Typing tool

Complete norovirus genomes

AB447458  GII.4 Yerseke
 GII.P4 Yerseke

Length: 7,511 | 3 CDS

ORF1: 3..5102
ORF2: 5083..6705
ORF3: 6705..7511
LOCUS       AB447458                7511 bp    RNA     linear   VRL 05-NOV-2008
DEFINITION  Norovirus Hu/GII-4/Saga5/2006/JP genomic RNA, complete genome.
ACCESSION   AB447458
VERSION     AB447458.1
KEYWORDS    .
SOURCE      Norovirus Hu/GII-4/Saga5/2006/JP
  ORGANISM  Norovirus Hu/GII-4/Saga5/2006/JP
            Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
            Picornavirales; Caliciviridae; Norovirus.
REFERENCE   1
  AUTHORS   Motomura,K., Oka,T., Yokoyama,M., Nakamura,H., Mori,H., Ode,H.,
            Hansman,G.S., Katayama,K., Kanda,T., Tanaka,T., Takeda,N. and
            Sato,H.
  CONSRTM   and the Norovirus Surveillance Group of Japan
  TITLE     Identification of monomorphic and divergent haplotypes in the
            2006-2007 norovirus GII/4 epidemic population by genomewide tracing
            of evolutionary history
  JOURNAL   J. Virol. 82 (22), 11247-11262 (2008)
   PUBMED   18768979
REFERENCE   2  (bases 1 to 7511)
  AUTHORS   Motomura,K. and Sato,H.
  TITLE     Direct Submission
  JOURNAL   Submitted (14-JUL-2008) Contact:Kazushi Motomura National Institute
            of Infectious Diseases, Center for Pathogen Genomics; Gakuen 4-7-1,
            Musashi-Murayama, Tokyo 208-0011, Japan
COMMENT     These sequences were determined at our laboratory.
FEATURES             Location/Qualifiers
     source          1..7511
                     /organism="Norovirus Hu/GII-4/Saga5/2006/JP"
                     /mol_type="genomic RNA"
                     /strain="Hu/GII-4/Saga5/2006/JP"
                     /isolation_source="stool"
                     /db_xref="taxon:546982"
                     /country="Japan:Saga"
     CDS             3..5102
                     /note="contains N-terminal, NTPase, 3A, VPg, 3Cpro and
                     3Dpol"
                     /codon_start=1
                     /product="polyprotein"
                     /protein_id="BAG70520.1"
                     /translation="MKMASNDASAAAVANSNNDTAKSSSDGVLSSMAVTFKRALGARP
                     KQPPPREIPQRPPRPPTPELVKNIPPPPPNGEDEIVVSYSVKDGVSGLPDLSTVRQPE
                     ESNTAFSVPPLNQRENRDAKEPLTGTILEMWDGEIYHYGLYVERGLVLGVHKPPAAIS
                     LARVELAPLSLYWRPVYTPQYLISPDTLKKLHGETFPYTAFDNNCYAFCCWVLDLNDS
                     WLSRRMIQRTTGFFRPYQDWNRKPLPTMDDSKLKKVANLFLCALSSLFTRPIKDIIGK
                     LRPLNILNILASCDWTFAGIVESLILLAELFGVFWTPPDVSAMIAPLLGDYELQGPED
