Typing tool

Complete norovirus genomes

KJ196276  GII.13
 GII.P12

Length: 7,491 | 3 CDS

ORF1: 5..5104
ORF2: 5085..6713
ORF3: 6713..7447
LOCUS       KJ196276                7491 bp    RNA     linear   VRL 10-AUG-2014
DEFINITION  Norovirus GII/Hu/JP/2002/GII.P12_GII.13/Saitama/T80, complete
            genome.
ACCESSION   KJ196276
VERSION     KJ196276.1
KEYWORDS    .
SOURCE      Norovirus GII/Hu/JP/2002/GII.P12_GII.13/Saitama/T80
  ORGANISM  Norovirus GII/Hu/JP/2002/GII.P12_GII.13/Saitama/T80
            Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
            Picornavirales; Caliciviridae; Norovirus.
REFERENCE   1  (bases 1 to 7491)
  AUTHORS   Park,Y., Wu,F.-T., Miki,M., Amano,K., Ozawa,K., Murakami,K.,
            Todaka,R., Shimoike,T., Oka,T., Uchida,K., Shinohara,M. and
            Katayama,K.
  TITLE     Direct Submission
  JOURNAL   Submitted (17-JAN-2014) Department of Virology II, National
            Institute of Infectious Diseases, 4-7-1 Gakuen Musashi-Murayama,
            Tokyo 208-0011, Japan
COMMENT     ##Assembly-Data-START##
            Sequencing Technology :: Sanger dideoxy sequencing
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..7491
                     /organism="Norovirus
                     GII/Hu/JP/2002/GII.P12_GII.13/Saitama/T80"
                     /mol_type="genomic RNA"
                     /isolate="Saitama/T80"
                     /host="Homo sapiens"
                     /db_xref="taxon:1529915"
                     /country="Japan"
                     /collection_date="2002"
                     /note="genotype: GII.P12_GII.13"
     CDS             5..5104
                     /codon_start=1
                     /product="polyprotein"
                     /protein_id="AII73716.1"
                     /translation="MKMASNDASAVAAANSNNDIAKSSSDGVLSSMAVTFKRALGARP
                     KQPPPREIPQRPPRPPTPELVKKIPPPPPNGEDEPVVSYSVKDGVSGLPELITVRQPD
                     EVNTAFSVPPLNQRENRDAQEPLTGTILEMWDGEIYHYGLYVERGLVLGVHKPPAAIS
                     LAKVELTPLSLFWRPVYTPQYLISPDTLRRLHGESFPYTAFDNNCYAFCCWVLDLNDS
                     WLSRRMIQRTTGFFRPYQDWNRKPLPTMDDSKLKKVANVFLCALSSLFTRPIKDIIGK
                     LRPLNILNILASCDWTFAGIVESLILLAELFGVFWTPPDVSAMIAPLLGDYELQGPED
                     LAVELVPIVMGGIGLVLGFTKEKIGKMLSSAASTLRACKDLGAYGLEILKLVMKWFFP
                     KKEEANELAMVRSIEDAVLDLEAIENNHMTALLKDKDSLATYMRTLDLEEEKARKLST
                     KSASPDIVGTINALLARIAAARSLVHRAKEELSSRPRPVVVMISGRPGIGKTHLAREL
                     AKRIAASLTGDQRVGLIPRNGVDHWDAYKGERVVLWDDYGMSNPIHDALRLQELADTC
                     PLTLNCDRIENKGKVFDSDAIIITTNLANPAPLDYVNFEACSRRIDFLVYADAPEVEK
                     AKRDFPGQPDMWKNAFSPDFSHIKLTLAPQGGFDKNGNTPHGKGVMKTLTTGSLIARA
                     SGLLHERLDEYELQGPTPTTFNFDRNKVLAFRQLAAENRYGLMDTMRVGRQLKDVRTM
                     PELKQALKNISIKRCQIVYSGCTYTLESDGKGDVKVDRVQSATVQTNNELAGALHHLR
                     CAKIRYYVKCVQEALYSIIQIAGAAFVTTRIVKRMNIQDLWSKPQVEDTEETTNKNGC
                     PEPKDDEEFVVSSDDIKTEGKKGKNKSGRGKKHTAFSSKGLSDEEYDEYKRIREERNG
