Typing tool

Complete norovirus genomes

AB541323  GII.4 Osaka
 GII.P31

Length: 7,509 | 3 CDS

ORF1: 1..5100
ORF2: 5081..6703
ORF3: 6703..7509
LOCUS       AB541323                7509 bp    RNA     linear   VRL 03-AUG-2010
DEFINITION  Norovirus Hu/GII-4/Osaka3/2007/JP genomic RNA, complete genome.
ACCESSION   AB541323
VERSION     AB541323.1
KEYWORDS    .
SOURCE      Norovirus Hu/GII-4/Osaka3/2007/JP
  ORGANISM  Norovirus Hu/GII-4/Osaka3/2007/JP
            Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
            Picornavirales; Caliciviridae; Norovirus.
REFERENCE   1
  AUTHORS   Motomura,K., Yokoyama,M., Ode,H., Nakamura,H., Mori,H., Kanda,T.,
            Oka,T., Katayama,K., Noda,M., Tanaka,T., Takeda,N. and Sato,H.
  CONSRTM   Norovirus Surveillance Group of Japan
  TITLE     Genome Recombination for Independent and Concurrent Evolution of
            Non-structural and Capsid Proteins of Norovirus GII/4 in Humans
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 7509)
  AUTHORS   Motomura,K. and Sato,H.
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2010) Contact:Kazushi Motomura National Institute
            of Infectious Diseases, Center for Pathogen Genomics; Gakuen 4-7-1,
            Musashi-Murayama, Tokyo 208-0011, Japan
COMMENT     These sequences were determined at our laboratory.
FEATURES             Location/Qualifiers
     source          1..7509
                     /organism="Norovirus Hu/GII-4/Osaka3/2007/JP"
                     /mol_type="genomic RNA"
                     /strain="Hu/GII-4/Osaka3/2007/JP"
                     /isolation_source="stool"
                     /db_xref="taxon:707506"
                     /country="Japan:Osaka"
     CDS             1..5100
                     /note="contains N-terminal NTPase 3A VPg 3Cpro and 3Dpol"
                     /codon_start=1
                     /product="polyprotein"
                     /protein_id="BAJ13899.1"
                     /translation="MKMASNDASAAAAANSNNDIAKSSSDGVLSNMAVTFKRALGARP
                     KQPPPKEIPPRPPRPPTPELVKKIPPPPPNGEEELVVSYSAKDGVSGLPELTTVKQPE
                     ETNTAFSVPPLNQRENRDAKEPLTGTIIEMWDGEIYHYGLYVERGLILGVHKPPAAIS
                     LAKVELTPLSLFWRPVYTPQYLISPDTLRRLHGESFPYTAFDNNCYAFCCWVLDLNDS
                     WLSRRMIQRTTGFFRPYQDWNRKPLPTMDDSKLKKVANIFLCTLSSLFTRPIKDIIGK
                     LKPLNILNILATCDWTFAGIVESLILMAELFGVFWTPPDVSAMIAPLLGDYELQGPED
                     LAVELVPIVMGGIGLVLGFTKEKIGKMLSSAASTLRACKDLGAYGLEILKLVMKWFFP
                     KKEEANELAMVRSIEDAVLDLEAIENNHMTTLLKDKDSLATYMRTLDLEEEKARKLST
                     KSASPDIVGTINSLLARIAAARSLVHRAKEELSSRPRPVVVMISGKPGIGKTHLAREL
                     AKKIAASLTGDQRVGLIPRNGVDHWDAYKGERVVLWDDYGMSNPIHDALRLQELADTC
                     PLTLNCDRIENKGKVFDSDAIIITTNLANPAPLDYVNFEACSRRIDFLVYAEAPEVEK
                     AKRDFPGQPDMWKNAFSPDFSHIKLSLAPQGGFDKNGNTPHGKGVMKTLTTGSLIARA
                     SGLLHERLDEYELQGPTLTTFNFDRNKILAFRQLAAENKYGLMDTMRVGKQLRDVKTM
                     PDLKQALKNVSIKKCQIVYGGSTYTLEADGKGSVKVDKVQSATVQTNNELAGALHHLR