                     LAVELVPVVMGGIGLVLGFTKEKIGKMLSSAASTLRACKDLGAYGLEILKLVMKWFFP
                     KKEEANELAIVRSIEDAVLDLEAIENNHMTTLLKDKDSLATYMRTLDLEEEKARKLST
                     KSASPDIVGTINALLARIAAARSLVHRAKEELSSRPRPVVLMISGRPGIGKTHLAREM
                     AKRIAASLTGDQRVGLVPRNGVDHWDAYKGERVVLWDDYGMSNPIHDALRLQELADTC
                     PLTLNCDRIENKGKVFDSDVIIITTNLANPAPLDYVNFEACSRRIDFLVYAEAPEVEK
                     AKRDFPGQPDMWKNAFSSDFSHIKLTLAPQGGFDKNGNTPHGRGVMKTLTTGSLIARA
                     SGLLHERLDEFELQGPTLTTFNFDRNKVLAFRQLAAENKYGLMDTMRVGRQLKDVRTM
                     PELKQALKNISIKKCQIVYSGCTYILESDGKGNVKVDRVQSASVQTNNELTGALHHLR
                     CARIRYYVKCVQEALYSIIQIAGAAFVTTRIVKRMNIQDLWSKPQVENTEETTSKDGC
                     PKPKDDEEFVISSDDIKTEGKKGKNKTGRGKKHTAFSSKGLSDEEYDEYKRIREERNG
                     KYSIEEYLQDRDKYYEEVAIARATEEDFCEEEEAKIRQRIFRPTRKQRKEERASLGLV
                     TGSEIRKRNPDDFKPKGKLWADDDRSVDYNEKLSFEAPPSIWSRIVNFGSGWGFWVSP
                     SLFITSTHVIPQGAKEFFGVPIKQIQVHKSGEFCRLRFPKPIRTDVTGMILEEGAPEG
                     TVVTLLIKRSTGELMPLAARMGTHATMKIQGRTVGGQMGMLLTGSNAKSMDLGTTPGD
                     CGCPYIYKRGNDYVVIGVHTAAARGGNTVICATQGSEGEATLEGGDNKGTYCGAPILG
                     PGSAPKLSTKTKFWRSSTASLPPGTYEPAYLGGKDPRVKGGPSLQQVMREQLKPFTEP
                     RGKPPKPSVLDAAKKTIINVLEQTIDPPEKWSFAQACASLDKTTSSGHPHHMRKNDCW
                     NGESFTGKLADQASKANLMFEEGKNMTPVYTAALKDELVKTDKIYGKIKKRLLWGSDL
                     ATMIRCARAFGGLMDELKAHCVTLPIRVGMNMNEDGPIIFERHSRYTYHYDADYSRWD
                     STQQRAVLAAALEIMVKFSPEPHLAQVVAEDLLSPSVVDVGDFTISINEGLPSGVPCT
                     SQWNSIAHWLLTLCALSEVTNLSPDTIQANSLFSFYGDDEIVSTDIKLDPEKLTAKLR
                     EYGLKPTRPDKTEGPLVISEDLNGLTFLRRTVTRDPAGWFGKLEQSSILRQMYWTRGS
                     NHEDPSETMIPHSQRPIQLMSLLGEAALHGPAFYSKISKLVIAELKEGGMDFYVPRQE
                     PMFRWMRFSDLSTWEGDRNLAPSFVNEDGVE"
     CDS             5083..6705
                     /codon_start=1
                     /product="VP1"
                     /protein_id="BAG70521.1"
                     /translation="MKMASSDANPSDGSTANLVPEVNNEVMALEPVVGAAIAAPVAGQ
                     QNVIDPWIRNNFVQAPGGEFTVSPRNAPGEILWSAPLGPDLNPYLSHLARMYNSYAGG
                     FEVQVILAGNAFTAGKIIFAAVPPNFPTEGLSPSQVTMFPHIIVDVRQLEPVLIPLPD
                     VRNNFYHYNQSNDPTIKLIAMLYTPLRANNAGDDVFTVSCRVLTRPSPDFDFIFLVPP
                     TVESRTKPFSVPVLTVEEMTNSRFPIPLEKLFTGPSSAFVVQPQNGRCTTDGVLLGTT
                     QLSPVNICTFRGDVTHIAGTQEYTMNLASQNWNNYDPTEEIPAPLGTPDFVGKIQGVL
                     TQTTRRDGSTRGHKATVSTGSVHFTPKLGRIQFSTDTSNDFETGQNTRFTPVGVVQDG
