Typing tool

Complete norovirus genomes

KJ196277  GII.5
 GII.P40

Length: 7,554 | 3 CDS

ORF1: 5..5140
ORF2: 5121..6743
ORF3: 6743..7519
LOCUS       KJ196277                7554 bp    RNA     linear   VRL 10-AUG-2014
DEFINITION  Norovirus GII/Hu/JP/2001/GII.P22_GII.5/Saitama/T49, complete
            genome.
ACCESSION   KJ196277
VERSION     KJ196277.1
KEYWORDS    .
SOURCE      Norovirus GII/Hu/JP/2001/GII.P22_GII.5/Saitama/T49
  ORGANISM  Norovirus GII/Hu/JP/2001/GII.P22_GII.5/Saitama/T49
            Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
            Picornavirales; Caliciviridae; Norovirus.
REFERENCE   1  (bases 1 to 7554)
  AUTHORS   Park,Y., Wu,F.-T., Miki,M., Amano,K., Ozawa,K., Murakami,K.,
            Todaka,R., Shimoike,T., Oka,T., Uchida,K., Shinohara,M. and
            Katayama,K.
  TITLE     Direct Submission
  JOURNAL   Submitted (17-JAN-2014) Department of Virology II, National
            Institute of Infectious Diseases, 4-7-1 Gakuen Musashi-Murayama,
            Tokyo 208-0011, Japan
FEATURES             Location/Qualifiers
     source          1..7554
                     /organism="Norovirus
                     GII/Hu/JP/2001/GII.P22_GII.5/Saitama/T49"
                     /mol_type="genomic RNA"
                     /isolate="Saitama/T49"
                     /host="Homo sapiens"
                     /db_xref="taxon:1529914"
                     /country="Japan"
                     /collection_date="2001"
                     /note="genotype: GII.P22_GII.5"
     CDS             5..5140
                     /codon_start=1
                     /product="polyprotein"
                     /protein_id="AII73719.1"
                     /translation="MKMASNDAATATAGKTSTNSVIHNQDVNSTSSLFANMTVGLKRA
                     LGARPKQPAPRVPSPNREGKHETTPRAPPPNKGGKANIPPIPPPPPNGEDIVIKYTKQ
                     DDAVEGVPTVATVDVPPTHNTAYSVPPLDQREKIEAKEPLTGSILEMWDGEIYHYGLY
                     VEKGLVLGVHKPPAAISFARIELTPLSLYWRTVYTPPYLIAPETLRKLHGESFPYTAF
                     DNNCYSFCCWVLDLNDSWLNRKFVSRTTGFYRPYQEWNRKPLPTMDEGKLKKVANVLL
                     CGLSGLFTRPIKDLIGKLRPLNILNIITNCDWTFPGVVEALILLAELFGVFWTPPDIS
                     TFIASLLGDYEMQGPEDIAVEVVPVILGGIGMVLGFTKERIGRLLSSAASSLRACREI
                     GNYGIEVVKLVMKWFFPTKDETNEMDMVRAIEDAVLDFEAIQNNHMTALLKDKNSLAT
                     FLRELDMEEEKARKLSTKSASPDIIGTINALLARIAAARSLVHKAKEEMSSRMRPVVI
                     MISGRPGIGKTHLARDLAKKMAATLSGDQRVGLVPRNGVDHWDAYKGERIVLWDDYGM
                     SNPVTDALRLQELADTCPLTLNCDRIENKGKVFDSDTIIITTNLANPAPLDYVNFEAC
                     SRRIDFLVYADSPSVDKAKRDFPGQPDMWKDAFKPDFSHIKLQLAPQGGFDKNGNTPH
                     GKGVMKTLTTHSLIARATGLLHERLDEFDLQGPELPVYNFDHNRVAAFRRLAADNKYG
                     LMETIKVGNKLKGVKTLEQLKDALKDISIMPCRIVYNSMAYDLDSNGSGRVSVKKVVD
                     HKIQTNNELNSALNNLRGARVRYYVKCVQEMVYSLLQIAGAAFVTSRMTRRLNVSSIW
                     VRPEKQVEATEEPPSPPTEDWTITPANAVQEGKKGKNKSGRGKKHTAFSSKGLSDEEY
                     DEYKRIREERQGKYSIEEYLQDRDRYYEELAIAKATEENFCEEEEIKIRQRVFRPTRK