                     CARIRYYVKCVQEALYSIIQIAGAAFVTTRITKRMNIQNLWSKPQVEDTEEAASKDGC
                     SRPKDDEEFVVSSDDIKTEGKKGKNKTGRGKKHTAFSSKGLSDEEYDEYKRIREERNG
                     KYSIEEYLQDRDKYYEEVAIARATEEDFCEEEEAKIRQRIFRPTRKQRKEERASLGLV
                     TGSEIRKRNPEDFKPKGKLWADDDRSVDYNEKLNFEAPPSIWSRIVNFGSGWGFWVSP
                     SLFITSTHVIPQGTKEFFGVPIKQIQIHKSGEFCRLRFPKPIRTDVTGMILEEGAPEG
                     TVATLLIKRPTGELMPLAARMGTHATMKIQGRTVGGQMGMLLTGSNAKSMDLGTTPGD
                     CGCPYIYKRGNDYVVIGVHTAAARGGNTVICATQGSEGEATLEGGDNKGTYCGAPILG
                     PGSAPKLSTKTKFWRSSTTPLPPGTYEPAYLGGKDPRVKGGPSLQQVMRDQLKPFTEP
                     RGKPPRPSVLEAAKKTIINVLEQTIDPPQKWSFAQACASLDKTTSSGHPHHMRKNDCW
                     NGESFTGKLADQASKANLMFEEGKNMTPVYTGALKDELVKTDKIYGKIKKRLLWGSDL
                     ATMIRCARAFGGLMDELKAHCVTLPIRVGMNMNEDGPIIFEKHSRYKYHYDADYSRWD
                     STQQRDVLAAALEIMVKFSPEPHLAQIVAEDLLSPSVMDVGDFQISISEGLPSGVPCT
                     SQWNSIAHWLLTLCALSEVTDLSPDIIQANSLFSFYGDDEIVSTDIKLDPEKLTGKLK
                     EYGLKPTRPDKTEGPLVISEDLDGLTFLRRTVTRDPAGWFGKLEQSSILRQMYWTRGP
                     NHEDPSETMIPHSQRPIQLMSLLGEAALHGPAFYSKISKLVIAELKEGGMDFYVPRQE
                     PMFRWMRFSDLSTWEGDRNLAPSFVNEDGVE"
     CDS             5081..6703
                     /codon_start=1
                     /product="VP1"
                     /protein_id="BAJ13900.1"
                     /translation="MKMASNDANPSDGSTANLVPEVNNEVMALEPVVGAAIAAPVAGQ
                     QNVIDPWIRNNFVQAPGGEFTVSPRNAPGEILWSAPLGPDLNPYLSHLARMYNGYAGG
                     FEVQVILAGNAFTAGKIIFAAVPPNFPTEGLSPSQVTMFPHIIVDVRQLEPVLIPLPD
                     VRNNFYHYNQSNDPTIKLIAMLYTPLRANNAGDDVFTVSCRVLTRPSPDFDFIFLVPP
                     TVESRTKPFTVPILTVEEMTNSRFPIPLERLYTGPSSAFVVQPQNGRCTTDGVLLGTT
                     QLSAVNICTFRGDVTHIAGSRNYTMNLASQNWNNYDPTEEIPAPLGTPDFVGKIQGML
                     TQTTRSDGSTRGHKATVLTGSADFAPKLGRVQFATDTDNDFESGQNTKFTPVGVIQDG
                     STTHRNEPQQWVLPNYSGRTGHNVHLAPAVAPTYPGEQLLFFRSTMPGCSGYPNMDLD
                     CLLPQEWVQHFYQEAAPAQSDVALLRFVNPDTGRVLFECKLHKSGYVTVAHTGQHDLV
                     IPPNGYFRFDSWVNQFYTLAPMGNGTGRRRAV"
     CDS             6703..7509
                     /codon_start=1
                     /product="VP2"
                     /protein_id="BAJ13901.1"
                     /translation="MAGAFFAGLASDVLGSGLGSLINAGAGAINQKIDFENNRKLQQA
                     SFQFSSNLQQASFQHDKEMLQAQIEATKKLQQEMMKVKQAMLLEGGFSETDAARGAIN
                     APMTKALDWSGTRYWAPDARTTTYNAGRFSTPQPSGALSGRINPRTPTPARGSSSISS
                     NASTATSVYSNQTVSTRLGSTAGSGTNVSSLPSTARTRSWVEDQNRNLSPFMRGAHNI
                     SFVTPPSSRSSSQGTVSTVPKEVLDSWTGAFNTRRQPLFAHIRRRGESRV"
ORIGIN      
        1 atgaagatgg cgtctaacga cgcttccgct gccgctgctg ccaacagcaa caacgacatc
       61 gcaaaatctt caagtgacgg tgtgctatct aacatggctg tcacttttaa acgagccctc
      121 ggggcgcggc ctaaacagcc gcccccgaag gaaataccac ccagaccccc acgaccaccc
      181 acaccagaat tggtcaaaaa gatccctcct cccccaccca acggggagga agaactagtg
