFIASLIGDFELQ
                     GPEDLAVELVPVVMGGIGMVLGFTAEKIGRMLSSAASTLRACKDLGNYALDILKLVMK
                     WFFPKKEEKAEMETLRAIEDAVLDMEAIGNNHLTTLLKDKDSLTAFMKTLDLEEEKAR
                     KLSTKSSSPDIVGTINAILARIAAARSLLHKAKEEMFSRIRPVVVMISGRPGIGKTHM
                     ARHLAKSIANTMSGDQRVGLVPRNGVDHWDAYRGERVVLWDDYGMGSPVKDALTLQEL
                     ADTCPVTLNCDRIENKGKMFDSDVIIITTNLVNPAPLDYVNFEACSRRVDFLVYAESP
                     EIEKVKRDFPGQPDMWKDHFKPDFSHIKLTLAPQGGFDKNGNTPHGKGTMRSLTQGSL
                     TARVAGLVHERRDEFQLQGNDLQTYNFDTNRVSAFRKLAADNKYGIMETMRVGAALKN
                     VKTLEDLKFALRDVKFNECEIIYKNSKYRVSSNGKGSVSVDKIENNASQTANEVQSAL
                     LRLRQARARYYISCFQDLVYTLIQVAGASFVVNRISKRFCWERWVKPTEAQEVNESEK
                     EVAQGRWEIEPKDTEPEGKKGKNKKGRGKKHTAFSSKGLSDEEYDEFKRIREERNGKY
                     SIEEYLQDRDRYYEEVAVARATEEDFCEEEEAKIRQRIFRPTKKQRKEERGVLGLVTG
                     TDIRKRRPDDFQPKGNLWADDTRSVDYNERLDFEAPPSVWSRIVPLGTGWGFWVSSNL
                     LITTTHVLPKGVKELFGVEIKQIQVHKSGEFCRFRFPRPIRPDVTGLVLEEGAPEGTV
                     CSILIKRPTGEMIPLAVRMGTHASMKIQGRTVGGQMGMLLTGANAKNMDLGTGPGDCG
                     CPYIYKRGNDIVVAGVHTAAARGGNTVICATQGQDGEAVLEGNEDLGTYCGAPILGPG
                     KAPKLSTKTKFWRSSPDALPPGTYEPAYLGGKDPRVERGPSLQQVMRDQLRPFTDPRG
                     KPPRPAVLEEAKKTVMNVLEQTIDPAKPWSYSQACASLDKTTSSGSPHHVKKNDHWNG
                     ESFTGPLADQASKANLMYEQAKHVQPVYTAALKDELVKTDKIYKKIKKRLLWGSDLGT
                     MIRCARAFGGLMDSMKASCIALPCRVGMNMNEDGPIIFDKHSKYRYHYDADYSRWDST
                     QQRSILSAAMEVMVRFSAEPELAQVVAEDLLAPSQLDVGDFIISVQEGLPSGVPCTSQ
                     WNSIAHWILTLSAMAEVSGLSPDVVQAHSCFSFYGDDEIVSTDINLDPMKLTQKLREY
                     GLVPTRPDKTEGPLVITEDLTGLTFLRRSIARDPAGWFGKLDQDSILRQLYWTRGPNH
                     ENPYESMVPHSQRATQLMALLGEASLHGPQFYKKVSKMVINEIKSGGLEFYVPRQEAM
                     FRWMRFSDLSTWEGDRNLAPEGVNEDGVE"
     gene            5079..6689
                     /gene="VP1"
     CDS             5079..6689
                     /gene="VP1"
                     /codon_start=1
                     /product="VP1"
                     /protein_id="AII73723.1"
                     /translation="MKMASNDATPSDDGAAGLVPEINSEVMALEPVAGASIAAPVVGQ
                     QNIIDPWIRNNFVQAPAGEFTVSPRNSPGELLLDLELGPELNPYLAHLARMYNGHAGG
                     MEVQIVLAGNAFTAGKILFAAIPPSFPYENLSPAQLTMCPHVIVDVRQLEPVLLPMPD
                     IRNVFYHYNQNNSPKLRLVAMLYTPLRANNSGDDVFTVSCRVLTRPSPDFQFTFLVPP
                     TVESKTKNFTLPVLRVSEMTNSRFPVVLDQMYTSRNENIIVQPQNGRCTTDGELLGTT
                     ILQSVSICNFKGTMQAKLNEEPRYQLQLTNLDGSPIDPTDDMPAPLGTPDFQAVLYGV
