Typing tool

Reference sequences

Norovirus (213) Sapovirus (128)
polymerase (RdRp) - 167 capsid (VP1) - 210 capsid (VP1)
1 GI.P1
 (4)
Norwalk_M87661 1 GI.1
 (4)
Norwalk_M87661 1 GI.1
 (19)
Chanthaburi74_AY646854
2 Gothenburg_EU085529   2 Gothenburg_EU085529   2 Dresden_AY694184
3 SRSV-KY-8989J_L23828   3 SRSV-KY-8989J_L23828   3 Hunan_KX980412
4 V1622-06_AB447406   4 V1622-06_AB447406   4 Manchester_X86560
5 GI.P2
 (2)
Southampton_L07418 5 GI.2
 (3)
Southampton_L07418 5 Mc114_AY237422
6 Leuven_FJ515294   6 Constellation59_AF435807   6 N21_AY237423
7 GI.P3
 (3)
VA98115_AY038598 7 Leuven_FJ515294   7 Nashville9427_MG012397
8 CHDC116_JX846929   8 GI.3
 (15)
DesertShield395_U04469 8 Nashville9432_MG012437
9 ShimizuKK2866_KJ196292   9 Akabane991130_EF547396   9 Nashville9478_MG012438
10 GI.P4
 (4)
Chiba407_AB042808 10 Beijing54108_GQ856470   10 Nashville9491_MG012400
11 Beijing55169_GQ856475   11 Beijing54114_GQ856471   11 Nashville9691-1_MG012435
12 Groningen_LN854563   12 Beijing54660_GQ856472   12 NongKhai50_AY646853
13 Queensarmsleeds92_AJ313030   13 Beijing55042_GQ856473   13 Pampas1845_MG012398
14 GI.P5
 (2)
Siklos-HUN5407_KJ402295 14 CHDC116_JX846929   14 Pampas1863_MG012439
15 AppalachicolaBay318_AF414406   15 Muenster702_KM289169   15 Pampas1870_MG012436
16 GI.P6
 (2)
BS5(Hesse)_AF093797 16 Otofuke_AB187514   16 Portland3639_MG012399
17 14-BC-1_KP027330   17 Potsdam196_AF439267   17 SapporoMT-2010_HM002617
18 GI.P7
 (3)
AlbertaEI404_KU311161   18 ShimizuKK2866_KJ196292   18 SeoulROK62_KP298674
19 LillaEdetS5b_JN603251   19 Stavanger_AF145709   19 Zhejiang1_KT327081
20 Providence_JN899243   20 V170707_AB447414   20 GI.2
 (7)
BE-HPI01_JX993277
21 GI.P8
 (2)
NagoyaKY531_KJ196298 21 VA98115_AY038598   21 BR-DF01_AB614356
22 KolkataL8775_AB290150   22 Vesoul576_EF529738   22 Nashville9411_MG012440
23 GI.P9
 (3)
CAIQ12110628_KF586507 23 GI.4
 (5)
Chiba407_AB042808 23 Oakland3023_MG012442
24 LillaEdetS48_JN183159   24 Beijing55169_GQ856475   24 Oakland6371_MG012441
25 Vancouver730_HQ637267   25 Groningen_LN854563   25 Parkville_U73124
26 GI.P10
 (2)
DesertShield395_U04469 26 Koblenz433_AF394960   26 Potsdam_AF294739
27 Beijing55042_GQ856473   27 Queensarmsleeds92_AJ313030   27 GI.3
 (3)
Chiba010658_AJ606696
28 GI.P11
 (3)
Beijing53997_GQ856463 28 GI.5
 (6)
Musgrove_AJ277614 28 OB20151927_MG012401
29 Beijing55063_GQ856464   29 AppalachicolaBay318_AF414406   29 Stockholm318_AF194182
30 Hiroshima48-938_AB354289   30 OC020180_LC101825   30 GI.4 Chiba000496_AJ606693
31 GI.P12
 (2)
SzUG1_AB039774 31 Siklos-HUN5407_KJ402295   31 GI.5
 (3)
Ehime2K-814_AJ606698
32 Yiwu-CB1_MH443711   32 SzUG1_AB039774   32 Ehime643_DQ366345
33 GI.P13
 (4)
Vesoul576_EF529738 33 Yiwu-CB1_MH443711   33 Yokote1_AB253740
34 Beijing54108_GQ856470   34 GI.6
 (9)
BS5(Hesse)_AF093797 34 GI.6
 (4)