      241 gtttcctaca gcgccaaaga tggcgtttcc ggcctgcctg agctcaccac tgtcaaacaa
      301 ccggaagaaa ccaacacggc gttcagtgtt cccccactca accagaggga gaatagggac
      361 gccaaggaac cactaactgg aacaattatt gagatgtggg atggagaaat ataccactac
      421 ggcctgtatg tggaacgagg tcttatactt ggtgtgcaca agccaccggc agccatcagc
      481 cttgccaagg tcgagctaac accactctct ttgttctgga gacctgtata caccccccag
      541 tatctcatct ctccagacac tcttaggaga ctgcatggag agtcattccc ctacactgca
      601 tttgacaaca attgctacgc cttctgttgt tgggtattag acctaaacga ctcatggcta
      661 agcaggagaa tgattcagag gacaacaggt ttcttcaggc cataccagga ttggaacagg
      721 aaaccccttc ccactatgga tgattccaaa ttaaagaagg tggctaacat attcttgtgc
      781 actttgtctt cactattcac caggcccatt aaggacataa tagggaagtt gaaacctctt
      841 aacattctca acattctggc tacgtgcgat tggaccttcg caggcatagt ggagtccttg
      901 atactcatgg cagaactctt tggagttttc tggacacccc cagatgtgtc tgcgatgatc
      961 gcccctttac taggtgatta cgagctgcaa ggacctgagg accttgcagt agaactagtc
     1021 ccaatagtga tggggggaat aggtttggtg ctaggattta ccaaagagaa aattggaaag
     1081 atgttgtcat ctgctgcatc cactttgaga gcctgtaaag accttggtgc atacggactg
     1141 gaaattttga aattggtcat gaaatggttc tttccaaaga aagaggaagc aaacgaattg
     1201 gctatggtga ggtccatcga ggatgcggtg ctggacctcg aggcaattga aaacaatcac
     1261 atgaccaccc tgctcaaaga caaagacagc ttggcaacct acatgagaac ccttgacctt
     1321 gaggaggaga aagccagaaa actctcaacc aaatctgctt cacccgatat tgtgggcaca
     1381 atcaactctc ttctggcaag aatcgctgct gcacgctccc tagtgcatcg ggcgaaagaa
     1441 gaactctcca gcaggccgag acctgttgtt gtgatgatat cgggaaaacc agggataggg
     1501 aaaactcacc ttgccaggga gctggccaag aagatcgcag cctccctcac aggggaccag
     1561 cgcgtgggtc tcatcccgcg caatggtgtc gaccattggg acgcgtacaa gggagaaagg
     1621 gttgtcctgt gggacgacta tggaatgagt aaccccatcc atgatgccct caggttgcag
     1681 gaacttgctg acacttgccc cctcacgcta aattgtgaca ggattgagaa caaagggaaa
     1741 gtctttgaca gtgatgccat aattatcacc accaatctgg ccaacccagc accactggat
     1801 tatgtcaact ttgaagcgtg ctcgaggcgc attgacttcc tcgtgtacgc agaagctcct
     1861 gaggtggaaa aagcaaagcg cgacttccca ggccaacctg acatgtggaa gaacgctttc
     1921 agtcctgact tctcgcacat aaaactgtca ttggctccac agggtggttt tgataagaac
     1981 ggcaacaccc cacatggaaa aggcgtcatg aagaccctca ctactggttc cctcatcgcc
     2041 cgagcatcag ggttactcca tgagaggcta gatgaatatg aactgcaagg cccaactctc
     2101 accactttca actttgaccg caacaagatc cttgctttca gacagcttgc tgctgaaaac
     2161 aagtatgggc tcatggacac aatgagagtt ggaaaacagc tcagggatgt caagaccatg
     2221 ccagacctca aacaagcact caagaatgtc tcgatcaaaa agtgccagat agtgtacggt
     2281 ggtagcacct acacacttga ggccgatggc aagggcagtg tgaaagttga caaagtgcaa
     2341 agtgccactg tgcaaaccaa caacgaacta gccggtgccc tacaccacct aaggtgcgcc
     2401 agaattagat actatgtcaa gtgtgtccag gaggcactgt actccattat ccaaattgct
     2461 ggggctgcat ttgtcaccac gcgcattact aagcgcatga acatacagaa cctctggtcc
     2521 aagccacagg tggaggacac agaagaggcg gccagcaaag atggttgctc aagacccaaa
     2581 gatgatgaag agtttgtcgt ttcatccgac gacatcaaaa ctgagggcaa gaaagggaaa
     2641 aacaagactg gccgtggtaa gaagcacaca gccttctcaa gcaaagggct cagtgatgag