                     KYSIEEYLQDRDKYYEEVAIARATEEDFCEEEEAKIRQRIFRPTRKQRKEERASLGLV
                     TGSEIRKRNPDDFKPKGKLWADDDRSVDYNERINFEAPPSIWSRIVNFGSGWGFWVSP
                     SLFITSTHVIPHGAQEFFGVSIKQIQIHKSGEFCRLRFPKPIRTDVTGMILEEGAPEG
                     TVATLLIKRPTGELMPLAARMGTHATMKIQGRTVGGQMGMLLTGSNAKSMDLGTTPGD
                     CGCPYIYKRGNDYVVIGVHTAAARGGNTVICATQGSEGEATLEGGDSKGTYCGAPILG
                     PGSAPKLSTKTKFWRSSTAPLPPGTYEPAYLGGKDPRVKGGPSLQQVMRDQLKPFTEP
                     RGKPPKPSVLEAAKKTIINVLEQTIDPPQKWSFAQACASLDKTTSSGHPHHMRKNDCW
                     NGESFTGKLADQASKANLMYEEGKNMTPVYTGALKDELVKTDKIYGKIKKRLLWGSDL
                     ATMIRCARAFGGLMDEFKAHCVTLPVRVGMNMNEDGPIIFERHSRYKYHYDADYSRWD
                     STQQRAVLAAALEIMVKFSPEPHLAQKVAEDLLSPSVMDVGDFKISINEGLPSGVPCT
                     SQWNSIAHWLLTLCALSEVTNLSPDIIQANSLFSFYGDDEIVSTDVKLDPEKLTAKLK
                     EYGLKPTRPDKTEGPLVISEDLNGLTFLRRTVTRDPAGWFGKLEQSSILRQMYWTRGP
                     NHEDPSETMIPHSQRPIQLMSLLGEAALHGPAFYSKISKLVIAELKEGGMDFYVPRQE
                     PMFRWMRFSDLSTWEGDRNLAPSFVNEDGVE"
     gene            5085..6713
                     /gene="VP1"
     CDS             5085..6713
                     /gene="VP1"
                     /codon_start=1
                     /product="VP1"
                     /protein_id="AII73717.1"
                     /translation="MKMASNDAAPSNDGAASLVPEGINETMPLEPVAGASIAAPVAGQ
                     TNIIDPWIRTNFVQAPNGEFTVSPRNSPGEILLNLELGPDLNPYLAHLSRMYNGYAGG
                     VEVQVLLAGNAFTAGKILFAAIPPNFPVDMISPAQITMLPHLIVDVRTLEPIMIPLPD
                     VRNVFYHFNNQPQPRMRLVAMLYTPLRSNGSGDDVFTVSCRVLTRPTPDFEFIYLVPP
                     SVESKTKPFTLPILTISELTNSRFPIPIEQLYTAPNETNVVQCQNGRCTLDGELQGTT
                     QLLSSAVCSYRGRTVANNGDNWDQNLLQLTYPNGASYDPTDEVPAPLGTQDFSGMLYG
                     VLTQDNVNVSTGEAKNAKGIYISTTSGKFTPKIGSIGLHSITEHVHPNQQSRFTPVGV
                     AVNENTPFQQWVLPHYAGSLALNTNLAPAVAPTFPGEQLLFFRSRVPCVQGLQGQDAF
                     IDCLLPQEWVNHFYQEAAPSQADVALIRYVNPDTGRTLFEAKLHRSGFITVSHTGAYP
                     LVVPPNGHFRFDSWVNQFYSLAPMGTGNGRRRIQ"
     gene            6713..7447
                     /gene="VP2"
     CDS             6713..7447
                     /gene="VP2"
                     /codon_start=1
                     /product="VP2"
                     /protein_id="AII73718.1"
                     /translation="MAGAFIAGLAGDMLTSAVSSLTSAGANAINQKLNFDYNKQLQNA
                     SFQHDKEMLQAQIDATKKLQSEMIAIKHGVLTAGGFSPADAARGAVNAPMTRVLDWSG
                     TRYYAPNSVQTTSYSGQFTPSPVHRVQVKSSSNSSQRTAAPSSIRSLSTQSTSVTGST
                     SLGGSSATSSSSRTADWVQQQRALSPYMHGALQTAYVTPPSSRASSVSSVSTVPKGVL
                     DSWTPVFNTRRQPLFAHLRKRGESQA"
ORIGIN      
        1 gtgaatgaag atggcgtcta acgacgcttc cgctgtcgct gctgccaaca gcaacaacga
       61 catcgcaaaa tcttcaagtg acggagtgct ttctagcatg gctgtcactt ttaaacgagc
      121 cctcggggcg cggcctaaac agcctccccc gagggaaata ccacagagac ccccacgacc
      181 acccacacca gaactggtca aaaagatccc tcctcccccg cccaacgggg aggatgaacc
