Typing tool

Complete norovirus genomes

AB541267  GII.4 Yerseke
 GII.P4 Yerseke

Length: 7,509 | 3 CDS

ORF1: 1..5100
ORF2: 5081..6703
ORF3: 6703..7509
LOCUS       AB541267                7509 bp    RNA     linear   VRL 03-AUG-2010
DEFINITION  Norovirus Hu/GII-4/Hokkaido5/2007/JP genomic RNA, complete genome.
ACCESSION   AB541267
VERSION     AB541267.1
KEYWORDS    .
SOURCE      Norovirus Hu/GII-4/Hokkaido5/2007/JP
  ORGANISM  Norovirus Hu/GII-4/Hokkaido5/2007/JP
            Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
            Picornavirales; Caliciviridae; Norovirus.
REFERENCE   1
  AUTHORS   Motomura,K., Yokoyama,M., Ode,H., Nakamura,H., Mori,H., Kanda,T.,
            Oka,T., Katayama,K., Noda,M., Tanaka,T., Takeda,N. and Sato,H.
  CONSRTM   Norovirus Surveillance Group of Japan
  TITLE     Genome Recombination for Independent and Concurrent Evolution of
            Non-structural and Capsid Proteins of Norovirus GII/4 in Humans
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 7509)
  AUTHORS   Motomura,K. and Sato,H.
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2010) Contact:Kazushi Motomura National Institute
            of Infectious Diseases, Center for Pathogen Genomics; Gakuen 4-7-1,
            Musashi-Murayama, Tokyo 208-0011, Japan
COMMENT     These sequences were determined at our laboratory.
FEATURES             Location/Qualifiers
     source          1..7509
                     /organism="Norovirus Hu/GII-4/Hokkaido5/2007/JP"
                     /mol_type="genomic RNA"
                     /strain="Hu/GII-4/Hokkaido5/2007/JP"
                     /isolation_source="stool"
                     /db_xref="taxon:707450"
                     /country="Japan:Hokkaido"
     CDS             1..5100
                     /note="contains N-terminal NTPase 3A VPg 3Cpro and 3Dpol"
                     /codon_start=1
                     /product="polyprotein"
                     /protein_id="BAJ13731.1"
                     /translation="MKMASNDASAAAVANSNNDTAKSSSDGVLSSMAVTFKRALGARP
                     KQPPPREIQQRPPRPPTPELVKNIPPPPPNGEDEIVVSYSVKDGVSGLPDLSTVRQPE
                     ESNTAFSVPPLNQRENRDAKEPLTGTILEMWDGEIYHYGLYVERGLVLGVHKPPAAIS
                     LARVELAPLSLYWRPVYTPQYLISPDTLKKLHGETFPYTAFDNNCYAFCCWVLDLNDS
                     WLSRRMIQRTTGFFRPYQDWNRKPLPTMDDSKLKKVANIFLCALSSLFTRPIKDIIGK
                     LRPLNILNILASCDWTFAGIVESLILLAELFGVFWTPPDVSAMIAPLLGDYELQGPED
                     LAVELVPVVMGGIGLVLGFTKEKIGKMLSSAASTLRACKDLGAYGLEILKLVMKWFFP
                     KKEEANELAIVRSIEDAVLDLEAIENNHMTTLLKDKDSLATYMRTLDLEEEKARKLST
                     KSASPDIVGTINALLARIAAARSLVHRAKEELSSRPRPVVLMISGRPGIGKTHLAREM
                     AKRIAASLTGDQRVGLVPRNGVDHWDAYKGERVVLWDDYGMSNPIHDALRLQELADTC
                     PLTLNCDRIENKGKVFDSDVIIITTNLANPAPLDYVNFEACSRRIDFLVYAEAPEVEK
                     AKRDFPGQPDMWKNAFSSDFSHIKLTLAPQGGFDKNGNTPHGRGVMKTLTTGSLIARA
                     SGLLHERLDEFELQGPTLTTFNFDRNKVLAFRQLAAENKYGLMDTMRVGRQLKDVRTM
                     PELKQALKNTSIKRCQIVYSGCTYILESDGKGNVKVDRVQSASVQTNNELTGALHHLR
