Typing tool

Complete norovirus genomes

AB447432  GII.4 Yerseke
 GII.P4 Yerseke

Length: 7,502 | 3 CDS

ORF1: 3..5102
ORF2: 5083..6705
ORF3: 6705..7502
LOCUS       AB447432                7502 bp    RNA     linear   VRL 05-NOV-2008
DEFINITION  Norovirus Hu/GII-4/Aomori1/2006/JP genomic RNA, complete genome.
ACCESSION   AB447432
VERSION     AB447432.1
KEYWORDS    .
SOURCE      Norovirus Hu/GII-4/Aomori1/2006/JP
  ORGANISM  Norovirus Hu/GII-4/Aomori1/2006/JP
            Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
            Picornavirales; Caliciviridae; Norovirus.
REFERENCE   1
  AUTHORS   Motomura,K., Oka,T., Yokoyama,M., Nakamura,H., Mori,H., Ode,H.,
            Hansman,G.S., Katayama,K., Kanda,T., Tanaka,T., Takeda,N. and
            Sato,H.
  CONSRTM   and the Norovirus Surveillance Group of Japan
  TITLE     Identification of monomorphic and divergent haplotypes in the
            2006-2007 norovirus GII/4 epidemic population by genomewide tracing
            of evolutionary history
  JOURNAL   J. Virol. 82 (22), 11247-11262 (2008)
   PUBMED   18768979
REFERENCE   2  (bases 1 to 7502)
  AUTHORS   Motomura,K. and Sato,H.
  TITLE     Direct Submission
  JOURNAL   Submitted (14-JUL-2008) Contact:Kazushi Motomura National Institute
            of Infectious Diseases, Center for Pathogen Genomics; Gakuen 4-7-1,
            Musashi-Murayama, Tokyo 208-0011, Japan
COMMENT     These sequences were determined at our laboratory.
FEATURES             Location/Qualifiers
     source          1..7502
                     /organism="Norovirus Hu/GII-4/Aomori1/2006/JP"
                     /mol_type="genomic RNA"
                     /strain="Hu/GII-4/Aomori1/2006/JP"
                     /isolation_source="stool"
                     /db_xref="taxon:546956"
                     /country="Japan:Aomori"
     CDS             3..5102
                     /note="contains N-terminal, NTPase, 3A, VPg, 3Cpro and
                     3Dpol"
                     /codon_start=1
                     /product="polyprotein"
                     /protein_id="BAG70442.1"
                     /translation="MKMASNDASAAAVANSNNDTAKSSSDGVLSSMAVTFKRALGARP
                     KQLPPREIPQRPPRPPTPELVKNIPPPPPNGEDEIVVSYSVKDGVSGLPDLSTVRQPE
                     ESNTAFSVPPLNQRENRDAKEPLTGTILEMWDGEIYHYGLYVERGLVLGVHKPPAAIS
                     LARVELAPLSLYWRPVYTPQYLISPDTLKKLHGETFPYTAFDNNCYAFCCWVLDLNDS
                     WLSRRMIQRTTGFFRPYQDWNRKPLPTMDDSKLKKVANIFLCALSSLFTRPIKDIIGK
                     LRPLNILNILASCDWTFAGIVESLILLAELFGVFWTPPDVSAMIAPLLGDYELQGPED