      241 agtggtttct tatagcgtca aagatggtgt ttccggcttg cctgagctta tcactgtcag
      301 gcagccggat gaagtcaaca cggcgttcag tgttccccca ctcaaccaaa gggagaatag
      361 ggacgcccag gaaccactaa ctggaacaat tctggaaatg tgggacgggg agatctacca
      421 ttacggcctg tatgtggaac gaggtctagt acttggcgtg cacaaaccac cggctgccat
      481 cagcctcgcc aaggttgaac taacaccact ctctctgttt tggaggccag tgtacacacc
      541 tcagtatctc atctctccag acactctcag gaggctgcac ggagaatcgt tcccctatac
      601 ggcctttgac aacaattgct atgccttctg ttgttgggtc ctggacctaa atgactcgtg
      661 gttgagtagg agaatgattc agaggacaac tggtttcttt aggccctacc aagactggaa
      721 taggaaaccc cttcctacca tggatgattc caagttgaag aaggtagcta acgtgttcct
      781 gtgcgcgctt tcttcactat tcaccaggcc catcaaagac ataataggga agctgagacc
      841 tcttaacatc cttaacatct tggcctcatg tgattggact tttgcaggca tagtggaatc
      901 cttgatactc ttggcagagc tctttggagt tttctggaca cccccagatg tgtctgcgat
      961 gatcgccccc ttactgggtg actacgagct gcaggggccc gaggaccttg cagtggaact
     1021 cgtcccaata gtgatggggg ggattggttt ggtgctagga tttaccaaag agaagattgg
     1081 gaaaatgttg tcatctgctg catccacctt aagagcttgc aaagaccttg gtgcatacgg
     1141 gctggaaatc ttaaaattag tcatgaagtg gttcttccca aagaaagagg aagcaaatga
     1201 gctggctatg gtgagatcca tcgaggacgc ggtgctggac ctcgaggcaa ttgagaacaa
     1261 ccacatgact gcccttctta aagacaaaga tagcctggca acctacatga gaaccctcga
     1321 cctcgaggag gagaaggcca ggaagctctc aaccaagtct gcttcacctg atatcgtggg
     1381 tacaatcaac gctcttctgg cgagaatcgc cgctgcgcgt tccctggtgc atcgggcgaa
     1441 ggaggagctc tctagcagac caagacctgt tgttgtgatg atatcaggca gaccagggat
     1501 agggaaaacc caccttgcca gggaattggc caagagaatt gcagcttccc tcacagggga
     1561 ccagcgtgtg ggtctcatcc ctcgcaatgg cgttgaccat tgggacgcat acaagggaga
     1621 aagagtcgtc ctgtgggacg attatggaat gagtaatccc atccatgatg ccctcagatt
     1681 gcaagaactt gctgacactt gccccctcac gctaaattgt gacaggattg agaataaagg
     1741 aaaggtattt gacagtgatg ccataatcat caccactaac ctggccaacc cagcaccact
     1801 ggactatgtt aactttgaag catgctcgag gcgcattgac ttcctcgtgt atgcagatgc
     1861 ccctgaggtc gaaaaggcaa aacgtgactt cccaggtcaa cctgatatgt ggaagaacgc
     1921 ttttagtcct gacttctcac acataaaact gacgctggct ccgcagggag gcttcgataa
     1981 gaatggaaac accccacatg ggaaaggcgt catgaaaact ctcaccactg gctctctcat
     2041 cgcccgagca tcagggctac tccatgagag gttggatgag tacgagctgc agggcccaac
     2101 ccccaccacc ttcaacttcg accgcaacaa ggtgcttgct tttagacagc ttgctgctga
     2161 aaacaggtac gggttaatgg acacaatgag agttggcaga caactcaagg atgtcaggac
     2221 catgccagag ctcaaacagg cactcaagaa tatctcaatc aagaggtgtc agatagtgta
     2281 cagtggctgc acctacacgc ttgaatctga tggcaagggt gacgtgaaag ttgatagagt
     2341 tcagagcgcc actgtgcaga ccaacaatga gctggctggt gccctacacc atctaaggtg
     2401 tgccaaaatt agatactatg tcaagtgtgt tcaggaggcc ctgtactcca tcatccaaat
     2461 tgctggtgct gcatttgtca ccacgcgcat cgtcaagcgc atgaatatac aagatctttg
     2521 gtccaaacca caggtggaag atacagagga gactaccaac aagaatgggt gcccagaacc
     2581 caaagatgat gaagagtttg tcgtctcatc cgacgacatc aaaactgagg gcaagaaagg