                     GTTHQNEPQQWVLPNYSGRDSHNVHLAPAVAPSFPGEQLLFFRSTMPGCSGYPNMNLD
                     CLLPQEWVQHFYQEAAPAQSDVALLRFVNPDTGRVLFECKLHKSGYVTVAHTGQHDLV
                     IPPNGYFRFDSWVNQFYTLAPMGNGTGRRRAL"
     CDS             6705..7511
                     /codon_start=1
                     /product="VP2"
                     /protein_id="BAG70522.1"
                     /translation="MAGAFFAGLASDVLGSGLGSLINAGAGAINQKVEFENNRKLQQA
                     SFQFSSNLQQASFQHDKEMLQAQIEATKKLQQEMMKVKQAMLLEGGFSETDAARGAIN
                     APMTKALDWSGTRYWAPDARTTTYNAGRFSTPQPSGALPGRTNLRAAVPAWGSSSTPS
                     NSSTATSVHSNQTASTRLGSTAGSGTSVSSLPSTARTRSWVEDQNRNLSPFMRGAHNI
                     SFVTPPSSRSSSQGTVSTVPKEVLDSWTGAFNTRRQPLFAHIRKRGESRV"
ORIGIN      
        1 gaatgaagat ggcgtctaac gacgcttccg ctgccgctgt tgctaacagc aacaacgaca
       61 ccgcaaaatc ttcaagtgac ggagtgcttt ctagcatggc tgtcactttt aaacgagccc
      121 tcggggcgcg gcctaaacaa cctcccccga gggaaatacc acaaagaccc ccacgaccac
      181 ctactccaga actggttaaa aatatccccc ctcccccgcc caacggagag gatgaaatag
      241 tggtttctta tagtgtcaaa gatggtgttt ccggtttgcc tgacctttcc accgtcaggc
      301 aaccggaaga atctaacacg gcctttagtg tccctccact caatcagagg gagaatagag
      361 atgctaagga gccactgact gggacaattc tggaaatgtg ggatggagaa atctaccatt
      421 atggcctgta tgtggagcga ggtcttgtac taggtgtgca caaaccacca gctgccatta
      481 gcctcgctag ggtcgagcta gcaccactct ccttgtactg gagacctgtg tacactcccc
      541 agtacctcat ctctccagac actctcaaga aattacacgg agaaacgttc ccctacacag
      601 cctttgacaa caattgttat gccttttgtt gctgggtcct ggacctaaat gactcatggc
      661 tgagcaggag aatgatccag agaacaactg gtttcttcag gccctaccaa gattggaata
      721 ggaaacccct ccccactatg gatgactcca aattaaagaa ggtagctaac ttatttctgt
      781 gtgctctgtc ttcgctattc accaggccca taaaagatat aataggaaag ctaaggcctc
      841 ttaacatcct caacatctta gcctcatgtg attggacttt tgcaggcata gtggagtccc
      901 tgatactctt ggcagaactc tttggagttt tctggacacc cccagatgtg tctgcgatga
      961 ttgccccctt actcggtgac tacgagctac aaggacctga ggaccttgca gtggagctcg
     1021 tccccgtagt gatgggggga attggtttgg tgctaggatt caccaaagag aagattggga
     1081 aaatgttgtc atctgctgca tccaccttga gagcttgtaa agaccttggt gcatatgggc
     1141 tagagatcct aaagttggtc atgaagtggt tcttcccgaa gaaggaggaa gcaaatgaat
     1201 tggctatagt gagatctatc gaggatgcag tcctggatct cgaggcaatt gaaaacaacc
     1261 atatgaccac cttgctcaaa gacaaagaca gtctggcaac ctatatgaga acccttgacc
     1321 ttgaggagga gaaagccagg aaactctcaa ccaagtctgc ctcacctgac atcgtgggca
     1381 caatcaacgc ccttctggcg agaatcgctg ctgcacgctc tctggtgcat cgagcgaagg