Chiba000764_AJ606694
35 Beijing54114_GQ856471   35 14-BC-1_KP027330   35 Nashville9367_MG012443
36 Beijing54660_GQ856472   36 Beijing53997_GQ856463   36 Nichinan_AB455803
37 GI.P14
 (2)
Otofuke_AB187514 37 Beijing55063_GQ856464   37 Tokyo08-2439_AB622435
38 Muenster702_KM289169   38 Hiroshima48-938_AB354289   38 GI.7
 (2)
D1714_AB522390
39 GI.PNA1 WUG1_AB081723 39 No20-Saitama-98-17_LC342057   39 Ehime041680_AB258418
40 GI.PNA2
 (2)
Dhaka1882_MH130046 40 Sindlesham_AJ277615   40 GII.1
 (16)
Bristol_AJ249939
41 NizhnyNovgorod_FJ383816   41 VA497_AF538678   41 Chiba020003_AJ606692
42 GI.PNA3 V170707_AB447414 42 WUG1_AB081723   42 Ehime2K-1948_AJ786351
43 GI.PNA4 No20-Saitama-98-17_LC342057 43 GI.7
 (8)
Winchester_AJ277609 43 London29845_U95645
44 GII.P1 Hawaii_U07611 44 AlbertaEI404_KU311161   44 Lyon598_AJ271056
45 GII.P2
 (2)
Melksham_X81879 45 Chiba030100_AJ844469   45 Mc2_AY237419
46 MK04_DQ456824   46 Dhaka1882_MH130046   46 Nashville9343_MG012444
47 GII.P3
 (3)
Toronto_U02030 47 IF2036_AY675555   47 Nashville9346_MG012445
48 Amsterdam1_KJ194500   48 LillaEdetS5b_JN603251   48 Nashville9353_MG012404
49 MX_U22498   49 NizhnyNovgorod_FJ383816   49 Nashville9360_MG012402
50 GII.P4 Den Haag
 (2)
DenHaag_EF126965   50 Providence_JN899243   50 Nashville9385_MG012409
51 Shimane2_AB541348   51 GI.8
 (2)
Boxer_AF538679 51 Nashville9422_MG012403
52 GII.P4 Farmington Hills
 (2)
FarmingtonHills_AY502023   52 NagoyaKY531_KJ196298   52 Nashville9510_MG012406
53 Langen1061_AY485642   53 GI.9
 (3)
Vancouver730_HQ637267 53 Nashville9511_MG012405
54 GII.P4 Hunter
 (2)
Chiba04-1008_AB220926   54 CAIQ12110628_KF586507   54 Nashville9525_MG012407
55 Hunter504D04O_DQ078814   55 LillaEdetS48_JN183159   55 Nashville9691-2_MG012408
56 GII.P4
New Orleans
 (4)
Hokkaido3_AB933767   56 GII.1
 (5)
Hawaii_U07611 56 GII.2
 (8)
Chiba990727_AJ606689
57 NSW001P_GQ845367   57 Amsterdam3_KJ194507   57 Mc10_AY237420
58 NewOrleans_GU445325   58 Ascension208_JN797508   58 Mex340_AF435812
59 WI-467121_KX354134   59 Dillingen391_AF425767   59 Nashville9331_MG012411
60 GII.P4 US95-96
 (2)
Saitama_AB112306   60 Picton_AY919139   60 Nashville9393_MG012412
61 US95-96_AF414424   61 GII.2
 (12)
Melksham_X81879 61 Nashville9521_MG012410
62 GII.P4 Yerseke
 (2)
Isumi060936_AB294790   62 E3_AY682552   62 Nashville9795_MG012413
63 Yerseke_EF126963   63 HenrytonSP17_MF405169   63 OB2015_2158
64 GII.P5 SaitamaT52_KJ196288   64 KL109_JX846925   64 GII.3
 (13)
13-3-2_KM092509
65 GII.P6
 (2)
SaitamaU16_AB039778 65 MK04_DQ456824   65 20082029_AB630068
66 GZ2010-L96Guangzhou_JX989075   66 OC97007_AB089882   66 C12_AY603425
67 GII.P7
 (18)
14-55_KX158281   67 OsakaNI_DQ366347   67 Chiba040507_AJ786350
68 236_MH218692   68 PontdeRoide673_AY682549   68 Kushiro5_AB455793
69 30443_KM198534   69 SaitamaE24_KF730316   69 Leon6701_MG012414