     2641 gaagaacaaa tctggccgtg gcaagaagca tacagcattc tcaagtaaag gtctcagtga
     2701 tgaagagtac gatgagtaca agagaatcag agaagaaaga aacggcaaat actccataga
     2761 agagtacctt caggacagag acaagtatta tgaggaggtg gccatcgcca gggcgaccga
     2821 agaggacttc tgtgaggaag aagaagccaa gatccgacaa aggattttca ggccaacaag
     2881 gaaacaacgc aaggaggaga gagcctctct cggcctggtc acaggctctg aaatcagaaa
     2941 aagaaaccca gacgatttca agcctaaagg gaagctgtgg gctgatgacg acaggagtgt
     3001 tgactacaac gagagaatca attttgaagc cccaccaagc atctggtcga ggatagtcaa
     3061 ctttggctca ggttggggct tttgggtctc ccccagtctg ttcataacat caactcatgt
     3121 cataccccat ggcgcacagg agttctttgg ggtttctatc aaacagattc agatacacaa
     3181 atcgggtgaa ttctgtcgct tgaggtttcc aaaaccaatc aggactgatg tgacaggcat
     3241 gatcttagaa gaaggtgcgc ccgaagggac cgtggccaca ttactcatca agaggccaac
     3301 tggggaactc atgcccttgg cggccagaat gggaacccat gcaaccatga agatccaagg
     3361 gcgcactgtt ggaggtcaaa tgggcatgct tctaacagga tccaacgcca agagtatgga
     3421 tctaggcacc acaccgggtg actgtggttg tccctacatt tacaagaggg ggaatgacta
     3481 cgtagtcatt ggagtccaca cggctgccgc ccgtggagga aacactgtca tatgtgccac
     3541 ccaggggagt gagggagaag ccacacttga aggtggtgac agcaagggaa cctactgtgg
     3601 tgcaccaatc ttaggtccag gcagtgcccc aaaactcagt accaagacta aattttggag
     3661 atcatccaca gcaccactcc cacctggtac ctatgaacca gcctaccttg gcggcaagga
     3721 ccccagagtc aagggtggtc cttcattgca acaagttatg agggaccagc tgaaaccatt
     3781 cactgagccc aggggcaaac caccaaaacc aagtgtgtta gaggctgcca agaaaaccat
     3841 catcaatgtt cttgagcaaa caattgatcc acctcaaaaa tggtcattcg cgcaagcatg
     3901 cgcatccctc gacaagacca cctctagtgg tcacccgcac cacatgcgga aaaacgactg
     3961 ctggaacggg gagtccttca caggcaaatt ggcagaccag gcttccaagg ctaacctgat
     4021 gtacgaagag ggaaagaaca tgaccccagt ttacacgggt gcgcttaagg acgagctggt
     4081 caagactgac aaaatttatg gcaaaatcaa aaagaggctt ctctggggct cggacctggc
     4141 gaccatgatc cggtgcgctc gggcttttgg gggcctgatg gatgaattta aggcacattg
     4201 tgtcacactc cccgtcagag tgggtatgaa tatgaatgag gatggtccta tcatctttga
     4261 aagacactcc agatacaaat atcactatga tgctgattac tctcggtggg actcaacgca
     4321 acagcgggcc gtattagcag cagccttaga aatcatggtt aagttctccc cagaacctca
     4381 tctggcccaa aaggttgcag aagaccttct ctctcccagc gtgatggatg taggtgattt
     4441 caaaatatca atcaatgagg gcctcccctc cggggtaccc tgcacctccc aatggaattc
     4501 catcgcccac tggcttctca ccctctgtgc actttctgag gtcacaaacc tgtcccctga
     4561 cattatccag gccaattccc tcttttcctt ctatggtgat gatgaaattg tgagcacaga
     4621 cgtaaagctg gacccagaga agctgacagc aaaactcaag gaatacgggc tgaaaccaac
     4681 ccgccctgac aagactgagg ggccccttgt tatctctgag gacctgaatg gcttgacctt
     4741 cctgcggagg actgtgaccc gcgatccagc tggctggttt ggaaaactgg aacagagttc
     4801 aatacttagg caaatgtact ggactagggg ccctaatcat gaagacccat ctgaaacaat
     4861 gataccacac tcccaaagac ccatacaatt aatgtctttg ctgggcgagg ctgccctcca
     4921 cggcccagcg ttctacagca aaatcagcaa gttagttatt gcagaactaa aggaaggtgg
     4981 catggatttc tacgtgccca gacaagagcc aatgttcaga tggatgagat tctcagatct
     5041 gagcacgtgg gagggcgatc gcaatctggc tcccagtttt gtgaatgaag atggcgtcga