     1441 aggaactttc cagcagacca agacctgtag tattgatgat atcaggcaga ccaggaatag
     1501 ggaagaccca cctcgctagg gaaatggcta aaagaatcgc agcctccctc acaggagacc
     1561 agcgtgtagg cctcgtccca cgcaatggcg tcgaccactg ggatgcgtac aagggggaga
     1621 gggtcgtcct atgggacgat tatgggatga gcaatcccat tcacgatgcc ctcaggttgc
     1681 aagaactcgc cgacacttgc cccctcactc taaactgtga caggattgag aataaaggaa
     1741 aggtctttga cagcgatgtc atcattatca ccactaatct ggccaaccca gcaccactgg
     1801 actatgtcaa ctttgaggca tgctcgaggc gcatcgactt cctcgtgtat gcagaagccc
     1861 ctgaagtcga aaaggcgaag cgtgacttcc caggccaacc tgacatgtgg aagaacgcct
     1921 tcagttctga tttctcacac ataaaactaa cattggcccc acagggtggc tttgacaaga
     1981 acgggaacac cccacacgga aggggcgtca tgaagactct caccactggc tcccttattg
     2041 cccgggcatc agggctactc catgagaggt tagatgaatt tgaactacag ggcccaactc
     2101 tcactacctt caatttcgat cgcaataaag tgcttgcctt tagacaactt gctgctgaaa
     2161 acaaatatgg gttgatggac acaatgaggg ttgggagaca gctcaaggat gtcagaacca
     2221 tgccagaact caaacaagca ctcaagaata tctcaatcaa gaagtgccag atagtgtata
     2281 gtggttgcac ctacatactt gagtctgacg gcaagggcaa tgtgaaagtt gacagagttc
     2341 agagcgcctc cgtgcagacc aacaatgagc tgactggtgc cctgcaccat ttgaggtgcg
     2401 ccaggatcag atactatgtc aagtgtgtcc aggaggccct gtattccatc atccaaattg
     2461 ctggggctgc gtttgtcacc acacgcatcg tcaagcgcat gaacatacaa gacctatggt
     2521 ccaagccaca agtggaaaac acagaggaga ccaccagcaa ggacgggtgt ccaaaaccca
     2581 aagatgatga ggagtttgtc atttcatccg acgacatcaa aactgagggt aagaaaggga
     2641 agaacaagac tggccgcggc aagaagcaca cagccttttc aagcaaaggt ctcagtgatg
     2701 aagagtacga tgagtacaag aggattagag aagaaaggaa tggcaagtac tccatagaag
     2761 aataccttca ggacagggac aaatactatg aggaggtggc cattgccagg gcgactgagg
     2821 aagacttctg tgaagaggag gaggccaaga tccggcaaag gatcttcagg ccaacaagga
     2881 aacaacgcaa ggaggaaaga gcttctctcg gtctggtcac aggttctgaa attaggaaaa
     2941 gaaacccaga tgatttcaaa cccaagggga aactgtgggc tgacgatgac agaagtgtgg
     3001 actataatga gaaactcagc tttgaggccc caccaagcat ctggtcgagg atagtcaact
     3061 ttggctcagg ctggggattc tgggtctccc ccagtctgtt cataacatcg acccatgtca
     3121 taccccaggg cgcaaaggag ttctttggag tccccatcaa acaaattcag gtacacaagt
     3181 caggcgagtt ctgtcgcttg agattcccaa aaccaatcag gactgatgtg acaggcatga
     3241 tcttagaaga aggcgcaccc gagggcaccg tggtcacact actcatcaaa aggtccactg
     3301 gggaactcat gcccctagca gctaggatgg ggacccatgc aaccatgaag atccaagggc
     3361 gcaccgttgg aggccaaatg ggcatgcttc tgacaggatc caacgccaaa agcatggatc
     3421 tgggtactac accaggtgat tgtggctgtc cctacatcta caagagagga aatgactatg