                     ASQRSSRDNATRAHDAQIDTAGDTFAPKIGQVRFKSSSNDFDLHDPTKFTPIGVNVDD
                     QHPFRQWSLPNYGGHLALNNHLAPAVTPLFPGEQILFFRSYIPSAGGHTDGAMDCLLP
                     QEWVEHFYQEAAPSQSDIALVRFINPDTGRVLFEAKLHKQGFLTIAASGDHPIVMPTN
                     GYFRFEAWVNPFYTLAPVGTGSGRRRIQ"
     gene            6689..7483
                     /gene="VP2"
     CDS             6689..7483
                     /gene="VP2"
                     /codon_start=1
                     /product="VP2"
                     /protein_id="AII73724.1"
                     /translation="MAGAFLAGLAGDVVTSSLGSLVGAGANAINQKVEYDFNRQLQEA
                     SFRHDKDMLKAQVAATAGLQQAMIDIKREALTAGGFSPADAARGAVRAPMTQILDWNG
                     SRYWAPNSMKTTGYSGTFASQGIKSSPHLSNQIPSAVKSTKPLPSISSSSSVYSSPST
                     APSQSTQSTTLSAGTGSSRSNTVSTKTSTLSRTSDWVRGQNEMLGPFMSGALQTAYVT
                     PPSSRASSQGTVSTVPKAVLDSWTPMFNTHRQPLFAHLRRRGESQI"
ORIGIN      
        1 gtgaatgaag atggcgtcta acgacgctac cgctgccttt ggcagtcaaa actctgtcaa
       61 tgacagtatc aacgccaccc cttccaataa ggaagaggtt ggtgcattct ccaacatcaa
      121 agttggattt aagaaaatgc tgggtgctgt acccaagggc accagagcac ccagcagtgg
      181 tcaacattgc cccacagtta agatcgggcc taaaacatta acaattcccc ctgagccccc
      241 aaatggtgaa gacactgtgc agtttgatgc aaagtcggaa actataatcg ggctgccgga
      301 cttgacaacg gtgcaaaacg agcatgaaaa caccccatac accgtccccc cattaagtga
      361 gagggagcac agatcggcca ctgaaccact tcctggcaca atattggaga tgtgggatgg
      421 tgaatttttc cactactccg tgtatgtcag cgatggcaaa gctctggggg tccacaaacc
      481 accggctgct ataagcctcg cgacgataga gctcaccccc atatctctct actggagacc
      541 cgtttacacc cccaactatt tggtctcccc agacacattg aaaggcctcg ctggtgagaa
      601 gttcccctac acggccttca gtaacaattg ttataacttt tgttgttggg tgcttgagct
      661 caacgacacg tggctcaaca gaagatgcat ttccagaacc accggcttct tcaaacctta
      721 tcaagcttgg aacaggaagc ccctcccaac cgttgatgat ggaaagatca aaaaggtggc
      781 caacgcgatc ctctgcgcac ttggctcact gttctcaaaa ccaatcaaag atttgttagg
      841 caaacttaag ccattgaacc tgctacactt gcttgcgtca tgcgattgga cgtttgcagg
      901 tatagtggag acagtcatct taatggcaga acttttcaat atcttctgga ccccgccaga
      961 tgtctctaat tttatagcct ccctgatagg tgattttgaa ttacaagggc ctgaggacct
     1021 ggctgtggaa ctcgttcctg tggttatggg tggcatagga atggttctcg gcttcaccgc
     1081 tgagaagata ggccgtatgc tgtcatccgc cgcatcaaca ctgcgggcat gcaaagacct
     1141 agggaactat gcccttgaca ttctcaaatt ggtcatgaag tggttcttcc caaagaagga
     1201 agagaaagct gagatggaaa ctttgagggc gatcgaggat gccgtcctag atatggaagc
     1261 tatagggaat aaccatctca cgaccctcct caaggacaaa gacagcctca cggcttttat