     2701 gagtatgatg agtacaagag aatcagagaa gagaggaatg gcaagtactc catagaagag
     2761 taccttcagg acagagacaa gtactatgag gaggtggcca ttgccagggc aaccgaagag
     2821 gacttctgtg aagaagaaga ggccaaaatc cggcagagaa ttttcagacc aacaaggaaa
     2881 caacgcaaag aagagagggc ctctctcggc ttggtcacag gctctgaaat caggaagaga
     2941 aacccagaag acttcaaacc caagggaaaa ctgtgggccg acgatgacag aagtgttgac
     3001 tacaatgaga aactcaactt tgaggcccca ccaagcatct ggtcgcggat agtcaacttt
     3061 ggttcaggtt ggggcttctg ggtctccccc agtctgttta taacatcaac acatgtcata
     3121 ccccagggta caaaagagtt cttcggagtc cccatcaaac aaatccagat acacaaatca
     3181 ggtgaattct gccggttaag attcccaaaa ccaatcagaa ctgatgtgac gggcatgatt
     3241 ctagaagaag gtgcgcccga aggaaccgtg gccacactac tcatcaagag accaactggg
     3301 gaactcatgc ctctggcagc tagaatggga acccatgcaa ccatgaagat tcaagggcgc
     3361 acagttggag gacaaatggg catgctcctg acaggatcca acgccaagag tatggaccta
     3421 ggcacaacac cgggtgactg cggctgtccc tacatctaca agagggggaa tgactacgtg
     3481 gtcataggag tccacacggc cgctgcccgt ggaggaaaca ctgtcatatg tgccacccag
     3541 gggagtgaag gggaagccac acttgaaggt ggtgacaata aaggaacata ctgtggtgca
     3601 ccaatcttgg gcccagggag tgccccaaaa ctcagtacta agactaagtt ttggagatca
     3661 tccacaacac cactcccacc tggcacctac gaaccagcct acctcggtgg caaggacccc
     3721 agagtcaaag gtggcccttc attgcaacaa gttatgaggg accagctaaa accattcaca
     3781 gaacccagag gtaaaccacc aagaccaagt gtgttggaag ctgccaagaa aaccatcatc
     3841 aatgttcttg agcaaacaat tgacccaccc caaaaatggt cattcgcgca agcttgcgca
     3901 tctcttgaca aaaccacttc cagcggccat ccgcaccata tgcggaagaa tgactgttgg
     3961 aacggggagt cattcacagg aaaattggca gatcaggcct ccaaggccaa tctaatgttt
     4021 gaagagggga agaacatgac tccagtctac acaggtgcac ttaaggatga actggtaaag
     4081 actgacaaaa tttatggtaa gatcaagaag aggcttctgt ggggctcaga cctggcgact
     4141 atgatacggt gcgcccgagc ttttggaggc cttatggatg aactcaaggc acattgtgtc
     4201 accctaccta tcagagttgg tatgaacatg aatgaggatg gccccatcat ctttgagaaa
     4261 cactccagat ataaatatca ttatgatgct gattactccc ggtgggactc aacacaacaa
     4321 agggatgtgc tagcagcagc cctagaaatc atggttaaat tctctccaga accacacctg
     4381 gctcaaatag ttgcagaaga cctactttcc cctagtgtaa tggatgtggg tgactttcaa
     4441 atatcaataa gtgagggact cccctctggg gtgccttgca cctcccaatg gaattccatc
     4501 gcccattggc tcctcactct ttgtgcactc tctgaagtca cggacctgtc ccctgacatc
     4561 atccaggcca attccctttt ctccttctat ggtgatgatg agattgtgag tacagacata
     4621 aagttggatc cagagaaact gacgggaaaa ctcaaggagt acgggctgaa accaacccgc
     4681 cccgacaaaa ctgaaggacc cctcgttatc tctgaagatc tggatggcct gacattcctg
     4741 cggaggactg tgacccgtga cccagctggt tggtttggaa aattggaaca aagctcaatt
     4801 ctcaggcaaa tgtactggac caggggcccc aaccatgaag atccatctga aacaatgata
     4861 ccacactccc aaagacccat acaattgatg tctctgctgg gcgaggctgc actccacggc
     4921 ccggcattct atagtaaaat tagtaagtta gtcattgcag agttgaagga aggtggcatg
     4981 gatttttacg tgcccagaca agagccaatg ttcagatgga tgagattctc agatctgagc
     5041 acgtgggagg gcgatcgcaa tctggctccc agttttgtga atgaagatgg cgtcgaatga