     3481 tggtcattgg agtccacacg gctgccgctc gtgggggaaa cactgtcata tgtgccaccc
     3541 aggggagtga gggagaggct acacttgaag gtggtgacaa caagggtaca tactgtggtg
     3601 caccaatcct aggcccaggg agtgccccaa aacttagcac caagaccaaa ttctggagat
     3661 cgtccacggc atcactccca cctggcacct atgaaccagc ctatcttggt ggcaaggacc
     3721 ctagagtcaa gggtggccct tcactgcagc aagtcatgag ggaacagttg aagccattca
     3781 cagagcccag gggcaagcca ccgaagccaa gtgtgttaga cgctgccaag aagaccatca
     3841 tcaatgtcct tgagcaaaca attgatccac ctgagaaatg gtcattcgca caagcttgcg
     3901 cgtcccttga caagaccact tccagtggcc atccgcacca catgcggaaa aacgactgct
     3961 ggaacgggga gtccttcaca ggcaagctag cagaccaggc ttccaaggcc aatctgatgt
     4021 ttgaagaagg gaagaacatg accccagtct acacagctgc gctcaaggat gaattagtta
     4081 aaactgacaa aatttatggt aagatcaaga agaggcttct ctggggctcg gacttggcga
     4141 ccatgattcg gtgtgctcga gcattcggag gcctaatgga tgaactcaaa gcacactgtg
     4201 tcacacttcc cattagagtt ggtatgaata tgaatgagga tggccccatc atcttcgaga
     4261 ggcattccag gtacacatac cactatgatg ctgattactc tcgatgggat tcgacacaac
     4321 agagagccgt gttggcagca gctctagaaa tcatggttaa attctcccca gaaccacatt
     4381 tggctcaggt agtcgcggaa gaccttcttt ctcctagcgt ggtggacgtg ggcgacttca
     4441 caatatcaat caacgagggt cttccctctg gggtgccctg cacctcccaa tggaactcca
     4501 tcgcccactg gcttctcact ctctgtgcgc tctctgaagt tacaaacttg tcccctgata
     4561 ccatacaggc taattccctc ttctcttttt atggtgatga tgaaattgtt agcacagata
     4621 taaaattgga cccagagaaa ttgacagcaa agctcaggga atatgggtta aaaccaaccc
     4681 gccctgacaa aactgaagga ccccttgtca tctctgaaga cttgaatggc ctgactttcc
     4741 tgcggagaac tgtgacccgc gacccagctg gttggtttgg aaaactggag cagagttcaa
     4801 tactcaggca aatgtactgg actaggggct ccaaccatga agacccatct gaaacaatga
     4861 ttccacactc ccaaagaccc atacaattga tgtccctact gggggaggcc gctcttcacg
     4921 gcccagcatt ctacagcaaa atcagcaagt tagtcattgc agagctaaaa gaaggtggca
     4981 tggattttta cgtgcccaga caagagccaa tgttcagatg gatgagattc tcagatctga
     5041 gcacgtggga gggcgatcgc aatctggctc ccagttttgt gaatgaagat ggcgtcgagt
     5101 gacgccaacc catctgatgg gtccacagcc aacctcgtcc cagaggtcaa caatgaggtt
     5161 atggctttgg agcccgttgt tggtgccgct attgcggcac ctgtagcggg ccaacaaaac
     5221 gtaattgacc cctggattag aaataatttt gtacaagccc ctggtggaga gtttacagta
     5281 tcccctagaa acgctccagg tgaaatacta tggagcgcgc ccttgggccc tgatttgaat
     5341 ccttaccttt cccatttggc cagaatgtac aatagttatg caggtggttt tgaagtgcag
     5401 gtaatcctcg cggggaacgc gttcaccgcc ggaaagatca tatttgcagc agtcccacca