     1321 gaagaccctg gacctagaag aggaaaaagc aagaaaactg tccactaagt catcttcacc
     1381 ggacatcgtc ggcaccatta atgccatact agctaggatt gctgctgcca gatcccttct
     1441 acataaggcc aaagaagaga tgtttagtag gatcagacca gtggtcgtta tgatatcagg
     1501 cagacctggc attggcaaaa cccacatggc aagacatttg gctaagagca tcgccaacac
     1561 catgagtggc gaccagagag tcgggctcgt cccacgcaac ggtgtcgacc actgggatgc
     1621 ctacagagga gagagggtgg tcttgtggga tgactacggt atggggagcc ctgttaaaga
     1681 tgccttaaca ctacaggagc tggccgacac ctgtccagtc actttaaatt gtgataggat
     1741 tgagaacaag gggaagatgt tcgacagtga tgtcatcata atcacaacca acctggtcaa
     1801 ccccgcgccc ctcgactatg tgaacttcga ggcgtgttcc aggagagttg acttcttggt
     1861 ctatgcagag tcaccagaga ttgaaaaggt caagagggac ttccctggcc aacctgacat
     1921 gtggaaagac cattttaagc cagacttttc tcacatcaag ctaactttag ccccccaggg
     1981 cgggtttgac aagaatggta acactccaca cggtaagggt accatgcggt ccctgaccca
     2041 ggggtccctg actgcaagag ttgcgggcct tgtccatgag aggagagatg agttccaact
     2101 ccaaggaaac gacctccaaa catacaattt tgacaccaac agagtctccg cattcagaaa
     2161 actggctgca gataacaagt atggtatcat ggaaacgatg agagtaggtg cggcactcaa
     2221 aaatgtgaag accttggaag atctaaaatt tgcactaagg gatgtaaaat tcaatgagtg
     2281 tgaaataatt tacaagaact ctaagtatcg agtctcttcc aacggtaaag gctcagtttc
     2341 tgttgacaaa attgagaaca atgcatccca gaccgcaaac gaggtacaat cagcacttct
     2401 caggctcaga caagcgaggg ccagatatta catcagctgc ttccaagacc tcgtctacac
     2461 tctcatacag gttgccggag catcattcgt tgtcaacaga atttccaaaa ggttctgctg
     2521 ggaaaggtgg gtcaaaccaa ccgaggccca agaagtgaat gagtccgaaa aggaagtggc
     2581 tcaaggtaga tgggaaattg agcccaagga cacagaacca gaaggcaaga agggtaaaaa
     2641 caagaaagga aggggtaaga aacacacagc tttctctagc aaaggcctga gtgatgaaga
     2701 gtatgacgag ttcaagagaa tcagggaaga aaggaatgga aagtactcca ttgaggaata
     2761 cctgcaagac cgggaccgct attatgaaga agtggcagtt gcccgggcaa cagaggagga
     2821 cttctgtgaa gaggaagagg ccaaaataag acaaagaatt ttccgcccga caaagaaaca
     2881 aaggaaggag gaaaggggtg tacttggctt agtcaccggc acagacatca gaaagaggag
     2941 accagacgat tttcaaccaa aaggcaatct atgggcagat gacaccagga gtgtggacta
     3001 caatgagaga cttgattttg aagcgccccc aagtgtctgg tcaagaatag tcccattagg
     3061 cactggttgg ggtttctggg tttcatccaa ccttctaatc acaacaacac acgtcctgcc
     3121 taaaggggtt aaggaactct ttggagttga aatcaaacag atccaagttc acaagtctgg
     3181 agagttttgc aggtttagat tcccaagacc aatcaggcca gatgtcacag ggctcgtgtt
     3241 ggaggaaggc gccccagaag gcactgtctg ttctatactc ataaaaagac ctacaggtga
     3301 gatgatcccc ttggcagtga ggatgggcac acacgcatcc atgaaaatac aaggcaggac
     3361 cgttggtggc cagatgggaa tgcttctaac aggagcaaat gcgaagaaca tggatcttgg