70 Beijing55028_GQ856465   70 SantaRosa1764_KY865306   70 Leon6708_MG012416
71 Belgium-4_MN248516   71 SnowMountain_AY134748   71 Nashville9354_MG012419
72 GoulburnValleyG5175C_DQ379715   72 Vaals_AB281090   72 Nashville9513_MG012418
73 Gwynedd273_AF414409   73 GII.3
 (13)
Toronto_U02030 73 Nashville9517_MG012415
74 Maizuru8533_GU017903   74 109_MH218579   74 Nayoro4_AB455794
75 Miami292_AF414410   75 Amsterdam1_KJ194500   75 Pampas1856_MG012417
76 OC071182007_AB542917   76 Arg320_AF190817   76 Sydney53_DQ104360
77 PV-Voelk0017_KM289171   77 HK71_JX846924   77 GII.4
 (3)
Kumamoto6_AB429084
78 S9c_KC576910   78 Herzberg385_AF539439   78 PHL-TGO12-028_KP067444
79 Saga8610_GU594162   79 IPH2172-09VG4_JF697282   79 Pampas1873_MG012446
80 SaitamaU4_AB039777   80 MX_U22498   80 GII.5
 (6)
Cruiseship_AY289804
81 SendaiYG99_KJ196278   81 Milwaukee009_JN565063   81 Nashville9349_MG012447
82 TAKAsanKimchi_KJ196295   82 NSW730O_KT239614   82 Nashville9387_MG012449
83 TCHE99-13646_GU930737   83 RotterdamE1300327_MF140689   83 Pampas1868_MG012451
84 VA97207_AY038599   84 RotterdamP1D0_AB385626   84 SantaRosa3693_MG012450
85 GII.P8
 (2)
SaitamaU25_AB039780 85 SN2000JA_AB190457   85 SantaRosa3812_MG012448
86 CHDC3936_JX846926   86 GII.4
 (2)
CHDC2094_FJ537135   86 GII.6 Sakaeo15_AY646855
87 GII.P11
 (2)
Sw43_AB126320 87 CHDC5191_FJ537134   87 GII.7 20072248_AB630067
88 OH-QW170_AY823306   88 GII.4 Asia
 (2)
Asia_AB220921   88 GII.8
 (2)
Monterey6283_MG012453
89 GII.P12
 (5)
Sakai04179_AB220922 89 Sakai04179_AB220922   89 Monterey6284_MG012452
90 Asia_AB220921   90 GII.4
Den Haag
 (3)
DenHaag_EF126965   90 GIV.1
 (30)
Angelholm-SW278_DQ125333
91 Mc37_AY237415   91 Minerva_EU078417   91 Angelholm-SW314_DQ125334
92 SaitamaT80_KJ196276   92 Shimane2_AB541348   92 Ehime1107_DQ058829
93 SaitamaU1_AB039775   93 GII.4 Farmington Hills
 (2)
FarmingtonHills_AY502023   93 Ehime1596_DQ366346
94 GII.P13
 (2)
Briancon870_EF529741 94 Langen1061_AY485642   94 Leon1751_MG012454
95 PunePC25_EU921354   95 GII.4 Hong Kong CUHK-NS-2200_MN400355   95 Nashville9327_MG012430
96 GII.P15
 (2)
SapporoHK299_KJ196290 96 GII.4
Hunter
 (3)
Chiba04-1008_AB220926   96 Nashville9489_MG012421
97 Beijing55161_GQ856474   97 Hunter504D04O_DQ078814   97 Pampas1858_MG012420
98 GII.P16
 (6)
Neustrelitz260_AY772730 98 Hunter_AY883096   98 Pampas1861_MG012429
99 CS-E1_AY502009   99 GII.4
New Orleans
 (4)
Hokkaido3_AB933767   99 Pampas1862_MG012461
100 OH16002_LC153121   100 NSW001P_GQ845367   100 Pampas1864_MG012462
101 SaitamaT87_KJ196286   101 NewOrleans_2010-SP-0870_KX353972   101 Pampas1865_MG012463
102 SantaRosa1764_KY865306   102 NewOrleans_GU445325   102 Pampas1869_MG012431
103 Tiffin_AY502010   103 GII.4 Osaka
 (2)
Osaka_AB434770   103 Pampas1871_MG012432
104 GII.P17
 (2)