                     QRKEERATLGLVTGSEIRKRNPDDFKPRGKLWADDDRSVNYNEKIDFEAPPSLWSRIV
                     NFGSGWGFWVSSNLLITSTHVIPPNMTEAFGVPISQIQVHRSGEFCKMRFPKAIRPDV
                     SGMILEEGAPEGTVVTILIKRTTGELMPLAARMGTHATMKIQGKMLGGQMGMLLTGSN
                     AKNMDLGTIPGDCGCPYVYKRGNDWVVIGVHTAAARGGNTVICATQGPDGEATLEGGD
                     NHGTYCGAPILGPGSAPKLSTKTKFWRSSNAPLPPGTYEPAYLGGKDPRVKGGPSLQQ
                     VMREQLKPFTAPRGKPPRPAILEAAKETICNVLEQIIDPPQKWSYAQACASLDKTTSS
                     GHPHHMKKNVNWNGESFTGVLADQASKANLMFEQGKHMQPVYTAALKDELVKTSKIYE
                     KIKKRLLWGSDVGTMIRCARAFGGLMDEMKANCVNLPIRVGMNMNEDGPIIFEKHSKY
                     KYHYDADYSRWDSTQQRHILGAALEIMVRFSAEPELAQIVSEDLLAPSVVDVGDFKIT
                     INEGLPSGVPCTSQWNSISHWLITLCAISEISGLSPDVVQTNSCFSFYGDDEIVSTDI
                     KLDPMKLTNKLKEYGLIPTRPDKTEGPLIVKENLDGLTFLRRDVCRDPAGWYGKLDQS
                     SIMRQLFWTKGPNHDDPNETMIPHSQRPIQLMSLLGEAALHGPAFYKKVSKLVITELK
                     EGGMDFYVPRQEPMFRWMRFSDLSTWEGDRNLAPEGVNEDGVE"
     gene            5121..6743
                     /gene="VP1"
     CDS             5121..6743
                     /gene="VP1"
                     /codon_start=1
                     /product="VP1"
                     /protein_id="AII73720.1"
                     /translation="MKMASNDATPSNDGAAGLVPESNNEAMALEPVVGASLAAPVTGQ
                     TNIIDPWIRTNFVQAPNGEFTVSPRNSPGEILVNLELGPELNPYLAHLARMYNGYAGG
                     MEVQVMLAGNAFTAGKIIFAAVPPYFPVENLSPSQITMFPHVIVDVRTLEPVLLPMPD
                     VRSTLFHFNQKDEPKMRLVAMLYTPLRSNGSGDDVFTVSCRILTRPSPEFDFTYLVPP
                     TVESKTKPFTLPVLTLGELSNSRFPLSIDEMVTSPNESIVVQPQNGRVTLDGELLGTT
                     QLQACNICSIRGKVTGQVPNEQHMWNLEITNLNGTQFDPTDDVPAPLGVPDFAGEVFG
                     VLSQRNRGESNPANRAHDAVVATYSDKYTPKLGLVQIGTWNTNDVENQPTKFTPIGLN
                     EVANGHRFEQWTLPRYSGALTLNMNLAPAVAPLFPGERLLFFRSYVPLKGGFGNPAID
                     CLVPQEWVQHFYQESAPSLGDVALVRYVNPDTGRVLFEAKLHKGGFLTVSSTSTGPVV
                     VPANGYFRFDSWVNQFYSLAPMGTGNGRRRFQ"
     gene            6743..7519
                     /gene="VP2"
     CDS             6743..7519
                     /gene="VP2"
                     /codon_start=1
                     /product="VP2"
                     /protein_id="AII73721.1"
                     /translation="MAGAFIAGLAGDVLSNGLGSLINAGANAINQRAEFDFNRQLQQN
                     SFNHDKEMLNAQIQATKQLQADMIAIKQGVLAAGGFSPTDAARGAVNAPMTQALDWSG
                     TRYWAPGSMKTTSYSGKFVSMNPVRQVEFPQPKKSAAIPSSASSVSSGRTNFTNSTQS
                     TVVSTSSMPPSRGSSAPSTLSRATTRTSNWVEEQNRNLEPYMRGALQTTFVTPPSSRA
                     SSNGTVSTVPKGVLDSWTPAFNTRRQPLFAHLRKKGESQA"
ORIGIN      
        1 gtgaatgaag atggcgtcta acgacgctgc cactgcgacc gctggcaaaa ccagcacaaa
       61 cagtgtaatt cacaaccaag atgtaaattc tacatctagc ctctttgcca acatgactgt
      121 tggcctgaag agggccctgg gggcgagacc aaaacaaccc gcccccaggg ttccttcccc
      181 caatagggag ggaaaacatg aaaccactcc tagagctccc cccccgaaca agggaggaaa
      241 ggctaacatc ccaccaatac cacccccacc gcccaacggg gaggacatag tcatcaaata