                     LAVELVPVVMGGIGLVLGFTKEKIGKMLSSAASTLRACKDLGAYGLEILKLVMKWFFP
                     KKEEANELAIVRSIEDAVLDLEAIENNHMTTLLKDKDSLATYMRTLDLEEEKARKLST
                     KSASPDIVGTINALLARIAAARSLVHRAKEELSSRPRPVVLMISGRPGIGKTHLAREM
                     AKRIAASLTGDQRVGLVPRNGVDHWDAYKGERVVLWDDYGMSNPIHDALRLQELADTC
                     PLTLNCDRIENKGKVFDSDVIIITTNLANPAPLDYVNFEACSRRIDFLVYAEAPEVEK
                     AKRDFPGQPDMWKNAFSSDFSHIKLTLAPQGGFDKNGNTPHGRGVMKTLTTGSLIARA
                     SGLLHERLDEFELQGPTLTTFNFDRNKVLAFRQLAAENKYGLMDTMRVGRQLKDVRTM
                     PELKRALKNISIKKCQIVYSGCTYILESDGKGDVKVDRVQSASVQTNNELTGALHHLR
                     CARIRYYVKCVQEALYSIIQIAGAAFVTTRIVKRMNIQDLWSKPQVENTEETTSKDGC
                     PKPKDDEEFVISSDDIKTEGKKGKNKTGRGKKHTAFSSKGLSDEEYDEYKRIREERNG
                     KYSIEEYLQDRDKYYEELAIARATEEDFCEEEEAKIRQRIFRPTRKQRKEERASLGLV
                     TGSEIRKRNPDDFKPKGKLWADDDRSVDYNEKLSFEAPPSIWSRIVNFGSGWGFWVSP
                     SLFITSTHVIPQGAKEFFGVPIKQIQVHKSGEFCRLRFPKPIRTDVTGMILEEGAPEG
                     TVVTLLIKRSTGELMPLAARMGTHATMKIQGRTVGGQMGMLLTGSNAKSMDLGTTPGD
                     CGCPYIYKRGNDYVVIGVHTAAARGGNTVICATQGSEGEATLEGGDNKGTYCGAPILG
                     PGSAPKLSTKTKFWRSSTASLPPGTYEPAYLGGKDPRVKGGPSLQQVMREQLKPFTEP
                     RGKPPKPSVLEAAKKTIINVLEQTIDPPEKWTFAQACASLDKTTSSGHPHHMRKNDCW
                     NGESFTGKLADQASKANLMFEEGKNMTPVYTAALKDELVKTDKIYGKIKKRLLWGSDL
                     ATMIRCARAFGGLMDELKAHCVTLPIRVGMNMNEDGPIIFERHSRYTYHYDADYSRWD
                     STQQRAVLAAALEIMVKFSPEPHLAQVVAEDLLSPSVVDVGDFTISINEGLPSGVPCT
                     SQWNSIAHWLLTLCALSEVTNLSPDTIQANSLFSFYGDDEIVSTDIKLDPEKLTTKLR
                     EYGLKPTRPDKTEGPLVISEDLNGLTFLRRTVTRDPAGWFGKLEQSSILRQMYWTRGS
                     NHEDPSETMIPHSQRPIQLMSLLGEAALHGPAFYSKISKLVIAELKEGGMDFYVPRQE
                     PMFRWMRFSDLSTWEGDRNLAPSFVNEDGVE"
     CDS             5083..6705
                     /codon_start=1
                     /product="VP1"
                     /protein_id="BAG70443.1"
                     /translation="MKMASSDANPSDGSTANLVPEVNNEVMALEPVVGAAIAAPVAGQ
                     QNVIDPWIRNNFVQAPGGEFTVSPRNAPGEILWSAPLGPDLNPYLSHLARMYNSYAGG
                     FEVQVILAGNAFTAGKIIFAAVPPNFPTEGLSPSQVTMFPHIIVDVRQLEPVLIPLPD
                     VRNNFYHYNQSNDPTIKLIAMLYTPLRANNAGDDVFTVSCRVLTRPSPDFDFIFLVPP
                     TVESRTKPFSVPILTVEEMTNSRFPIPLEKLFTGPSSAFVVQPQNGRCTTDGVLLGTT
                     QLSPVNICTFRGDVTHIAGTQEYTMNLASQNWNNYDPTEEIPAPLGTPDFVGKIQGVL
                     TQTTRRDGSTRGHKATVSTGSVHFTPKLGRIQFSTDTSNDFETGQNTRFTPVGVVQDG