Kawasaki323_AB983218 104 PunePC51_EU921388   104 Portland3587_MG012425
105 Kawasaki308_LC037415   105 GII.4
Sydney
 (4)
OH16002_LC153121   105 Portland3602_MG012428
106 GII.P18
 (2)
OH-QW101_AY823304 106 Sydney_JX459908   106 Portland3629_MG012424
107 OH-QW125_AY823305   107 WI-467121_KX354134   107 Portland3631_MG012459
108 GII.P20 Leverkusen267_EU424333 108 WoononaNSW3309_JX459907   108 Portland3632_MG012423
109 GII.P21
 (7)
PontdeRoide673_AY682549 109 GII.4
US95-96
 (3)
Saitama_AB112306   109 Portland3633_MG012427
110 109_MH218579   110 US95-96_AF414424   110 Portland3636_MG012426
111 Herzberg385_AF539439   111 US95-96_AJ004864   111 Portland3641_MG012457
112 KawasakiYO284_KJ196284   112 GII.4 Yerseke
 (2)
Isumi060936_AB294790   112 Portland3643_MG012458
113 NSW730O_KT239614   113 Yerseke_EF126963   113 Portland3644_MG012422
114 Picton_AY919139   114 GII.5
 (4)
Hillingdon_AJ277607 114 Portland3649_MG012456
115 RotterdamE1300327_MF140689   115 S63_AY682550   115 Portland3651_MG012455
116 GII.P22 Yuri_AB083780 116 SaitamaT49_KJ196277   116 Quetzaltenago3711_MG012460
117 GII.P23
 (2)
Loreto1847_KT290889 117 SaitamaT52_KJ196288   117 Sydney3_DQ104357
118 Loreto6422_MG495080   118 GII.6
 (12)
Seacroft_AJ277620 118 Yakumo8_AB455795
119 GII.P24
 (2)
Loreto1972_KY225989 119 14-55_KX158281   119 Hou7-1181_AF435814
120 EdenPrairie5457_MG495084   120 30443_KM198534   120 GV.1
 (7)
Arg39_AY289803
121 GII.P25 Dhaka1928_MG495083 121 Belgium-4_MN248516   121 Ehime01-1669_AJ606699
122 GII.P26
 (2)
Leon4509_KU306738 122 GZ2010-L96Guangzhou_JX989075   122 Ehime475_DQ366344
123 Leipzig07788a_MF352142   123 Miami292_AF414410   123 Ishikawa03-158_AJ786352
124 GII.P27 Loreto0959_MG495077 124 S9c_KC576910   124 Nashville9424_MG012433
125 GII.P28 Yuzawa-Gira2HS_KJ196291 125 SaitamaU16_AB039778   125 Nashville9492_MG012434
126 GII.P29
 (2)
SN2000JA_AB190457 126 SaitamaU4_AB039777   126 NongKhai24_AY646856
127 Arg320_AF190817   127 Shizuoka8913_HM633213   127 GV.2
 (2)
NagoyaNGY1_AB775659
128 GII.P30
 (2)
SnowMountain_AY134748 128 TCHE99-13646_GU930737   128 Sollentuna_KY040366
129 KL109_JX846925   129 Tokyo_AB684664  
130 GII.P31
 (7)
Osaka_AB434770 130 GII.7
 (5)
Leeds_AJ277608
131 CUHK-NS-2200_MN400355   131 236_MH218692  
132 CUHK-NS-682_KT589391   132 CHDC3936_JX846926  
133 IPH2172-09VG4_JF697282   133 Gwynedd273_AF414409  
134 PunePC51_EU921388   134 TAKAsanKimchi_KJ196295  
135 Sydney_JX459908   135 GII.8
 (2)
Amsterdam9818_AF195848
136 WoononaNSW3309_JX459907   136 SaitamaU25_AB039780  
137 GII.P32
 (2)
S63_AY682550 137 GII.9
 (2)
VA97207_AY038599
138 HenrytonSP17_MF405169   138 GoulburnValleyG5175C_DQ379715  
139 GII.P33
 (2)
StGeorge_GQ845370 139 GII.10
 (2)
Erfurt546_AF427118
140 Ascension208_JN797508   140 Mc37_AY237415  
141 GII.P34
 (2)
OC97007_AB089882 141 GII.11
 (2)
Sw918_AB074893