      301 taccaaacag gatgacgcgg ttgaaggggt gcccaccgtc gccacggttg atgttccccc
      361 cacacacaac accgcttaca gtgtcccccc cctggatcag agggaaaaga ttgaagcgaa
      421 ggagcccttg acaggttcga tacttgagat gtgggacggt gagatctacc actatggcct
      481 ctacgtggag aagggcttgg ttcttggtgt gcacaaacct ccagctgcca taagctttgc
      541 acgcatagag ctcactcccc tctctctata ctggagaaca gtctacactc caccttacct
      601 gatagcccca gaaaccctaa ggaaactcca tggggagtca ttcccatata cagcctttga
      661 caacaattgc tactccttct gctgctgggt cctggacctg aacgattctt ggctcaacag
      721 gaaatttgtg tcaaggacca cgggtttcta caggccctac caagagtgga acagaaaacc
      781 tttgccaacc atggatgaag gaaagctcaa gaaagtggcc aatgtgcttc tatgtggtct
      841 ctctgggctt ttcactaggc ccatcaagga cctcataggg aagttgaggc cactaaacat
      901 actaaacatc atcaccaatt gcgactggac cttccccgga gttgtggagg ctctcatact
      961 gcttgcagag ctctttggag ttttctggac accaccagac atttccacct tcatagcttc
     1021 acttctgggt gactatgaaa tgcagggccc cgaggatatc gcggttgaag tcgtaccggt
     1081 gatcctcggc ggtataggca tggtacttgg attcaccaaa gaaagaattg gccgattgtt
     1141 gagctctgcc gcttcctcac ttagagcatg cagggagatc ggtaactatg ggatagaggt
     1201 agtgaagctg gtgatgaaat ggtttttccc caccaaagat gagacaaatg agatggatat
     1261 ggtgagggca atagaggatg ctgttcttga ctttgaagcc atacagaaca atcacatgac
     1321 agcattgctt aaagacaaaa acagccttgc aaccttcctc agggagctag atatggaaga
     1381 ggaaaaggcg cggaagctat caacaaaatc tgcgtcccca gatattatcg gcaccataaa
     1441 cgcccttcta gccaggattg ccgctgctag gtccctagtc cacaaggcca aggaagaaat
     1501 gtcatctagg atgcgtcctg ttgtcatcat gatctccggc cggcccggaa tagggaagac
     1561 gcatctggcc cgcgacctgg ctaagaagat ggcggcgacc ctctcaggtg accagagagt
     1621 ggggctcgtg ccgaggaatg gtgttgacca ttgggatgca tataaaggag agaggatcgt
     1681 actctgggat gattatggaa tgagcaaccc tgtgactgat gcgctgcggc tccaggagct
     1741 tgccgacaca tgtcccctaa cgctcaactg tgatagaata gaaaataagg gaaaagtgtt
     1801 tgacagtgac actataatca ttaccaccaa tttggccaat cctgctcctc tagattatgt
     1861 caactttgaa gcttgctccc gccgaatcga cttccttgtc tatgcagact ccccctcggt
     1921 ggacaaggcg aagagagact tccctggtca gccagacatg tggaaggatg cctttaaacc
     1981 ggacttttca cacataaaac ttcagttggc accacaggga ggctttgata agaacgggaa
     2041 cacccctcat gggaaaggtg tcatgaaaac gctaaccaca cactcactca tcgcccgcgc
     2101 cacgggcctc ctacacgaaa gattggatga attcgacctg cagggacccg agttgcccgt
     2161 gtacaatttt gaccataaca gggtggctgc tttcaggaga ctggcagctg acaacaagta
     2221 tgggcttatg gaaaccataa aggtgggtaa caaattgaaa ggcgtcaaga ctctagaaca
     2281 actcaaggac gctctaaaag acataagtat catgccttgc agaatagtct acaactcgat
     2341 ggcttacgac ctcgattcga acggatcagg gagagtcagt gtcaaaaagg ttgtagacca
     2401 caagatccaa accaacaacg agctcaattc cgcactcaac aacctgcgcg gcgccagagt
     2461 gagatactat gttaaatgcg ttcaagagat ggtatattcc ctccttcaaa ttgctggcgc
     2521 agccttcgtc acctcaagaa tgacacggag gttgaacgtc agcagcattt gggtcagacc
     2581 agaaaagcaa gtggaggcca ctgaggaacc cccatccccc ccaactgagg actggactat
     2641 aaccccagca aatgcagtcc aggaaggtaa aaagggcaag aacaagagcg gcagaggcaa