                     STTHQNEPQQWVLPNYSGRDSHNVHLAPAVAPSFPGEQLLFFRSTMPGCSGYPNMNLD
                     CLLPQEWVQHFYQEAAPAQSDVALLRFVNPDTGRVLFECKLHKSGYVTVAHTGQHDLV
                     IPPNGYFRFDSWVNQFYTLAPMGNGTGRRRAL"
     CDS             6705..7502
                     /codon_start=1
                     /product="VP2"
                     /protein_id="BAG70444.1"
                     /translation="MAGAFFAGLASDVLGSGLGSLINAGAGAINQKVEFENNRKLQQA
                     SFQFSSNLQQASFQHDKEMLQAQIEATKKLQQEMMKVKQAMLLEGGFSETDAARGAIN
                     APMTKALDWSGTRYWAPDARTTTYNAGRFSTPQPSGALPGRTNLGAAVPARGSSSTPS
                     NSSSVYSNQTASTRLGSTAGSGTSVSSLPSTARTRSWVEDQNRNLSPFMRGAYNISFV
                     TPPSSRSSSQGTVSTVPKEVLDSWTGAFNTRRQPLFAHIRKRGESRV"
ORIGIN      
        1 gaatgaagat ggcgtctaac gacgcttccg ctgccgctgt tgctaacagc aacaacgaca
       61 ccgcaaaatc ttcaagtgac ggagtgcttt ctagcatggc tgtcactttt aaacgagccc
      121 tcggggcgcg gcctaaacag cttcccccga gggaaatacc acaaagaccc ccacgaccac
      181 ctactccaga actggttaaa aatattcccc ctcccccgcc caacggagag gatgaaatag
      241 tggtttctta tagtgtcaaa gatggtgttt ccggtttgcc tgacctttcc accgtcaggc
      301 aaccggaaga atctaacacg gcctttagtg tccctccact caatcagagg gagaatagag
      361 atgctaagga gccactgact gggacaattc tggaaatgtg ggatggagaa atctaccatt
      421 atggcctgta tgtggagcga ggtcttgtac taggtgtgca caaaccacca gctgccatta
      481 gccttgctag ggtcgagcta gcaccactct ccttgtactg gagacctgtg tacactcccc
      541 agtacctcat ctctccagac actctcaaga aattacacgg agaaacgttc ccctacacag
      601 cctttgacaa caattgttat gccttttgtt gctgggtcct ggacctaaat gactcgtggc
      661 tgagcaggag aatgatccag agaacaactg gtttcttcag gccctaccaa gattggaata
      721 ggaaacccct ccccactatg gatgactcca aattaaagaa ggtagctaac atattcctgt
      781 gtgctctgtc ttcgctattc accaggccca taaaagatat aatagggaag ctaaggcctc
      841 ttaacatcct caacatctta gcctcatgtg attggacttt tgcaggcata gtggagtccc
      901 tgatactctt ggcagaactc tttggagttt tttggacacc cccagatgtg tctgcgatga
      961 ttgccccctt actcggtgac tacgagctac aaggacctga ggaccttgca gtggagctcg
     1021 tccccgtagt gatgggggga attggtctgg tgctaggatt caccaaggag aagattggga
     1081 aaatgttgtc atctgctgca tccaccttga gagcttgtaa agaccttggt gcatatggac
     1141 tagagatcct aaagttggtc atgaagtggt tcttcccgaa gaaggaggaa gcaaatgaat
     1201 tggctatagt gagatctatc gaggatgcag tcctggatct cgaggcaatt gaaaacaacc
     1261 atatgaccac cttgctcaaa gacaaagaca gtctggcaac ctatatgaga acccttgacc
     1321 ttgaggagga gaaagccagg aaactctcaa ccaaatctgc ctcacctgac atcgtgggca