     5101 cgccaaccca tctgatgggt ccacagccaa cctcgtccca gaggtcaaca atgaggtaat
     5161 ggctttggag cccgttgtag gtgccgctat tgcggcgcct gtagcgggcc aacaaaatgt
     5221 aattgacccc tggattagaa ataattttgt acaagcccct ggtggagagt ttacagtgtc
     5281 ccccagaaat gctccaggtg agatactatg gagtgcgccc ttgggccctg atttgaaccc
     5341 ttacctttct catctggcca gaatgtataa tggttatgca ggtggttttg aagtgcaggt
     5401 aatcctcgcg gggaacgcgt tcaccgccgg aaaaatcata tttgcagcag tcccacctaa
     5461 ctttccaact gaaggcttga gccctagcca ggttactatg ttcccccata taatagtaga
     5521 tgttaggcaa ttggaacctg tgttgatccc cttacctgat gttaggaata acttctatca
     5581 ctacaaccag tcaaatgacc ctaccattaa attgatagca atgttgtaca caccacttag
     5641 ggccaataat gctggggatg atgtcttcac agtctcttgt cgagtcctca cgagaccatc
     5701 ccctgacttt gacttcatat ttctggtacc accaacagtt gaatcaagaa ccaaaccatt
     5761 taccgttcca atcttaactg ttgaggaaat gaccaattca agattcccca ttcctttgga
     5821 aaggttgtac acgggtccca gcagtgcttt tgttgtccag ccacaaaacg gcaggtgcac
     5881 gactgatggc gtgctcttag gtaccaccca gctgtctgct gtcaacatct gcacctttag
     5941 aggggatgtc actcacattg caggctctcg caattataca atgaatttgg cctctcaaaa
     6001 ttggaacaac tatgatccaa cagaagaaat cccagccccc ctgggcaccc cagatttcgt
     6061 gggaaagatc caaggcatgc tcacccaaac cacaagaagt gatggctcga cccgcggcca
     6121 caaggccaca gtgctcactg ggagtgccga cttcgcccca aaattgggca gagttcaatt
     6181 cgccactgac acagacaacg atttcgaatc tggccaaaac acgaaattca ccccagttgg
     6241 cgtcatccag gatggctcca ctacccaccg aaatgaacct caacaatggg tactcccaaa
     6301 ttactcaggt agaactggtc ataatgtgca tctagcccct gctgttgccc ccacttaccc
     6361 gggtgagcaa ctccttttct tcaggtccac tatgcccgga tgtagcgggt accccaacat
     6421 ggatctagat tgcttgctcc cccaggagtg ggtgcagcac ttctaccaag aagcagctcc
     6481 agcacaatct gatgtggctc tgctaagatt tgtgaatcca gacacaggta gggttctctt
     6541 tgagtgcaag ctccataaat caggatatgt cacagtggct cacactggtc agcatgattt
     6601 ggttattccc cccaatggtt attttagatt tgattcctgg gttaatcaat tctacacact
     6661 tgcccccatg ggaaatggga cggggcgtag acgtgctgta taatggctgg agctttcttt
     6721 gctggattgg catctgatgt ccttggctct ggacttggtt ccctaatcaa tgctggggct
     6781 ggggctatca accaaaagat tgattttgaa aataacagaa aactgcagca agcttctttc
     6841 cagtttagca gcaatctgca acaggcttcc tttcaacatg ataaagagat gctccaagca
     6901 caaattgagg ccactaaaaa gttgcaacag gaaatgatga aagtcaaaca ggcaatgctc
     6961 ttagaaggtg gattctctga aacagatgca gcccgtgggg caatcaacgc ccccatgaca
     7021 aaggctttgg actggagcgg aacaaggtac tgggcccctg atgctaggac tacaacatac
     7081 aatgcaggcc gcttctccac ccctcaacct tcgggggcat tgtcaggaag aatcaatccc
     7141 aggactccca cccccgctcg gggttcctct agcatatctt ctaatgcttc tactgctact
     7201 tctgtatatt caaatcaaac tgtttcaacg agacttggtt ctacagctgg ttctggcacc
     7261 aatgtctcga gtctcccgtc aactgcaagg actaggagtt gggttgagga tcaaaacaga
     7321 aatctgtcac ctttcatgag gggggctcac aacatatcgt ttgtcacccc accatctagc
     7381 agatcctcta gccagggcac agtctcaacc gtgcctaaag aagttttgga ctcctggact
     7441 ggcgctttca acacgcgcag gcagcctctc ttcgctcaca ttcgtaggcg aggggagtca
     7501 cgggtgtaa
//