     2701 gaaacacacc gccttctcca gtaaaggcct aagtgatgag gagtatgatg agtataaaag
     2761 aatcagagaa gagagacaag gaaaatactc catagaagaa taccttcagg atagggatcg
     2821 gtattatgaa gaattggcca tagccaaggc aacagaggag aacttctgtg aggaggaaga
     2881 aataaaaatc agacagaggg tctttcgtcc gaccaggaaa caacgcaagg aagagagggc
     2941 aactctagga ctggtcacag gcagtgaaat aaggaagagg aacccagatg atttcaagcc
     3001 aagaggaaaa ttgtgggctg atgatgaccg cagtgtaaat tacaatgaga aaatagactt
     3061 tgaagcgcct cccagccttt ggtcccgaat agtcaacttc ggatcaggtt ggggtttttg
     3121 ggtttcttcc aacttgctca tcacatcaac acatgtcatc cccccgaaca tgactgaggc
     3181 ctttggtgta ccaataagtc agatacaagt acatagaagt ggggagtttt gtaaaatgag
     3241 gttccctaaa gctataagac ctgatgtctc aggcatgatc cttgaagaag gagctcccga
     3301 gggaacggtg gtgaccatac tgatcaagag gaccaccggt gagctcatgc cactggccgc
     3361 ccgaatgggt acccacgcca ccatgaaaat tcaagggaaa atgcttggag gccaaatggg
     3421 catgcttctc acggggtcca acgccaagaa catggacctc ggtaccattc ctggagactg
     3481 tggttgtccc tatgtttaca agaggggtaa tgattgggtg gtcatagggg tgcacaccgc
     3541 agccgccaga ggtggcaaca ctgtgatttg tgccactcag gggccagacg gtgaggccac
     3601 gcttgagggg ggagacaacc acgggactta ctgtggggca ccaatactcg gaccaggaag
     3661 tgcaccaaaa ctcagcacca aaactaagtt ctggaggtca tccaacgccc cactcccgcc
     3721 tggtacttat gagcccgcct acctaggcgg aaaggaccca agagtcaagg ggggaccatc
     3781 actacagcaa gtcatgaggg aacaactcaa acctttcaca gccccccgag ggaagccacc
     3841 acgaccggcg atcctggagg ctgctaagga aaccatctgt aatgtacttg agcagatcat
     3901 tgacccaccc caaaaatggt cttacgctca ggcctgtgcc tctctggaca aaacaacatc
     3961 cagtggccat ccccaccata tgaaaaagaa tgtcaactgg aacggagagt ctttcactgg
     4021 tgtgttagct gaccaagctt ccaaggcaaa cctcatgttt gaacaaggga aacacatgca
     4081 acctgtgtat actgctgccc tcaaagacga gctcgtcaag actagcaaga tctatgagaa
     4141 aattaagaag aggctcctat ggggttcaga tgtgggcaca atgatccgct gtgctagggc
     4201 ttttggaggc ctcatggatg agatgaaagc aaattgtgta aacttaccaa tcagagttgg
     4261 catgaacatg aatgaagatg gacccatcat tttcgagaaa cattcaaagt ataagtacca
     4321 ttatgatgct gactactcta ggtgggactc aacccaacag agacatatct tgggggctgc
     4381 ccttgaaata atggttagat tctcagctga acctgaattg gcccaaattg tatctgaaga
     4441 tctcctagcc cccagcgtgg tggacgttgg cgacttcaaa atcaccataa atgaaggttt
     4501 accttctgga gtgccgtgca catcacaatg gaactcaatt tctcactggc taataacact
     4561 atgtgccata tcagaaattt cagggctgtc gccagatgtg gtacaaacaa actcctgttt
     4621 ctccttctat ggggatgatg agatagtcag cactgacatt aagttagatc ccatgaaact
     4681 aaccaacaag ttgaaagagt atggactgat cccaacaaga ccagacaaga cagaggggcc
     4741 actcatagtc aaagagaacc ttgatggctt gaccttcctg aggagggatg tgtgtcggga
     4801 cccagctggt tggtatggaa aacttgatca atcctcaatc atgagacaat tgttctggac
     4861 caaggggccc aaccatgacg accccaatga gacaatgatt ccacactccc agaggcccat
     4921 acaactaatg tcgttgctgg gggaggcagc attacacggg ccagctttct acaagaaagt
     4981 cagtaaatta gttatcactg agctcaaaga gggtggaatg gatttttacg tgccaaggca
     5041 ggaacctatg tttaggtgga tgagattctc tgacctcagc acttgggagg gcgatcgcaa
     5101 tcttgctccc gaaggtgtga atgaagatgg cgtcgaatga cgctactcca tcaaatgatg