     1381 caatcaacgc ccttctggcg agaatcgctg ctgcacgctc tctggtgcac cgagcgaagg
     1441 aggaactttc cagcagacca agacctgtag tattgatgat atcaggcaga ccaggaatag
     1501 ggaagaccca cctcgctagg gaaatggcta agagaatcgc ggcctccctc acaggagacc
     1561 agcgtgtagg cctcgtccca cgcaatggcg tcgaccactg ggatgcgtac aagggggaga
     1621 gggtcgtcct atgggacgat tatgggatga gcaatcccat tcacgatgcc ctcaggttgc
     1681 aagaactcgc tgacacttgc cccctcactc taaactgtga caggattgag aataaaggaa
     1741 aggtctttga cagcgatgtc atcattatca ccactaatct ggccaaccca gcaccactgg
     1801 actatgtcaa ctttgaagca tgttcgaggc gcatcgactt cctcgtgtat gcagaagccc
     1861 ctgaagtcga aaaggcgaag cgtgacttcc caggccaacc tgacatgtgg aagaacgctt
     1921 tcagttctga tttctcacac ataaaactaa cattggcccc acagggtggc ttcgacaaga
     1981 acgggaacac cccacacgga aggggcgtca tgaagactct caccactggc tcccttattg
     2041 cccgggcatc agggctactc catgagaggt tagatgaatt tgaactacag ggcccaactc
     2101 tcactacctt caatttcgat cgcaataaag tgcttgcctt tagacaactt gctgctgaaa
     2161 acaaatatgg gttgatggac acaatgagag ttgggagaca gctcaaggat gtcagaacca
     2221 tgccagaact caaacgagca ctcaagaata tctcaatcaa gaagtgccag atagtgtata
     2281 gtggttgcac ctacatactt gagtctgatg gcaagggcga tgtgaaagtt gacagagttc
     2341 agagcgcctc cgtgcagacc aacaatgagc tgactggtgc cctgcaccat ttgaggtgcg
     2401 ccaggatcag atactatgtc aagtgtgtcc aggaggccct gtattccatc atccaaattg
     2461 ctggggctgc gtttgtcacc acgcgcatcg tcaagcgcat gaacatacaa gacctatggt
     2521 ccaagccaca agtggaaaac acagaggaga ccaccagcaa ggacgggtgc ccaaaaccca
     2581 aagatgatga ggagtttgtc atttcatcag acgacatcaa aactgagggt aagaaaggga
     2641 agaacaagac tggccgcggc aagaagcaca cagccttttc aagcaaaggt ctcagtgatg
     2701 aagagtacga tgagtacaag aggattagag aagaaaggaa tggcaagtac tccatagaag
     2761 aataccttca ggacagggac aaatactatg aggagttggc cattgccagg gcgactgagg
     2821 aagacttctg tgaagaggag gaggccaaga tccggcaaag gatcttcagg ccaacaagga
     2881 aacaacgcaa ggaggaaaga gcttctctcg gtctggtcac aggttctgaa attaggaaaa
     2941 gaaacccaga tgatttcaaa cccaagggga aactgtgggc tgacgatgat aggagtgtgg
     3001 actataatga gaaactcagc tttgaggccc caccaagcat ctggtcgagg atagtcaact
     3061 ttggctcagg ttggggattc tgggtctccc ccagtctgtt cataacatca acccatgtca
     3121 taccccaggg cgcaaaggag ttctttggag tccccatcaa acaaattcag gtacacaagt
     3181 caggcgagtt ctgtcgcttg agattcccaa aaccaatcag gactgatgtg acaggcatga
     3241 tcttagaaga aggcgcaccc gagggcaccg tggtcacact actcatcaaa aggtccactg
     3301 gggaactcat gcccctagca gctagaatgg ggacccatgc aaccatgaag atccaagggc
     3361 gcaccgttgg aggccaaatg ggcatgcttc tgacaggatc caacgccaaa agcatggatc