                     CARIRYYVKCVQEALYSIIQIAGAAFVTTRIVKRMNIQDLWSKPQVENTEETTSKDGC
                     PKPKDDGEFVISSDDIKTEGKKGKNKTGRGKKHTAFSSKGLSDEEYDEYKRIREERNG
                     KYSIEEYLQDRDKYYEEVAIARATEEDFCEEEEAKIRQRIFRPTRKQRKEERASLGLV
                     TGSEIRKRNPDDFKPKGKLWADDDRSVDYNEKLSFEAPPSIWSRIVNFGSGWGFWVSP
                     SLFITSTHVIPQGAKEFFGVPIKQIQVHKSGEFCRLRFPKPIRTDVTGMILEEGAPEG
                     TVVTLLIKRSTGELMPLAARMGTHATMKIQGRTVGGQMGMLLTGSNAKSMDLGTTPGD
                     CGCPYIYKRGNDYVVIGVHTAAARGGNTVICATQGSEGEATLEGGDNKGTYCGAPILG
                     PGSAPKLSTKTKFWRSSTASLPPGTYEPAYLGGKDPRVKGGPSLQQVMREQLKPFTEP
                     RGKPPKPSVLEAAKKTIINVLEQTIDPPEKWSFAQACASLDKTTSSGHPHHMRKNDCW
                     NGESFTGKLADQASKANLMFEEGKSMTPVYTAALKDELVKTDKIYGKIKKRLLWGSDL
                     ATMIRCARAFGGLMDELKAHCVTLPIRVGMNMNEDGPIIFERHSRYTYHYDADYSRWD
                     STQQRAVLAAALEIMVKFSPEPHLAQVVAEDLLSPSVVDVGDFTISINEGLPSGVPCT
                     SQWNSIAHWLLTLCALSEVTNLSPDTIQANSLFSFYGDDEIVSTDIKLDPEKLTAKLR
                     EYGLKPTRPDKTEGPLVISEDLNGLTFLRRTVTRDPAGWFGKLEQSSILRQMYWTRGS
                     NHEDPSETMIPHSQRPIQLMSLLGEAALHGPAFYSKISKLVIAELKEGGMDFYVPRQE
                     PMFRWMRFSDLSTWEGDRNLAPSFVNEDGVE"
     CDS             5081..6703
                     /codon_start=1
                     /product="VP1"
                     /protein_id="BAJ13732.1"
                     /translation="MKMASSDANPSDGSTANLVPEVNNEVMALEPVVGAAIAAPVAGQ
                     QNVIDPWIRNNFVQAPGGEFTVSPRNAPGEILWSAPLGPDLNPYLSHLARMYNSYAGG
                     FEVQVILAGNAFTAGKIIFAAVPPNFPTEGLSPSQVTMFPHIIVDVRQLEPVLIPLPD
                     VRNNFYHYNQSNDPTIKLIAMLYTPLRANNAGDDVFTVSCRVLTRPSPDFDFIFLVPP
                     TVESRTKPFSVPILTVEEMTNSRFPIPLEKLFTGPSSAFVVQPQNGRCTTDGVLLGTT
                     QLSPVNICTFRGDVTHIAGTQEYTMNLASQNWNNYDPTEEIPAPLGTPDFVGKIQGVL
                     TQTTRRDGSTRGHKATVSTGSVHFTPKLGRIQFSTDTSNDFETGQNTRFTPVGVVQDG
                     STTHQNEPQQWVLPNYSGRDSHNVHLAPAVAPSFPGEQLLFFRSTMPGCSGYPNMNLD
                     CLLPQEWVQHFYQEAAPAQSDVALLRFVNPDTGRVLFECKLHKSGYVTVAHTGQHDLV
                     IPPNGYFRFDSWVNQFYTLAPMGNGTGRRRAL"
     CDS             6703..7509
                     /codon_start=1
                     /product="VP2"
                     /protein_id="BAJ13733.1"
                     /translation="MAGAFFAGLASDVLGSGLGSLINAGAGAINQKVEFENNRKLQQA
                     SFQFSSNLQQASFQHDKEMLQAQIEATKKLQQEMMKVKQAMLLEGGFSETDAARGAIN
                     APMTKALDWSGTRYWAPDARTTTYNAGRFSTPQPSGALPGRTNFRAAVPAWGSSSTPS
                     NSSAATSVYSNQTASTRLGSTAGSGTSVSSLPSTAGTRSWVEGQNRNLSPFMRGAHNI
                     SFVTPPSSRSSSQGTVSTVPKEVLDSWTGAFNTRRQPLFAHIRKRGESRA"
ORIGIN      
        1 atgaagatgg cgtctaacga cgcttccgct gccgctgttg ctaacagcaa caacgacacc
       61 gcaaaatctt caagtgacgg agtgctttct agcatggctg tcacttttaa acgagccctc
      121 ggggcgcggc ctaaacagcc tcccccgagg gaaatacaac aaagaccccc ccgaccacct
      181 actccagaat tggttaaaaa tattccccct cccccgccca acggagagga tgaaatagtg