     5461 aatttcccaa ctgaaggctt gagccccagc caggtcacta tgttccccca tataatagta
     5521 gatgttaggc aactggaacc tgtgttgatc cctttgcccg atgttaggaa taatttctat
     5581 cactacaatc aatcaaatga ccccaccatc aaattgatag caatgttgta cacaccactt
     5641 agggctaata atgctgggga cgatgtcttc acagtttctt gtcgggttct cacgagacca
     5701 tcccccgatt ttgatttcat atttttagtg ccacccacag ttgagtcaag aactaaacca
     5761 ttctctgtcc cagttttaac tgttgaggag atgaccaatt caagattccc cattcctttg
     5821 gaaaagttgt ttacgggtcc cagcagtgcc tttgttgttc aaccacagaa tggcaggtgc
     5881 acgactgatg gcgtgctctt aggcaccacc caactgtctc ctgtcaacat ctgcaccttc
     5941 agaggggatg tcacccacat tgctggtact caagaataca caatgaatct ggcctcccaa
     6001 aactggaaca attatgaccc aacagaagaa atcccagccc ctctgggaac tccagatttc
     6061 gtgggcaaga tccaaggcgt gctcacccaa accacaagga gggatggctc gacccgcggt
     6121 cacaaagcca cagtgagcac tggaagtgtc cacttcaccc caaagctggg cagaattcaa
     6181 ttctccactg atacaagcaa tgattttgaa actggccaaa acacgagatt caccccagtc
     6241 ggtgttgtcc aggatggtgg taccacccac caaaatgaac cccaacaatg ggtactccca
     6301 aattattcag gtagagatag tcacaatgtg cacctagccc ctgccgtggc cccctctttt
     6361 ccgggtgagc aacttctttt cttcaggtcc actatgcccg gatgcagcgg gtatcccaac
     6421 atgaatttgg attgtctact cccccaggag tgggtgcagc acttctacca agaggcagcc
     6481 ccagcacaat ctgatgtggc tctgctaaga tttgtgaatc cagacacagg tagggttctg
     6541 tttgagtgta agcttcataa atcaggctat gtcacagtgg ctcacactgg ccaacatgat
     6601 ttagttatcc cccccaatgg ctattttaga tttgattcct gggtcaacca gttctacaca
     6661 cttgccccca tgggaaatgg aacggggcgt agacgtgcat tataatggct ggagctttct
     6721 ttgctggatt ggcatctgat gtcctcggct ctggacttgg ttccctaatc aatgctgggg
     6781 ctggggccat caatcaaaaa gttgaatttg aaaataacag aaaattgcaa caagcttcct
     6841 tccaatttag cagcaaccta caacaggctt cctttcaaca tgataaagag atgctccaag
     6901 cacaaattga ggccaccaaa aagttgcaac aggaaatgat gaaagttaaa caggcaatgc
     6961 tcctagaggg tgggttctct gagacagatg cagcccgtgg ggcaatcaac gcccccatga
     7021 caaaggcttt ggactggagc gggacaaggt actgggctcc cgatgctagg actacaacat
     7081 acaatgcagg ccgcttttcc acccctcaac cctcgggggc actgccaggg aggaccaatc
     7141 ttagggctgc tgtccccgcc tggggctcct ctagtacacc ttctaactct tccactgcca
     7201 cttctgtgca ctcaaatcaa actgcttcaa cgagacttgg ttccacagct ggttctggta
     7261 ccagtgtctc gagcctcccg tcaactgcaa ggaccaggag ctgggttgag gatcaaaaca
     7321 ggaatttgtc acctttcatg aggggggccc acaatatatc gtttgtcacc ccaccatcta
     7381 gcagatcctc tagccaaggc acagtctcaa ccgtgcctaa agaagttttg gactcctgga
     7441 ctggcgcttt caacacgcgc aggcagcctc tcttcgctca cattcgtaag cgaggggagt
     7501 cacgggtgta a
//