Typing tool

Norovirus genogroup II polymerase (RdRp)   GenBank
1 GII.P1 Hawaii_U07611
2 GII.P2
 (2)
Melksham_X81879
3 MK04_DQ456824  
4 GII.P3
 (3)
Toronto_U02030
5 Amsterdam1_KJ194500  
6 MX_U22498  
7 GII.P4 Den Haag
 (2)
DenHaag_EF126965  
8 Shimane2_AB541348  
9 GII.P4 Farmington Hills
 (2)
FarmingtonHills_AY502023  
10 Langen1061_AY485642  
11 GII.P4 Hunter
 (2)
Chiba04-1008_AB220926  
12 Hunter504D04O_DQ078814  
13 GII.P4
New Orleans
 (4)
Hokkaido3_AB933767  
14 NSW001P_GQ845367  
15 NewOrleans_GU445325  
16 WI-467121_KX354134  
17 GII.P4 US95-96
 (2)
Saitama_AB112306  
18 US95-96_AF414424  
19 GII.P4 Yerseke
 (2)
Isumi060936_AB294790  
20 Yerseke_EF126963  
21 GII.P5 SaitamaT52_KJ196288  
22 GII.P6
 (2)
SaitamaU16_AB039778
23 GZ2010-L96Guangzhou_JX989075  
24 GII.P7
 (18)
14-55_KX158281  
25 236_MH218692  
26 30443_KM198534  
27 Beijing55028_GQ856465  
28 Belgium-4_MN248516  
29 GoulburnValleyG5175C_DQ379715  
30 Gwynedd273_AF414409  
31 Maizuru8533_GU017903  
32 Miami292_AF414410  
33 OC071182007_AB542917  
34 PV-Voelk0017_KM289171  
35 S9c_KC576910  
36 Saga8610_GU594162  
37 SaitamaU4_AB039777  
38 SendaiYG99_KJ196278  
39 TAKAsanKimchi_KJ196295  
40 TCHE99-13646_GU930737  
41 VA97207_AY038599  
42 GII.P8
 (2)
SaitamaU25_AB039780
43 CHDC3936_JX846926  
44 GII.P11
 (2)
Sw43_AB126320
45 OH-QW170_AY823306  
46 GII.P12
 (5)
Sakai04179_AB220922
47 Asia_AB220921  
48 Mc37_AY237415  
49 SaitamaT80_KJ196276  
50 SaitamaU1_AB039775  
51 GII.P13
 (2)
Briancon870_EF529741
52 PunePC25_EU921354  
53 GII.P15
 (2)
SapporoHK299_KJ196290
54 Beijing55161_GQ856474  
55 GII.P16
 (6)
Neustrelitz260_AY772730
56 CS-E1_AY502009  
57 OH16002_LC153121  
58 SaitamaT87_KJ196286  
59 SantaRosa1764_KY865306  
60 Tiffin_AY502010  
61 GII.P17
 (2)
Kawasaki323_AB983218
62 Kawasaki308_LC037415  
63 GII.P18
 (2)
OH-QW101_AY823304
64 OH-QW125_AY823305  
65 GII.P20 Leverkusen267_EU424333
66 GII.P21
 (7)
PontdeRoide673_AY682549
67 109_MH218579  
68 Herzberg385_AF539439  
69 KawasakiYO284_KJ196284  
70 NSW730O_KT239614  
71 Picton_AY919139  
72 RotterdamE1300327_MF140689  
73 GII.P22 Yuri_AB083780
74 GII.P23
 (2)
Loreto1847_KT290889
75 Loreto6422_MG495080  
76 GII.P24
 (2)
Loreto1972_KY225989
77 EdenPrairie5457_MG495084  
78 GII.P25 Dhaka1928_MG495083
79 GII.P26
 (2)
Leon4509_KU306738
80 Leipzig07788a_MF352142  
81 GII.P27 Loreto0959_MG495077
82 GII.P28 Yuzawa-Gira2HS_KJ196291
83 GII.P29
 (2)
SN2000JA_AB190457
84 Arg320_AF190817  
85 GII.P30
 (2)
SnowMountain_AY134748
86 KL109_JX846925  
87 GII.P31
 (7)
Osaka_AB434770
88 CUHK-NS-2200_MN400355  
89 CUHK-NS-682_KT589391  
90 IPH2172-09VG4_JF697282  
91 PunePC51_EU921388  
92 Sydney_JX459908  
93 WoononaNSW3309_JX459907  
94 GII.P32
 (2)
S63_AY682550
95 HenrytonSP17_MF405169  
96 GII.P33
 (2)
StGeorge_GQ845370
97 Ascension208_JN797508  
98 GII.P34
 (2)
OC97007_AB089882
99 SaitamaE24_KF730316  
100 GII.P35
 (2)
E3_AY682552
101 B17_KC576911  
102 GII.P36
 (2)
OC96065_AF315813
103 Tokyo_AB684664  
104 GII.P37
 (2)
PunePC24_EU921353
105 Amsterdam3_KJ194507  
106 GII.P38 Beijing53931_GQ856469
107 GII.P39 CHDC5191_FJ537134
108 GII.P40
 (2)
OsakaNI_DQ366347
109 SaitamaT49_KJ196277  
110 GII.P41
 (2)
GoulburnValleyG5175B_DQ379714
111 HK71_JX846924  
112 GII.PNA1 Loreto1257_MG495079
113 GII.PNA2 PNV06929_MG706448
114 GII.PNA3 CHDC2094_FJ537135
115 GII.PNA4 Sw918_AB074893
116 GII.PNA5 Dhaka1940_MG495082
117 GII.PNA6 Arg13099_KX061540
118 GII.PNA7 No35-Saitama-99-1_LC342059
119 GII.PNA8 Empangeni10403_KR904229
120 GII.PNA9 Arg15813_MK733205
Norovirus genogroup II polymerase phylogenetic tree

 
The tree was computed from nucleotide sequence alignment using maximum likelihood (ML) method with PhyML software and was plotted and edited in FigTree graphical viewer.

Page last reviewed: September 21, 2019