      241 gtttcttata gtgtcaaaga tggtgtttcc ggtttgcctg acctttccac cgtcaggcaa
      301 ccggaagaat ctaacacggc cttcagtgtc cctccactca atcagaggga gaatagagat
      361 gctaaggaac cactgactgg aacaattctg gaaatgtggg atggagaaat ctaccattat
      421 ggcctgtatg tggagcgagg tcttgtacta ggtgtgcaca aaccaccagc tgccattagc
      481 ctcgctaggg tcgagctagc accactctcc ttgtactgga gacctgtgta cactccccag
      541 tacctcatct ctccagacac tctcaagaaa ttacacggag aaacgttccc ctacacagcc
      601 tttgataaca attgttacgc cttttgttgc tgggtcctgg acctaaatga ctcgtggctg
      661 agcaggagaa tgatccagag aacaactggt ttcttcaggc cctaccaaga ttggaatagg
      721 aaaccccttc ccactatgga tgactccaaa ctaaagaagg tagctaacat attcctgtgt
      781 gctctgtctt cgctattcac caggcccata aaagatataa tagggaagct aaggcctctt
      841 aacatcctca acatcttagc ctcatgtgat tggacttttg caggcatagt ggagtccctg
      901 atactcttgg cagaactctt tggagttttc tggacacccc cagatgtgtc tgcgatgatt
      961 gcccccttac tcggtgacta cgagctacaa gggcctgagg accttgcagt ggagctcgtc
     1021 cccgtagtga tgggggggat tggtttggtg ctaggattca ccaaagagaa gattgggaaa
     1081 atgttgtcat ctgctgcatc caccttgaga gcttgtaaag accttggtgc atatgggcta
     1141 gagatcctaa agttggtcat gaagtggttc ttcccgaaga aggaggaagc aaatgaattg
     1201 gctatagtga gatctataga ggatgcagtc ctggatctcg aggcaattga aaacaaccat
     1261 atgaccacct tgctcaaaga caaagacagt ctggcaacct atatgagaac ccttgacctt
     1321 gaggaggaga aagccaggaa gctctcaacc aagtctgcct cacctgacat cgtgggcaca
     1381 atcaacgccc ttctggcgag aatcgctgct gcacgctctc tggtgcatcg agcgaaggag
     1441 gaactttcca gcagaccaag acctgtagta ttgatgatat caggcagacc aggaataggg
     1501 aagacccacc ttgctaggga aatggctaag agaatcgcag cctccctcac aggagaccag
     1561 cgtgtaggcc tcgtcccacg caatggcgtc gaccattggg atgcgtacaa gggggagagg
     1621 gtcgtcctat gggacgatta tgggatgagc aatcccattc acgatgccct caggttgcaa
     1681 gaactcgctg acacttgccc cctcactcta aactgtgaca ggattgagaa taaaggaaag
     1741 gtctttgaca gcgatgtcat cattatcacc actaatctgg ccaacccagc gccactggac
     1801 tatgtcaact ttgaagcatg ctcgaggcgc atcgacttcc tcgtgtatgc agaagcccct
     1861 gaagtcgaga aggcgaagcg tgacttccca ggccaacctg acatgtggaa gaacgccttc
     1921 agctctgatt tctcacacat aaaactaaca ttggccccac agggtggctt cgacaagaac
     1981 gggaacaccc cacacggaag gggcgtcatg aagactctca ccactggctc ccttattgcc
     2041 cgggcatcag ggctactcca tgagaggtta gatgaatttg aactacaggg cccaactctc
     2101 actaccttca atttcgatcg caataaagtg cttgccttta gacaacttgc tgctgaaaac
     2161 aaatatgggt tgatggacac aatgagagtt gggagacagc tcaaggatgt cagaaccatg
     2221 ccagaactca aacaagcact caagaacacc tcaatcaaga ggtgccagat agtgtatagt
     2281 ggttgcacct acatacttga gtctgatggc aagggcaatg tgaaagttga cagagttcag
     2341 agcgcctccg tgcagaccaa caatgagcta actggtgccc tgcaccattt gaggtgcgcc
     2401 aggatcagat actatgtcaa gtgtgtccag gaggccctgt attccatcat ccaaattgct
     2461 ggagctgcat ttgtcaccac gcgcatcgtc aagcgcatga acatacaaga cctatggtcc
     2521 aagccacaag tggaaaacac agaggagacc accagtaagg acgggtgccc aaaacccaaa
     2581 gatgatgggg agtttgtcat ttcatccgac gacatcaaaa ctgagggtaa gaaagggaag
     2641 aacaagactg gccgcggcaa gaagcacaca gccttttcaa gcaaaggcct cagtgatgaa