     3421 caccggccct ggtgactgcg gttgtcccta catctacaaa cgcggcaacg atatagttgt
     3481 cgcgggcgtc cacaccgcag cagcccgggg aggtaacact gtcatatgcg ccacccaagg
     3541 gcaagatggg gaagcagtcc ttgagggaaa tgaggacctc ggtacctact gtggcgcccc
     3601 aattctgggc cctggtaagg cacctaaact cagcacgaag accaagtttt ggcgctcatc
     3661 accagatgcc ttgccacctg gcacatatga acctgcttac ctgggaggca aagaccccag
     3721 agtggaaaga ggaccttccc tgcagcaagt catgagagac cagttgagac ccttcacaga
     3781 ccccagggga aaaccgccta gacctgcagt cttagaagaa gccaagaaga cagtgatgaa
     3841 tgttttagaa caaaccattg accctgcaaa accgtggtcc tactcgcaag catgtgcctc
     3901 actggacaaa accacttcta gtggtagccc ccatcatgta aagaaaaatg accactggaa
     3961 tggggagtcc ttcactggtc ccctagcaga tcaggcatcc aaagccaacc tcatgtatga
     4021 acaggctaaa catgtgcagc ccgtgtacac ggccgcgctc aaagatgagc ttgttaagac
     4081 tgacaagatc tacaaaaaga taaagaagag gctcctatgg ggatcggacc ttggaacaat
     4141 gatcaggtgc gccagggctt ttggtggtct catggacagc atgaaggcaa gctgtatagc
     4201 tcttccatgc agggtaggaa tgaacatgaa tgaagatggc cctatcatat ttgacaaaca
     4261 ttctaagtat aggtaccact atgatgctga ctattccagg tgggactcaa cccagcaaag
     4321 gagcattctt tctgccgcta tggaagtgat ggtgcgattt tctgctgaac cagaattggc
     4381 acaagtggtt gcagaggacc ttttggcgcc tagtcagctt gatgttggtg attttatcat
     4441 ctcagttcag gagggtctgc catcaggagt cccatgtaca tcacaatgga actcaatagc
     4501 acactggatc ctaactttga gtgcgatggc agaagtgtca ggtctctcac cagatgttgt
     4561 ccaagctcac tcttgctttt cattttatgg ggacgatgag atcgtcagca ccgacatcaa
     4621 ccttgacccc atgaagttga cacagaaact cagggagtac ggcctggtcc ccacccgacc
     4681 tgataaaact gaaggtcccc tcgtcataac tgaagatctc accggcctga cgttccttcg
     4741 taggtcgatt gcacgggacc cagctggatg gtttggaaaa ttggaccaag attcaatcct
     4801 caggcaacta tactggacaa ggggacctaa ccacgagaac ccgtacgaga gcatggtccc
     4861 tcattcccag cgagccacac agcttatggc tctccttggt gaggcttcac tgcatggtcc
     4921 ccaattttac aagaaagtca gcaagatggt tattaatgag attaagagtg gtggtctgga
     4981 attttatgtg cccagacagg aggccatgtt caggtggatg agattctctg acctcagcac
     5041 atgggagggc gatcgcaatc ttgctcccga aggtgtgaat gaagatggcg tcgaatgacg
     5101 ctactccatc tgatgatggt gcagccggcc tcgtaccaga gatcaacagt gaggttatgg
     5161 ctcttgaacc cgtcgctggg gcctccattg cagcccccgt agtcggccaa cagaatataa
     5221 ttgatccctg gattagaaat aattttgtac aagcccctgc tggtgaattc acagtttccc
     5281 ctagaaactc tcctggagaa cttctacttg atttggaatt gggtcctgaa cttaatccct
     5341 atcttgcaca tttggccagg atgtacaatg ggcacgcagg aggaatggaa gtgcagatag
     5401 tactggctgg gaatgcgttc acagctggta aaatcctatt tgctgccatc ccgcctagct