     5161 gtgctgccgg cctcgtgcca gaaagtaaca atgaggcaat ggctctggaa cccgtggtgg
     5221 gggcgtcttt agccgcccct gtcactggcc aaactaatat aatagacccc tggattagaa
     5281 ctaattttgt ccaagcccct aatggtgaat tcacagtttc ccctagaaat tcccctggag
     5341 agatattggt caatttggag ttgggtccag aactgaaccc ttatctggca catttagcta
     5401 ggatgtacaa tggctatgcg ggtggtatgg aggtgcaagt gatgctcgcg gggaacgcgt
     5461 tcactgctgg caagatcatc tttgccgccg tgccacctta ctttccagtg gaaaatctta
     5521 gcccttccca aataacaatg ttcccgcatg tgattgtcga tgttagaacc ttagaacctg
     5581 tattgctccc aatgcctgat gtcagaagca ccctctttca cttcaatcaa aaggatgaac
     5641 ctaagatgag acttgttgcc atgctttaca cccctcttcg ctccaatggc tctggtgacg
     5701 acgttttcac tgtctcatgt aggatcctca ctaggccctc ccctgaattt gatttcacat
     5761 acttggtgcc accaacagta gaatcaaaga ccaagccatt cacactacct gtgctgaccc
     5821 tgggagaact gtccaattct agattccctc tctctattga tgaaatggtc accagcccta
     5881 atgagtccat agttgttcag ccacagaatg gcagggtcac actagatggg gagctgttag
     5941 gcacaaccca actgcaagca tgtaacattt gctccataag ggggaaagtg acaggacagg
     6001 tccctaatga acaacacatg tggaacctgg agattacaaa cctaaatggg acgcaatttg
     6061 accctacaga tgatgtccca gcccctcttg gtgtgcccga ctttgcaggt gaggtctttg
     6121 gtgtactcag ccagagaaat agaggtgaaa gcaacccagc aaacagggct catgatgctg
     6181 tcgtggctac ctacagtgat aaatacaccc ctaaattggg cttagtgcaa attgggactt
     6241 ggaacaccaa tgatgttgaa aaccagccaa caaaattcac cccaattggt ctgaatgagg
     6301 tcgccaatgg ccatcgattt gaacagtgga ctttgcctag gtattctggt gccctgacac
     6361 taaatatgaa tttagctcct gctgtggccc cgctctttcc tggagagcgc ctccttttct
     6421 tccgctctta cgtcccatta aaaggtggat ttggaaaccc tgctatagat tgtctagtgc
     6481 ctcaggagtg ggtccaacat ttctatcagg aatctgcccc atctctgggg gatgtggcct
     6541 tagtcaggta cgtcaaccca gacaccgggc gcgtcctttt tgaggccaaa ctccacaaag
     6601 gtgggttcct gaccgtgtca agcactagca cagggcctgt tgtggtccca gccaatggct
     6661 atttcagatt tgattcctgg gttaatcaat tttactctct tgcccccatg ggaactggga
     6721 atgggcgcag aaggtttcag taatggcagg agctttcata gcaggtttag caggtgatgt
     6781 gcttagtaat ggcctcggtt cgctgattaa tgccggagcc aatgctatca atcaaagagc
     6841 agaatttgat tttaataggc aattgcaaca aaattctttc aaccatgata aggagatgtt
     6901 aaatgcccaa attcaagcaa caaaacagtt gcaggctgat atgatagcaa tcaaacaggg
     6961 agtcctagct gctgggggtt tctcaccaac tgatgcagcc agaggagctg tcaatgcacc
     7021 catgacccaa gcactggatt ggagtggcac taggtactgg gcccctggtt caatgaagac
     7081 caccagctat tctggaaagt ttgtgtccat gaatcctgtt aggcaggttg agttcccgca
     7141 gcccaaaaag agtgcggcca taccatcaag cgccagctct gtgtcttctg gtaggaccaa
     7201 ttttacaaat tctactcaat caactgtagt tagcacttcc tcaatgccac cttctagggg
     7261 ttcgtctgct ccttctactc tgtcaagggc cacaactaga acctccaatt gggttgagga
     7321 acaaaacagg aatttggaac cctacatgag gggcgccctc caaacaacat ttgtcacccc
     7381 cccttccagc cgggcatcta gcaatggtac agtctcaact gtaccaaaag gtgttttgga
     7441 ctcctggaca cctgcgttta acacccgcag gcagccgctt ttcgctcacc ttcgcaagaa
     7501 gggggagtca caagcttagt gaaaagataa ttaatgatta ataattgatc tttt
//