     2701 gagtacgatg agtacaagag aattagagaa gaaaggaatg gcaagtactc catagaagag
     2761 taccttcagg acagggacaa atactatgag gaggtggcca ttgccagggc gactgaggaa
     2821 gacttctgtg aagaggagga ggccaagatc cgacaaagga tcttcaggcc aacaaggaaa
     2881 caacgcaagg aggaaagagc ttctctcggt ctggtcacag gttctgaaat taggaaaaga
     2941 aacccagatg atttcaaacc caaggggaaa ctgtgggctg acgatgacag aagtgtggac
     3001 tataatgaga aactcagctt tgaggcccca ccaagcatct ggtcgaggat agtcaacttt
     3061 ggctcaggtt ggggattctg ggtctccccc agtctgttca taacatcaac ccatgtcata
     3121 ccccagggcg caaaggagtt ctttggagtc cccatcaaac aaattcaggt ccacaagtca
     3181 ggcgagtttt gtcgcttgag atttccaaaa ccaatcagga ctgatgtgac aggcatgatc
     3241 ttagaagaag gcgcacccga gggcaccgtg gtcacactac tcatcaaaag atccactggg
     3301 gaactcatgc ccctagcagc taggatgggg acccatgcaa ccatgaagat ccaagggcgc
     3361 accgttggag gccaaatggg catgcttctg acaggatcca acgccaaaag catggatctg
     3421 ggtactacac caggtgattg tggctgtccc tacatctaca agagaggaaa tgactatgtg
     3481 gtcattggag tccacacggc tgccgctcgt gggggaaaca ctgtcatatg tgccacccag
     3541 gggagtgagg gagaggctac acttgaaggt ggtgacaaca aggggacata ctgtggagca
     3601 ccaatcctag gcccagggag tgccccaaaa cttagcacca agaccaaatt ctggagatcg
     3661 tccacggcat cactcccacc tggcacctat gaaccagcct atcttggtgg caaggaccct
     3721 agagtcaagg gtggcccttc actgcagcaa gtcatgaggg aacagttgaa gccattcaca
     3781 gagcccagag gcaagccacc aaagccaagt gtgttagaag ctgccaagaa gaccatcatt
     3841 aatgtccttg agcaaacaat tgatccacct gagaagtggt cattcgcaca agcttgcgcg
     3901 tcccttgaca agaccacctc cagtggccat ccgcaccata tgcggaaaaa cgactgctgg
     3961 aacggggagt ccttcacagg caagctagca gaccaggcct ccaaggccaa tctgatgttt
     4021 gaagaaggga agagcatgac cccagtctac acagctgcgc tcaaggatga attagttaaa
     4081 actgacaaaa tttatggcaa gatcaagaag aggcttctct ggggctcgga cttggcgacc
     4141 atgatccggt gtgctcgagc attcggaggc ctaatggatg aactcaaagc acactgtgtc
     4201 acacttccca ttagagttgg tatgaacatg aatgaggatg gccccattat cttcgagagg
     4261 cattccaggt acacatatca ctatgatgct gattactctc gatgggattc aacacaacaa
     4321 agagccgtgt tggcggcagc tctagaaatc atggttaagt tctccccaga accacatttg
     4381 gctcaggtag tcgcggaaga cctcctttct cctagcgtgg tggacgtggg cgacttcaca
     4441 atatcaatca acgagggtct tccctctggg gtgccctgca cctcccaatg gaactccatc
     4501 gcccactggc ttctcactct ctgtgcgctc tctgaagtta caaacttgtc ccctgatacc
     4561 atacaggcta attccctctt ctctttttat ggtgatgatg aaattgttag cacagatata
     4621 aagttggacc cagagaaatt gacagcaaag ctcagggaat atgggttaaa accaacccgc
     4681 cctgacaaga ctgagggacc ccttgtcatc tctgaagact tgaatggctt gactttcctg
     4741 cggagaactg tgacccgcga cccagctggt tggtttggga aactggagca gagttcaata
     4801 ctcaggcaaa tgtactggac taggggctcc aaccatgaag acccatctga aacaatgatt
     4861 ccacactccc aaagacccat acaattgatg tccctactgg gggaggccgc tcttcacggc
     4921 ccagcattct acagcaaaat cagcaagtta gtcattgcag agctaaaaga aggtggcatg
     4981 gatttttacg tgcccagaca agagccaatg ttcagatgga tgagattctc agatctgagc
     5041 acgtgggagg gcgatcgcaa tctggctccc agttttgtga atgaagatgg cgtcgagtga