     5461 tcccctatga aaatttgtca cccgctcaat tgactatgtg tccccatgtg atagtggatg
     5521 tgagacaatt agaaccagtg cttctgccaa tgccagatat aagaaatgtt ttctatcact
     5581 ataaccagaa caatagtccc aaacttaggc ttgtagctat gctttatact cctctgaggg
     5641 ctaacaactc aggtgatgac gtgttcacgg tgtcttgccg cgttttaaca cgtccttctc
     5701 cagatttcca gttcaccttt ctggtcccac ctacagttga gtctaaaact aagaatttca
     5761 cccttcccgt tcttagagtc tcagagatga caaattcaag gttccccgtt gttttggacc
     5821 aaatgtacac aagcaggaat gaaaacatca ttgtccaacc ccaaaacggc aggtgcacga
     5881 ctgacggtga gctgcttggc actaccatct tgcagtctgt gtctatttgc aattttaaag
     5941 gaacaatgca ggcaaagctg aatgaagaac cacgatacca gttacaactc accaacttgg
     6001 atgggtcacc catagatcca acagatgata tgcctgcccc tcttggcaca ccagatttcc
     6061 aggccgtgtt atatggcgtt gcaagccaac gctcttccag agacaatgcc accagggcac
     6121 atgatgcaca gattgacact gcgggtgaca cattcgcccc gaaaattggc caggttcgtt
     6181 ttaaatcaag ctctaatgat tttgacctac atgaccctac aaaattcaca cctattggtg
     6241 ttaatgtgga tgatcagcac ccttttagac agtggtccct accaaactac ggtggtcacc
     6301 ttgccctgaa caatcatttg gcccccgctg tgacaccact ctttcctggc gagcagattt
     6361 tgttcttcag gtcatacatt ccaagcgccg gaggccacac agatggtgct atggactgct
     6421 tgctgcccca agagtgggtg gagcacttct accaggaagc tgccccttcc caatctgaca
     6481 tcgcactggt aaggttcatt aaccctgaca caggaagagt gctctttgaa gctaaattgc
     6541 ataaacaagg tttcctcaca attgcagcat ctggagatca ccctattgtg atgcccacta
     6601 atggttactt taggtttgaa gcttgggtca accctttcta tactctcgcc cccgtgggaa
     6661 ctgggtctgg gcgcaggagg attcaataat ggctggagct ttccttgcag gcttggcagg
     6721 tgacgttgtg acttccagct tgggctcact tgtgggcgct ggagccaacg ccattaacca
     6781 gaaagtggag tatgacttca acagacagct ccaggaggca tcttttagac atgataagga
     6841 tatgctcaaa gcccaggttg cagcaacagc aggccttcaa caggccatga tagacatcaa
     6901 gcgggaggca ttgaccgcag gcggcttttc ccccgctgat gctgcaagag gtgcagttag
     6961 agcgcctatg acacagattc ttgactggaa tggttctagg tattgggccc ccaactccat
     7021 gaagacaact ggctattcag gtacatttgc ttcccaaggc attaaaagtt ccccccactt
     7081 gtctaatcaa attccaagtg ctgttaaatc taccaaacct ttaccatcta tatctagttc
     7141 ttctagtgta tatagttctc cttctactgc cccttcacaa tcaacacaat caacaacgct
     7201 gtctgcagga acagggtcct ccagatctaa caccgtgtcc acaaagacct ctacactgtc
     7261 gaggacaagt gactgggtca gaggtcaaaa tgagatgctt ggcccgttca tgagtggtgc
     7321 actccaaact gcctatgtca caccaccatc gagcagggcc tcatcacaag ggacggtctc
     7381 gaccgtaccc aaggctgttt tggactcctg gactcccatg ttcaacaccc acaggcagcc
     7441 tctcttcgcc cacttgcgta ggcgagggga gtcacagatt tagtgaaaag gatgattagg
     7501 gtttcttcct ttccccttct tattctttt
//