     3421 tgggtactac accaggtgat tgtggctgtc cctacatcta caagagagga aatgactatg
     3481 tggtcattgg agtccacacg gctgccgctc gtgggggaaa cactgtcata tgtgccaccc
     3541 aggggagtga gggagaggct acacttgaag gtggtgacaa caaggggacg tactgtggtg
     3601 caccaatcct aggcccaggg agtgccccaa aacttagcac caagaccaaa ttctggagat
     3661 cgtccacggc atcactccca cctggcacct atgaaccagc ctatcttggt ggcaaggacc
     3721 ctagagtcaa gggtggccct tcactgcagc aagtcatgag ggaacagttg aagccattca
     3781 cagagcccag gggcaagcca ccaaagccaa gtgtgttaga agctgccaag aagaccatca
     3841 tcaatgtcct tgagcaaaca attgatccac ctgagaaatg gacattcgca caagcttgcg
     3901 cgtcccttga caagaccact tccagtggcc atccgcacca tatgcggaaa aacgactgct
     3961 ggaacgggga gtccttcaca ggcaagctag cagaccaggc ttccaaggcc aatctgatgt
     4021 ttgaagaagg gaagaacatg accccagtct acacagctgc gctcaaggat gaattagtta
     4081 aaactgacaa aatttatggt aagatcaaga agaggcttct ctggggctcg gacttggcga
     4141 ccatgatccg gtgtgctcga gcattcggag gcctaatgga tgaactcaaa gcacactgtg
     4201 tcacacttcc cattagagtt ggtatgaata tgaatgagga tggccccatc atcttcgaga
     4261 ggcattccag gtacacatac cactatgatg ctgattactc tcgatgggat tcaacacaac
     4321 agagagccgt gttggcagca gctctagaaa tcatggttaa attctcccca gaaccacatt
     4381 tggctcaggt agtcgcggaa gaccttcttt ctcctagtgt ggtggacgtg ggcgatttca
     4441 caatatcaat caacgagggt cttccctctg gagtgccctg cacctcccaa tggaactcca
     4501 tcgcccattg gcttctcact ctctgtgcgc tctctgaagt tacaaacttg tcccctgata
     4561 ccatacaggc taattccctc ttctcttttt atggtgatga tgaaattgtt agcacagata
     4621 taaaattgga cccagagaaa ttgacaacaa agctcaggga atatgggtta aaaccaaccc
     4681 gccctgacaa aactgaagga ccccttgtca tctctgaaga cttgaatggc ctgactttcc
     4741 tgcggagaac tgtgacccgc gacccagctg gttggtttgg aaaactagag cagagttcaa
     4801 tactcaggca aatgtactgg actaggggct ccaaccatga agacccatct gaaacaatga
     4861 ttccacactc ccaaagaccc atacaattga tgtccctact gggggaggcc gctcttcacg
     4921 gcccagcatt ctacagcaaa atcagcaagt tagtcattgc agagctaaaa gaaggtggca
     4981 tggattttta cgtgcccaga caagagccaa tgttcagatg gatgagattc tcagatctga
     5041 gcacgtggga gggcgatcgc aatctggctc ccagttttgt gaatgaagat ggcgtcgagt
     5101 gacgccaacc catctgatgg gtccacagcc aacctcgtcc cagaggtcaa caatgaggtt
     5161 atggctttgg agcccgttgt tggtgccgct attgcggcac ctgtagcggg ccaacaaaat
     5221 gtaattgacc cctggattag aaataatttt gtacaagccc ctggtggaga gtttacagta
     5281 tcccctagaa acgctccagg tgaaatacta tggagcgcgc ccttgggccc tgatttgaat
     5341 ccctaccttt cccatttggc cagaatgtac aatagttatg caggtggttt tgaagtgcag
     5401 gtaatccttg cggggaacgc gttcaccgcc ggaaaaatca tatttgcagc agtcccacca