     5101 cgccaaccca tctgatgggt ccacagccaa cctcgtccca gaggtcaaca atgaggttat
     5161 ggctttggag cccgttgttg gtgccgctat tgcggcacct gtagcgggcc aacaaaatgt
     5221 aattgacccc tggattagaa ataattttgt acaagcccct ggtggagagt ttacagtatc
     5281 ccctagaaac gctccaggtg aaatactatg gagcgcgccc ttgggccctg atttgaatcc
     5341 ctacctttcc catttggcca gaatgtacaa tagttatgca ggtggttttg aagtgcaggt
     5401 aatcctcgcg gggaacgcgt tcaccgccgg aaaaatcata tttgcagcag tcccaccaaa
     5461 ttttccaact gaaggtttga gccccagcca ggtcactatg ttcccccata taatagtaga
     5521 tgttaggcaa ctggaacctg tgttgatccc cttacccgat gttaggaata atttctatca
     5581 ttacaatcaa tcaaatgacc ccaccatcaa attgatagca atgttgtata caccacttag
     5641 ggctaataat gctggggacg atgtcttcac agtttcttgt cgggttctca cgagaccatc
     5701 ccccgacttt gatttcatat ttttagtgcc acccacagtt gagtcaagaa ctaaaccatt
     5761 ctctgtccca attttaactg ttgaggagat gaccaactca agattcccca ttcctttgga
     5821 aaagttgttc acgggtccca gcagtgcctt tgtcgtccaa ccacaaaatg gcaggtgcac
     5881 gactgacggc gtgctcctag gtactaccca actgtctcct gtcaacatct gcaccttcag
     5941 aggggatgtc acccacattg cgggtactca agaatacaca atgaatctgg cctcccaaaa
     6001 ctggaacaat tatgacccaa cagaagagat cccagcccct ctgggaactc cagatttcgt
     6061 gggtaagatc caaggcgtgc tcacccaaac cacaaggagg gatggctcga cccgcggtca
     6121 caaagccaca gtgagcactg gaagtgtcca cttcacccca aagctgggca gaattcaatt
     6181 ctccactgat acaagcaatg actttgaaac tggccaaaac acgagattca ccccagtcgg
     6241 tgttgtccag gatggtagta ccacccacca aaatgaaccc caacaatggg tacttccaaa
     6301 ttattcaggt agagatagtc acaatgtgca cttagccccc gccgtggccc cctcttttcc
     6361 gggtgagcaa cttcttttct tcaggtccac tatgcccgga tgcagcgggt atcccaacat
     6421 gaatctggat tgcctactcc cccaggagtg ggtgcagcac ttctaccaag aggcagcccc
     6481 agcacaatct gacgtggctc tactaagatt tgtgaatcca gacacaggta gggttctgtt
     6541 tgagtgtaag cttcataaat caggctatgt cacagtggct cacactggcc aacatgattt
     6601 agttatcccc cccaatggct attttagatt tgattcctgg gtcaaccagt tctacacact
     6661 tgcccccatg ggaaatggaa cggggcgtag acgtgcatta taatggctgg agctttcttt
     6721 gctggattgg catctgatgt ccttggctct ggacttggtt ccctaatcaa tgctggggct
     6781 ggggccatca accaaaaagt tgaatttgaa aataacagaa aattgcaaca agcttccttc
     6841 caatttagca gcaacctaca acaggcttcc tttcaacatg ataaagagat gctccaagca
     6901 caaattgagg ccaccaaaaa gttgcaacag gaaatgatga aagttaaaca ggcaatgctc
     6961 ctagagggtg ggttctctga gacagatgca gcccgtgggg caatcaacgc ccccatgaca
     7021 aaggctttgg actggagtgg gacaaggtac tgggctcccg atgctaggac tacaacatac
     7081 aatgcaggcc gcttttccac cccacaaccc tcgggggcac tgccaggaag aactaatttt
     7141 agggctgctg tccccgcctg gggctcctct agtacacctt ctaactcttc tgctgctact
     7201 tctgtgtact caaatcaaac tgcttcaacg agacttggtt ctacagctgg ttctggtacc
     7261 agtgtctcga gcctcccgtc aactgcagga actaggagct gggtcgaggg tcaaaatagg
     7321 aatttgtcac ctttcatgag gggggcccac aacatatcgt ttgtcacccc accatctagc
     7381 agatcctcta gccaaggcac agtctcaacc gtgcctaaag aagttttgga ctcctggact
     7441 ggcgctttca acacgcgcag gcagcctctc ttcgctcaca ttcgtaagcg aggggagtca
     7501 cgggcgtga
//