Typing tool

Norovirus genogroup II capsid (VP1)   GenBank
1 GII.1
 (5)
Hawaii_U07611
2 Amsterdam3_KJ194507  
3 Ascension208_JN797508  
4 Dillingen391_AF425767  
5 Picton_AY919139  
6 GII.2
 (12)
Melksham_X81879
7 E3_AY682552  
8 HenrytonSP17_MF405169  
9 KL109_JX846925  
10 MK04_DQ456824  
11 OC97007_AB089882  
12 OsakaNI_DQ366347  
13 PontdeRoide673_AY682549  
14 SaitamaE24_KF730316  
15 SantaRosa1764_KY865306  
16 SnowMountain_AY134748  
17 Vaals_AB281090  
18 GII.3
 (13)
Toronto_U02030
19 109_MH218579  
20 Amsterdam1_KJ194500  
21 Arg320_AF190817  
22 HK71_JX846924  
23 Herzberg385_AF539439  
24 IPH2172-09VG4_JF697282  
25 MX_U22498  
26 Milwaukee009_JN565063  
27 NSW730O_KT239614  
28 RotterdamE1300327_MF140689  
29 RotterdamP1D0_AB385626  
30 SN2000JA_AB190457  
31 GII.4
 (2)
CHDC2094_FJ537135  
32 CHDC5191_FJ537134  
33 GII.4 Asia
 (2)
Asia_AB220921  
34 Sakai04179_AB220922  
35 GII.4
Den Haag
 (3)
DenHaag_EF126965  
36 Minerva_EU078417  
37 Shimane2_AB541348  
38 GII.4 Farmington Hills
 (2)
FarmingtonHills_AY502023  
39 Langen1061_AY485642  
40 GII.4 Hong Kong CUHK-NS-2200_MN400355  
41 GII.4
Hunter
 (3)
Chiba04-1008_AB220926  
42 Hunter504D04O_DQ078814  
43 Hunter_AY883096  
44 GII.4
New Orleans
 (4)
Hokkaido3_AB933767  
45 NSW001P_GQ845367  
46 NewOrleans_2010-SP-0870_KX353972  
47 NewOrleans_GU445325  
48 GII.4 Osaka
 (2)
Osaka_AB434770  
49 PunePC51_EU921388  
50 GII.4
Sydney
 (4)
OH16002_LC153121  
51 Sydney_JX459908  
52 WI-467121_KX354134  
53 WoononaNSW3309_JX459907  
54 GII.4
US95-96
 (3)
Saitama_AB112306  
55 US95-96_AF414424  
56 US95-96_AJ004864  
57 GII.4 Yerseke
 (2)
Isumi060936_AB294790  
58 Yerseke_EF126963  
59 GII.5
 (4)
Hillingdon_AJ277607
60 S63_AY682550  
61 SaitamaT49_KJ196277  
62 SaitamaT52_KJ196288  
63 GII.6
 (12)
Seacroft_AJ277620
64 14-55_KX158281  
65 30443_KM198534  
66 Belgium-4_MN248516  
67 GZ2010-L96Guangzhou_JX989075  
68 Miami292_AF414410  
69 S9c_KC576910  
70 SaitamaU16_AB039778  
71 SaitamaU4_AB039777  
72 Shizuoka8913_HM633213  
73 TCHE99-13646_GU930737  
74 Tokyo_AB684664  
75 GII.7
 (5)
Leeds_AJ277608
76 236_MH218692  
77 CHDC3936_JX846926  
78 Gwynedd273_AF414409  
79 TAKAsanKimchi_KJ196295  
80 GII.8
 (2)
Amsterdam9818_AF195848
81 SaitamaU25_AB039780  
82 GII.9
 (2)
VA97207_AY038599
83 GoulburnValleyG5175C_DQ379715  
84 GII.10
 (2)
Erfurt546_AF427118
85 Mc37_AY237415  
86 GII.11
 (2)
Sw918_AB074893
87 Sw43_AB126320  
88 GII.12
 (5)
Wortley_AJ277618
89 No35-Saitama-99-1_LC342059  
90 PunePC24_EU921353  
91 SaitamaU1_AB039775  
92 StGeorge_GQ845370  
93 GII.13
 (5)
Fayetteville_AY113106
94 Empangeni10403_KR904229  
95 GoulburnValleyG5175B_DQ379714  
96 PunePC25_EU921354  
97 SaitamaT80_KJ196276  
98 GII.14
 (6)
M7_AY130761
99 Beijing55028_GQ856465  
100 Maizuru8533_GU017903  
101 PV-Voelk0017_KM289171  
102 Saga8610_GU594162  
103 SendaiYG99_KJ196278  
104 GII.16
 (3)
Tiffin_AY502010
105 Hiram_AY502006  
106 Neustrelitz260_AY772730  
107 GII.17
 (8)
CS-E1_AY502009
108 Arg13099_KX061540  
109 Briancon870_EF529741  
110 CUHK-NS-682_KT589391  
111 Katrina-17_DQ438972  
112 Kawasaki308_LC037415  
113 Kawasaki323_AB983218  
114 SaitamaT87_KJ196286  
115 GII.18
 (2)
OH-QW101_AY823304
116 OH-QW125_AY823305  
117 GII.19 OH-QW170_AY823306
118 GII.20
 (3)
Luckewalde591_EU373815
119 Leverkusen267_EU424333  
120 OC071182007_AB542917  
121 GII.21
 (2)
IF1998_AY675554
122 KawasakiYO284_KJ196284  
123 GII.22
 (2)
Yuri_AB083780
124 Dhaka1940_MG495082  
125 GII.23
 (2)
Loreto1847_KT290889
126 Loreto6422_MG495080  
127 GII.24
 (2)
Loreto1972_KY225989
128 EdenPrairie5457_MG495084  
129 GII.25
 (2)
Beijing53931_GQ856469
130 Dhaka1928_MG495083  
131 GII.26
 (2)
Leon4509_KU306738
132 Leipzig07788a_MF352142  
133 GII.27
 (2)
Loreto0959_MG495077
134 Arg15813_MK733205  
135 GII.NA1 Loreto1257_MG495079
136 GII.NA2 PNV06929_MG706448
Norovirus genogroup II capsid phylogenetic tree

 
The tree was computed from amino acid sequence alignment using maximum likelihood (ML) method with PhyML software and was plotted and edited in FigTree graphical viewer.

Page last reviewed: March 1, 2021