142 SaitamaE24_KF730316   142 Sw43_AB126320  
143 GII.P35
 (2)
E3_AY682552 143 GII.12
 (5)
Wortley_AJ277618
144 B17_KC576911   144 No35-Saitama-99-1_LC342059  
145 GII.P36
 (2)
OC96065_AF315813 145 PunePC24_EU921353  
146 Tokyo_AB684664   146 SaitamaU1_AB039775  
147 GII.P37
 (2)
PunePC24_EU921353 147 StGeorge_GQ845370  
148 Amsterdam3_KJ194507   148 GII.13
 (5)
Fayetteville_AY113106
149 GII.P38 Beijing53931_GQ856469 149 Empangeni10403_KR904229  
150 GII.P39 CHDC5191_FJ537134 150 GoulburnValleyG5175B_DQ379714  
151 GII.P40
 (2)
OsakaNI_DQ366347 151 PunePC25_EU921354  
152 SaitamaT49_KJ196277   152 SaitamaT80_KJ196276  
153 GII.P41
 (2)
GoulburnValleyG5175B_DQ379714 153 GII.14
 (6)
M7_AY130761
154 HK71_JX846924   154 Beijing55028_GQ856465  
155 GII.PNA1 Loreto1257_MG495079 155 Maizuru8533_GU017903  
156 GII.PNA2 PNV06929_MG706448 156 PV-Voelk0017_KM289171  
157 GII.PNA3 CHDC2094_FJ537135 157 Saga8610_GU594162  
158 GII.PNA4 Sw918_AB074893 158 SendaiYG99_KJ196278  
159 GII.PNA5 Dhaka1940_MG495082 159 GII.16
 (3)
Tiffin_AY502010
160 GII.PNA6 Arg13099_KX061540 160 Hiram_AY502006  
161 GII.PNA7 No35-Saitama-99-1_LC342059 161 Neustrelitz260_AY772730  
162 GII.PNA8 Empangeni10403_KR904229 162 GII.17
 (8)
CS-E1_AY502009
163 GII.PNA9 Arg15813_MK733205 163 Arg13099_KX061540  
164 GIV.P1
 (3)
FortLauderdale_AF414426 164 Briancon870_EF529741  
165 LakeMacquarie_JQ613567   165 CUHK-NS-682_KT589391  
166 SaintCloud_AF414427   166 Katrina-17_DQ438972  
167 GIV.PNA1 WI7002_KX907728 167 Kawasaki308_LC037415  
168 Kawasaki323_AB983218  
169 SaitamaT87_KJ196286  
170 GII.18
 (2)
OH-QW101_AY823304
171 OH-QW125_AY823305  
172 GII.19 OH-QW170_AY823306
173 GII.20
 (3)
Luckewalde591_EU373815
174 Leverkusen267_EU424333  
175 OC071182007_AB542917  
176 GII.21
 (2)
IF1998_AY675554
177 KawasakiYO284_KJ196284  
178 GII.22
 (2)
Yuri_AB083780
179 Dhaka1940_MG495082  
180 GII.23
 (2)
Loreto1847_KT290889
181 Loreto6422_MG495080  
182 GII.24
 (2)
Loreto1972_KY225989
183 EdenPrairie5457_MG495084  
184 GII.25
 (2)
Beijing53931_GQ856469
185 Dhaka1928_MG495083  
186 GII.26
 (2)
Leon4509_KU306738
187 Leipzig07788a_MF352142  
188 GII.27
 (2)
Loreto0959_MG495077
189 Arg15813_MK733205  
190 GII.NA1 Loreto1257_MG495079
191 GII.NA2 PNV06929_MG706448
192 GIV.1
 (10)
Alphatron_AF195847
193 Ahrenshoop246_JQ970479  
194 Alph23_DQ093067  
195 CCDCGR1113-59_KC894731  
196 Canet-en-Roussillon_KT030674  
197 FortLauderdale_AF414426  
198 Italy980_FM865412  
199 LakeMacquarie_JQ613567  
200 OC01017023_LC101824  
201 SaintCloud_AF414427  
202 GIV.2
 (2)
lion387_EF450827
203 CU081210E_JF781268  
204 GIV.NA1 WI7002_KX907728
205 GVIII.1
 (2)
Chiba-040502_AJ844470
206 Yuzawa-Gira2HS_KJ196291  
207 GIX.1
 (4)
J23_AY130762
208 Beijing55161_GQ856474  
209 Mex7076_AF542090  
210 SapporoHK299_KJ196290  

Page last reviewed: September 21, 2019