     5101 atgacgccgc tccatcaaat gatggtgcag ctagtctcgt accagagggc attaatgaga
     5161 ctatgccatt ggaacccgtt gctggtgcat ctattgctgc cccagtggcg ggacaaacca
     5221 acataattga cccctggata agaacaaatt ttgtacaagc ccctaatgga gagtttacag
     5281 tgtcaccaag aaattcccct ggagaaattt tattaaattt agaattagga ccagatctga
     5341 atccttattt ggcccatctt tcaagaatgt ataatggtta tgctggaggt gttgaggtgc
     5401 aagtgctcct tgctgggaac gcgttcacag caggtaagat attgtttgca gcaatcccac
     5461 ctaactttcc tgtagatatg attagcccag ctcaaattac tatgcttccc catttgattg
     5521 tagatgttag gactttggaa cctattatga tacccttgcc tgatgttagg aatgtgttct
     5581 atcattttaa taatcaacct caacctagaa tgagattagt ggctatgctc tacaccccat
     5641 tgaggtctaa tggttcaggg gatgatgtct tcactgtgtc ttgtagagtg ctaactaggc
     5701 caactcctga ttttgaattt atctatctgg tgcccccttc tgtagagtcc aaaactaaac
     5761 cattcacact accaatatta accatttctg aattgaccaa ctcccggttc cctattccaa
     5821 tcgagcaatt gtatacggct ccaaatgaga ccaatgttgt ccagtgtcag aatggcaggt
     5881 gcaccttaga tggagagctc cagggcacaa cccagctgtt gtcaagtgca gtttgctctt
     5941 acaggggcag gactgtggcc aataatgggg ataattggga ccaaaatttg ctccagctga
     6001 cctatccaaa tggtgcaagc tatgacccca ctgatgaagt gccggcacca ttgggcactc
     6061 aagattttag tgggatgttg tatggagtgt tgacccagga caatgtgaat gtgagcacag
     6121 gagaggccaa aaatgctaag ggaatataca tatccaccac tagtgggaaa tttaccccaa
     6181 aaattgggtc aattggattg cattcaataa ctgagcacgt gcaccccaac caacagtcgc
     6241 ggttcacccc cgttggagtc gccgtgaatg agaacacccc cttccagcaa tgggttctac
     6301 cacattatgc aggtagtctc gctctcaaca ccaatttggc acctgctgtt gccccgactt
     6361 tccctggtga gcaattgctg ttcttcaggt cccgtgtccc atgtgtccaa ggcctacagg
     6421 ggcaggatgc gttcatagat tgcctcctgc cccaagagtg ggtgaatcat ttttatcaag
     6481 aggcagcccc ttcccaagca gacgtcgccc ttattaggta tgtcaaccct gatactggtc
     6541 gcacgctgtt tgaagccaag ttgcatagat caggtttcat tactgtgtca catactggtg
     6601 cttaccctct tgtagtcccc ccaaatggtc attttaggtt tgattcttgg gttaatcaat
     6661 tttactcact cgcccccatg ggaactggca atgggcgtag aaggatccag taatggcagg
     6721 agcatttata gctggtttgg ccggtgacat gctgacttct gctgttagtt cactgacctc
     6781 tgcaggagcc aatgccatca atcagaaatt gaattttgat tacaacaaac aactccaaaa
     6841 tgcatccttc cagcatgata aggaaatgtt gcaggctcaa attgatgcca caaagaaact
     6901 tcaatctgaa atgattgcaa tcaagcatgg ggttttgacc gcgggcggct tttccccagc
     6961 tgatgcagct agaggggcag tcaatgcccc aatgactaga gtgctggatt ggtcagggac
     7021 acgttactat gctccaaatt ctgtgcaaac tactagctat tctggacaat tcaccccctc
     7081 gccagtccac cgggtgcagg tgaaatcttc ttctaattca tctcagcgga ccgcagctcc
     7141 aagcagcatc cgtagtctgt caactcaatc aacttctgta acaggctcta cctccctagg
     7201 ggggtcctct gcaacctcct ctagctctag gacagcagac tgggtacagc aacagagggc
     7261 tcttagtccg tacatgcatg gagccctgca gacggcatat gtcacaccgc cgtcaagcag
     7321 ggcctccagt gtgagctctg tctcaacagt gcccaaaggg gttttggact cctggacacc
     7381 tgtgtttaac acacgcaggc agccgctgtt tgcacacctc aggaagaggg gggagtcaca
     7441 ggcttagtga aaaggatgat taatgcttaa gtatgatttt attttccttt t
//