     5461 aatttcccaa ctgaaggctt gagccccagc caggtcacta tgttccccca tataatagta
     5521 gatgttaggc aactggaacc tgtgttgatt cctttacccg atgttaggaa taatttctat
     5581 cactacaatc aatcaaacga ccccaccatc aaattgatag caatgttgta cacaccactt
     5641 agggctaata atgctgggga cgatgtcttc acagtttctt gtcgggttct cacgagacca
     5701 tcccccgatt ttgatttcat atttttagtg ccacccacag ttgagtcaag aactaaacca
     5761 ttctctgtcc caattttaac tgttgaggag atgaccaatt caagattccc cattcctttg
     5821 gaaaagttgt tcacgggtcc cagcagtgcc tttgttgttc aaccacaaaa tggcaggtgc
     5881 acgactgatg gcgtgctctt aggtactacc caactgtctc ctgtcaacat ctgcaccttc
     5941 agaggggatg tcacccacat tgctggtact caagaataca caatgaatct ggcctcccaa
     6001 aactggaaca attatgaccc aacagaagaa atcccagccc ctctgggaac tccagatttc
     6061 gtgggtaaga tccaaggcgt gctcacccaa accacaagga gggatggctc gacccgcggt
     6121 cacaaagcca cagtgagcac tggaagtgtc cacttcaccc caaagctggg cagaattcaa
     6181 ttctccactg atacaagcaa tgattttgaa actggccaaa acacgagatt caccccagtc
     6241 ggtgttgtcc aggatggtag taccacccac caaaatgaac cccaacaatg ggtactccca
     6301 aattattcag gtagagatag tcacaatgtg cacctagccc ctgccgtggc cccctctttt
     6361 ccgggtgagc aacttctttt cttcaggtcc actatgcccg gatgcagcgg gtatcccaac
     6421 atgaatttgg attgtctact cccccaggag tgggtgcagc acttctacca agaggcagcc
     6481 ccagcacaat ctgatgtggc tctgctaaga tttgtgaatc cagacacagg tagggttttg
     6541 tttgagtgta agcttcataa atcaggctat gtcacagtgg ctcacactgg ccaacatgat
     6601 ttagttatcc cccccaatgg ctattttaga tttgattcct gggtcaacca gttctacaca
     6661 cttgccccca tgggaaatgg gacggggcgt agacgtgcat tataatggct ggagctttct
     6721 ttgctggatt ggcatctgat gtccttggct ctggacttgg ttccctaatc aatgctgggg
     6781 ctggggccat caaccaaaaa gttgaatttg aaaataacag aaagttgcaa caagcttcct
     6841 tccaatttag cagcaaccta caacaggctt cctttcaaca tgataaagag atgctccaag
     6901 cacaaattga ggccaccaaa aagttgcaac aggaaatgat gaaagttaaa caggcaatgc
     6961 tcctagaggg tgggttctct gagacagatg cagcccgtgg ggcaatcaac gcccccatga
     7021 caaaggcttt ggactggagc gggacaaggt actgggctcc cgatgctagg actacaacat
     7081 acaatgcagg ccgcttttcc acccctcaac cctcgggggc actgccagga agaactaatc
     7141 ttggggctgc tgtccccgcc cggggctcct ctagtacgcc ttctaactct tcttctgtgt
     7201 actcaaatca aactgcttca acgagacttg gttctacagc tggttctggt accagtgtct
     7261 cgagcctccc gtcaactgca aggactagga gctgggttga ggatcaaaat aggaatttgt
     7321 cacctttcat gaggggggcc tacaacatat cgtttgtcac cccaccatct agcagatcct
     7381 ctagccaagg cacagtctca accgtgccta aagaagtttt ggactcctgg actggcgctt
     7441 tcaacacgcg caggcagcct ctcttcgctc acattcgtaa gcgaggggag tcacgggtgt
     7501 aa
//